F256972

General Info

Members Datasets Scaffolds Average Seq Length
170 102 170 334

Family's Representative Sequence

Representative Sequence 3300026118|Ga0207675_100185267|Ga0207675_1001852673
Length 352
Sequence MQGIGDVKQGKGFIVIDFTNMNSDQQKNIFVTGASGLVGSHLVRALLQQQKKVKALYRNNIPTFDGAENVQWIKGNILDIISVEEAMRNVQQVYHCAAMVSFNPKERKEMNKTNIEGTANVVNECLNAGVEKLLHVSSVSALGRIRQNEIISEKMKWTPETSNSEYGKTKYLAEMEVWRGVGEGLNAVIVNPTIILGAADWNNSSTAIFKNVYKEFPWYTDGTTGFVDVEDLVKAMTMLMESNISKERFILSGANTTYHELFDLIAKAFAKKPPHKKVTPFIAAVVWRLEKIKAALTGKNPLVTKETARTAQAKVQFDNTKLLKYLPAFSYSPLEKSVERICNEFKKIYNLA

Samples

Sample ID Description Type Environment
1 2818991444 Filimonas endophytica 3197 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
84 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
85 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
86 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
91 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
92 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
93 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
94 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
95 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
96 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
97 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
98 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
99 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.41
Metatranscriptomes 0
Isolates 0.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.76
Nodule 0
Rhizoplane 1.76
Rhizosphere 92.35
Stem 0
Stem Tuber 0
Unclassified 4.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10001429 3300003320 Bacteria 14331
2 rootH2_10208208 3300003320 Bacteria 5364
3 rootL2_10106635 3300003322 Bacteria 2338
4 rootH1_10040787 3300003323 Bacteria 3854
5 rootH1_10076471 3300003316 Bacteria 7886
6 rootH1_10076471 3300003323 Bacteria 4360
7 JGI25160J50197_1001021 3300003354 Bacteria 14503
8 Ga0070658_10016202 3300005327 Bacteria 5963
9 Ga0070658_10101295 3300005327 Bacteria 2381
10 Ga0070658_10197373 3300005327 Bacteria 1697
11 Ga0070670_100120380 3300005331 Bacteria 2264
12 Ga0070666_10277700 3300005335 Bacteria 1190
13 Ga0070680_100047835 3300005336 Bacteria 3484
14 Ga0070682_100000019 3300005337 Bacteria 220844
15 Ga0070682_100002989 3300005337 Bacteria 9381
16 Ga0068868_100009998 3300005338 Bacteria 6856
17 Ga0070660_100001701 3300005339 Bacteria 15090
18 Ga0070660_100035682 3300005339 Bacteria 3764
19 Ga0070661_100103458 3300005344 Bacteria 2121
20 Ga0070675_100125979 3300005354 Bacteria 2179
21 Ga0070673_100012602 3300005364 Bacteria 5810
22 Ga0070659_100041359 3300005366 Bacteria 3603
23 Ga0070667_100013123 3300005367 Bacteria 6850
24 Ga0070678_100060146 3300005456 Unclassified 2795
25 Ga0070678_100182524 3300005456 Bacteria 1719
26 Ga0070662_100006394 3300005457 Bacteria 7592
27 Ga0070681_10050362 3300005458 Bacteria 4156
28 Ga0070681_10106523 3300005458 Bacteria 2745
29 Ga0068867_100329793 3300005459 Bacteria 1267
30 Ga0070679_100000287 3300005530 Bacteria 42861
31 Ga0070679_100007442 3300005530 Bacteria 10230
32 Ga0070679_100046587 3300005530 Bacteria 4321
33 Ga0068853_100015743 3300005539 Bacteria 6211
34 Ga0068853_100085563 3300005539 Bacteria 2764
35 Ga0068853_100151433 3300005539 Bacteria 2088
36 Ga0070672_100376465 3300005543 Bacteria 1214
37 Ga0068855_100031540 3300005563 Bacteria 6329
38 Ga0068855_100068040 3300005563 Bacteria 4147
39 Ga0068857_100017174 3300005577 Bacteria 6339
40 Ga0068856_100008009 3300005614 Bacteria 10315
41 Ga0068856_100209771 3300005614 Bacteria 1963
42 Ga0068852_100001786 3300005616 Bacteria 14607
43 Ga0068852_100005020 3300005616 Bacteria 9408
44 Ga0068852_100010519 3300005616 Bacteria 6920
45 Ga0068859_100245194 3300005617 Bacteria 1881
46 Ga0068864_100053029 3300005618 Bacteria 3497
47 Ga0068864_100137872 3300005618 Bacteria 2198
48 Ga0068851_10091598 3300005834 Bacteria 1601
49 Ga0068858_100302782 3300005842 Bacteria 1525
50 Ga0068860_100001650 3300005843 Bacteria 23869
51 Ga0068862_100005342 3300005844 Bacteria 10761
52 Ga0097621_100000408 3300006237 Bacteria 30010
53 Ga0097621_100021680 3300006237 Bacteria 4975
54 Ga0068871_100001316 3300006358 Bacteria 16589
55 Ga0068871_100023911 3300006358 Bacteria 4734
56 Ga0097620_100245205 3300006931 Bacteria 1881
57 Ga0105240_10000134 3300009093 Bacteria 151778
58 Ga0105240_10030354 3300009093 Bacteria 7026
59 Ga0105241_10006811 3300009174 Bacteria 8400
60 Ga0105241_10314916 3300009174 Bacteria 1347
61 Ga0105242_10047946 3300009176 Unclassified 3470
62 Ga0105248_10169935 3300009177 Bacteria 2457
63 Ga0105237_10006998 3300009545 Bacteria 12429
64 Ga0105237_10007123 3300009545 Bacteria 12288
65 Ga0105249_10030008 3300009553 Bacteria 4912
66 Ga0105239_10001268 3300010375 Bacteria 34104
67 Ga0105239_10013293 3300010375 Bacteria 9147
68 Ga0105239_10020203 3300010375 Bacteria 7347
69 Ga0157373_10000927 3300013100 Bacteria 22674
70 Ga0157373_10010570 3300013100 Bacteria 6791
71 Ga0157371_10003568 3300013102 Bacteria 14024
72 Ga0157371_10020300 3300013102 Bacteria 4891
73 Ga0157371_10093399 3300013102 Bacteria 2132
74 Ga0157371_10120913 3300013102 Bacteria 1862
75 Ga0157371_10215083 3300013102 Bacteria 1380
76 Ga0157370_10001029 3300013104 Bacteria 35080
77 Ga0157370_10359503 3300013104 Bacteria 1342
78 Ga0157370_10391565 3300013104 Bacteria 1279
79 Ga0157369_10027236 3300013105 Bacteria 6338
80 Ga0157369_10048117 3300013105 Bacteria 4627
81 Ga0157374_10143238 3300013296 Bacteria 2321
82 Ga0157378_10046698 3300013297 Bacteria 3849
83 Ga0157378_10057525 3300013297 Bacteria 3465
84 Ga0163162_10002819 3300013306 Bacteria 16526
85 Ga0163162_10005290 3300013306 Bacteria 12454
86 Ga0163162_10043180 3300013306 Bacteria 4514
87 Ga0157372_10007454 3300013307 Bacteria 11637
88 Ga0157372_10011073 3300013307 Bacteria 9597
89 Ga0157372_10024865 3300013307 Bacteria 6509
90 Ga0157372_10109449 3300013307 Bacteria 3164
91 Ga0157372_10117043 3300013307 Unclassified 3056
92 Ga0157372_10143211 3300013307 Bacteria 2756
93 Ga0157372_10150416 3300013307 Bacteria 2687
94 Ga0157375_10000534 3300013308 Bacteria 34107
95 Ga0157375_10035617 3300013308 Bacteria 4753
96 Ga0163163_10000368 3300014325 Bacteria 43257
97 Ga0163163_10132446 3300014325 Bacteria 2533
98 Ga0157377_10123336 3300014745 Bacteria 1573
99 Ga0157379_10009174 3300014968 Bacteria 8618
100 Ga0157379_10017714 3300014968 Bacteria 6276
101 Ga0157376_10000264 3300014969 Bacteria 35812
102 Ga0163161_10000594 3300017792 Bacteria 29004
103 Ga0163161_10015477 3300017792 Bacteria 5318
104 Ga0207426_1000211 3300025302 Bacteria 137322
105 Ga0207680_10308837 3300025903 Bacteria 1104
106 Ga0207705_10019610 3300025909 Bacteria 4835
107 Ga0207654_10171531 3300025911 Bacteria 1409
108 Ga0207707_10091667 3300025912 Bacteria 2656
109 Ga0207707_10200087 3300025912 Bacteria 1742
110 Ga0207695_10000010 3300025913 Bacteria 981919
111 Ga0207695_10016635 3300025913 Bacteria 8597
112 Ga0207657_10001042 3300025919 Bacteria 29332
113 Ga0207657_10004301 3300025919 Bacteria 15090
114 Ga0207652_10009477 3300025921 Bacteria 7828
115 Ga0207652_10046883 3300025921 Bacteria 3690
116 Ga0207706_10063241 3300025933 Bacteria 3258
117 Ga0207711_10144276 3300025941 Unclassified 2144
118 Ga0207679_10289999 3300025945 Bacteria 1406
119 Ga0207667_10023838 3300025949 Bacteria 6735
120 Ga0207667_10043596 3300025949 Bacteria 4760
121 Ga0207667_10062918 3300025949 Bacteria 3879
122 Ga0207640_10230475 3300025981 Bacteria 1424
123 Ga0207658_10052911 3300025986 Bacteria 2998
124 Ga0207677_10084209 3300026023 Bacteria 2291
125 Ga0207703_10172443 3300026035 Bacteria 1904
126 Ga0207639_10016811 3300026041 Bacteria 5182
127 Ga0207639_10022844 3300026041 Unclassified 4510
128 Ga0207639_10128206 3300026041 Bacteria 2096
129 Ga0207639_10272145 3300026041 Bacteria 1486
130 Ga0207702_10015116 3300026078 Bacteria 6400
131 Ga0207641_10022776 3300026088 Bacteria 5158
132 Ga0207676_10024062 3300026095 Bacteria 4503
133 Ga0207676_10313955 3300026095 Bacteria 1436
134 Ga0207674_10027579 3300026116 Bacteria 6005
135 Ga0207675_100185267 3300026118 Bacteria 1995
136 Ga0207675_100285166 3300026118 Bacteria 1605
137 Ga0207698_10024229 3300026142 Bacteria 4256
138 Ga0207698_10133817 3300026142 Unclassified 2123
139 Ga0268264_10001295 3300028381 Bacteria 23620
140 Ga0307515_10000001 3300028794 Bacteria 4259510
141 Ga0265338_10015266 3300028800 Bacteria 8457
142 Ga0265324_10011968 3300029957 Bacteria 3290
143 Ga0265327_10000006 3300031251 Bacteria 693716
144 Ga0265327_10000013 3300031251 Bacteria 519549
145 Ga0265327_10000361 3300031251 Bacteria 86574
146 Ga0265327_10025692 3300031251 Bacteria 3429
147 Ga0395899_0010855 3300037312 Bacteria 6981
148 Ga0395899_0055492 3300037312 Bacteria 2930
149 Ga0395900_0011085 3300037418 Bacteria 9212
150 Ga0395900_0011569 3300037418 Bacteria 9030
151 Ga0395900_0117128 3300037418 Bacteria 2733
152 Ga0395898_0040392 3300037466 Bacteria 4613
153 Ga0395898_0274282 3300037466 Bacteria 1608
154 Ga0395905_0011747 3300037471 Bacteria 8454
155 Ga0395905_0162310 3300037471 Bacteria 2100
156 Ga0395905_0171009 3300037471 Unclassified 2041
157 Ga0395901_0019966 3300038443 Bacteria 6855
158 Ga0395901_0323364 3300038443 Bacteria 1595
159 Ga0439436_0001370 3300041404 Bacteria 7018
160 Ga0466972_0000168 3300044658 Bacteria 51759
161 Ga0466972_0004440 3300044658 Bacteria 7019
162 Ga0466968_0022689 3300044735 Bacteria 2552
163 Ga0495642_0041207 3300046528 Unclassified 1878
164 Ga0495636_0002073 3300047318 Bacteria 7695
165 Ga0495672_0010411 3300047320 Bacteria 6628
166 Ga0496100_0055135 3300048903 Unclassified 2596
167 Ga0496106_0369533 3300048909 Bacteria 1152
168 Ga0496114_0038322 3300048917 Bacteria 3966
169 Ga0501038_0363685 3300049574 Unclassified 1125
170 nmdc:mga0k408_130410_c1 3300050493 Bacteria 1492

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031251 Ga0265327_10000361 Ga0265327_1000036131 300
2 3300013297 Ga0157378_10057525 Ga0157378_100575252 317
3 3300005459 Ga0068867_100329793 Ga0068867_1003297931 320
4 3300046528 Ga0495642_0041207 Ga0495642_0041207_121_1095 321
5 3300047318 Ga0495636_0002073 Ga0495636_0002073_4185_5159 321
6 iso_pu_bacteria 2818991444 2819585644 321
7 3300005331 Ga0070670_100120380 Ga0070670_1001203802 323
8 3300005456 Ga0070678_100060146 Ga0070678_1000601462 323
9 3300006237 Ga0097621_100000408 Ga0097621_1000004085 323
10 3300006358 Ga0068871_100001316 Ga0068871_10000131614 323
11 3300009176 Ga0105242_10047946 Ga0105242_100479463 323
12 3300009177 Ga0105248_10169935 Ga0105248_101699352 323
13 3300013102 Ga0157371_10215083 Ga0157371_102150831 323
14 3300013306 Ga0163162_10002819 Ga0163162_1000281914 323
15 3300013307 Ga0157372_10011073 Ga0157372_100110739 323
16 3300013308 Ga0157375_10000534 Ga0157375_1000053434 323
17 3300014325 Ga0163163_10000368 Ga0163163_1000036811 323
18 3300014968 Ga0157379_10017714 Ga0157379_100177142 323
19 3300014969 Ga0157376_10000264 Ga0157376_100002644 323
20 3300017792 Ga0163161_10000594 Ga0163161_1000059428 323
21 3300025941 Ga0207711_10144276 Ga0207711_101442762 323
22 3300026035 Ga0207703_10172443 Ga0207703_101724432 323
23 3300026095 Ga0207676_10024062 Ga0207676_100240621 323
24 3300029957 Ga0265324_10011968 Ga0265324_100119683 323
25 3300044658 Ga0466972_0000168 Ga0466972_0000168_7185_8156 323
26 3300044735 Ga0466968_0022689 Ga0466968_0022689_16_987 323
27 3300048903 Ga0496100_0055135 Ga0496100_0055135_1177_2166 323
28 3300048909 Ga0496106_0369533 Ga0496106_0369533_71_1060 323
29 3300048917 Ga0496114_0038322 Ga0496114_0038322_307_1296 323
30 3300003320 rootH2_10208208 rootH2_102082087 324
31 3300003354 JGI25160J50197_1001021 JGI25160J50197_10010217 324
32 3300009545 Ga0105237_10007123 Ga0105237_100071236 324
33 3300010375 Ga0105239_10020203 Ga0105239_100202034 324
34 3300013307 Ga0157372_10109449 Ga0157372_101094493 324
35 3300025302 Ga0207426_1000211 Ga0207426_100021147 324
36 3300028794 Ga0307515_10000001 Ga0307515_100000012322 324
37 3300028800 Ga0265338_10015266 Ga0265338_100152664 324
38 3300031251 Ga0265327_10000006 Ga0265327_10000006548 324
39 3300031251 Ga0265327_10025692 Ga0265327_100256922 324
40 3300049574 Ga0501038_0363685 Ga0501038_0363685_94_1068 324
41 3300005337 Ga0070682_100000019 Ga0070682_100000019130 325
42 3300005539 Ga0068853_100015743 Ga0068853_1000157433 325
43 3300005539 Ga0068853_100151433 Ga0068853_1001514332 325
44 3300005543 Ga0070672_100376465 Ga0070672_1003764651 325
45 3300005617 Ga0068859_100245194 Ga0068859_1002451942 325
46 3300006931 Ga0097620_100245205 Ga0097620_1002452052 325
47 3300009093 Ga0105240_10000134 Ga0105240_100001348 325
48 3300010375 Ga0105239_10001268 Ga0105239_100012682 325
49 3300025913 Ga0207695_10000010 Ga0207695_10000010382 325
50 3300026041 Ga0207639_10016811 Ga0207639_100168116 325
51 3300026041 Ga0207639_10128206 Ga0207639_101282062 325
52 3300026088 Ga0207641_10022776 Ga0207641_100227763 325
53 3300031251 Ga0265327_10000013 Ga0265327_10000013273 325
54 3300047320 Ga0495672_0010411 Ga0495672_0010411_4895_5872 325
55 3300003323 rootH1_10040787 rootH1_100407872 327
56 3300044658 Ga0466972_0004440 Ga0466972_0004440_2609_3607 328
57 3300050493 nmdc:mga0k408_130410_c1 nmdc:mga0k408_130410_c1_307_1305 328
58 3300005327 Ga0070658_10016202 Ga0070658_100162025 330
59 3300005327 Ga0070658_10101295 Ga0070658_101012953 330
60 3300005327 Ga0070658_10197373 Ga0070658_101973732 330
61 3300005336 Ga0070680_100047835 Ga0070680_1000478352 330
62 3300005337 Ga0070682_100002989 Ga0070682_1000029893 330
63 3300005339 Ga0070660_100001701 Ga0070660_1000017017 330
64 3300005366 Ga0070659_100041359 Ga0070659_1000413594 330
65 3300005458 Ga0070681_10050362 Ga0070681_100503622 330
66 3300005530 Ga0070679_100000287 Ga0070679_1000002876 330
67 3300005530 Ga0070679_100007442 Ga0070679_1000074425 330
68 3300005539 Ga0068853_100085563 Ga0068853_1000855632 330
69 3300005563 Ga0068855_100031540 Ga0068855_1000315403 330
70 3300005614 Ga0068856_100008009 Ga0068856_1000080093 330
71 3300005614 Ga0068856_100209771 Ga0068856_1002097712 330
72 3300005616 Ga0068852_100001786 Ga0068852_1000017865 330
73 3300005616 Ga0068852_100010519 Ga0068852_1000105195 330
74 3300005842 Ga0068858_100302782 Ga0068858_1003027822 330
75 3300009093 Ga0105240_10030354 Ga0105240_100303543 330
76 3300009174 Ga0105241_10006811 Ga0105241_100068115 330
77 3300009545 Ga0105237_10006998 Ga0105237_1000699812 330
78 3300009553 Ga0105249_10030008 Ga0105249_100300085 330
79 3300010375 Ga0105239_10013293 Ga0105239_100132936 330
80 3300013100 Ga0157373_10000927 Ga0157373_1000092718 330
81 3300013102 Ga0157371_10003568 Ga0157371_100035682 330
82 3300013102 Ga0157371_10020300 Ga0157371_100203001 330
83 3300013102 Ga0157371_10093399 Ga0157371_100933991 330
84 3300013102 Ga0157371_10120913 Ga0157371_101209132 330
85 3300013104 Ga0157370_10001029 Ga0157370_1000102930 330
86 3300013104 Ga0157370_10391565 Ga0157370_103915651 330
87 3300013105 Ga0157369_10048117 Ga0157369_100481171 330
88 3300013296 Ga0157374_10143238 Ga0157374_101432382 330
89 3300013306 Ga0163162_10005290 Ga0163162_1000529011 330
90 3300013307 Ga0157372_10007454 Ga0157372_100074544 330
91 3300013307 Ga0157372_10024865 Ga0157372_100248655 330
92 3300013307 Ga0157372_10143211 Ga0157372_101432112 330
93 3300013308 Ga0157375_10035617 Ga0157375_100356174 330
94 3300014968 Ga0157379_10009174 Ga0157379_100091742 330
95 3300017792 Ga0163161_10015477 Ga0163161_100154774 330
96 3300025909 Ga0207705_10019610 Ga0207705_100196101 330
97 3300025911 Ga0207654_10171531 Ga0207654_101715312 330
98 3300025912 Ga0207707_10091667 Ga0207707_100916672 330
99 3300025912 Ga0207707_10200087 Ga0207707_102000872 330
100 3300025913 Ga0207695_10016635 Ga0207695_100166352 330
101 3300025919 Ga0207657_10004301 Ga0207657_100043017 330
102 3300025921 Ga0207652_10009477 Ga0207652_100094774 330
103 3300025921 Ga0207652_10046883 Ga0207652_100468833 330
104 3300025949 Ga0207667_10023838 Ga0207667_100238386 330
105 3300025949 Ga0207667_10043596 Ga0207667_100435962 330
106 3300026041 Ga0207639_10022844 Ga0207639_100228442 330
107 3300026078 Ga0207702_10015116 Ga0207702_100151164 330
108 3300026118 Ga0207675_100285166 Ga0207675_1002851661 330
109 3300026142 Ga0207698_10024229 Ga0207698_100242294 330
110 3300026142 Ga0207698_10133817 Ga0207698_101338172 330
111 3300037312 Ga0395899_0010855 Ga0395899_0010855_5289_6311 330
112 3300037312 Ga0395899_0055492 Ga0395899_0055492_1207_2229 330
113 3300037418 Ga0395900_0011085 Ga0395900_0011085_4535_5557 330
114 3300037418 Ga0395900_0011569 Ga0395900_0011569_6378_7400 330
115 3300037418 Ga0395900_0117128 Ga0395900_0117128_637_1659 330
116 3300037466 Ga0395898_0040392 Ga0395898_0040392_2955_3977 330
117 3300037466 Ga0395898_0274282 Ga0395898_0274282_240_1262 330
118 3300037471 Ga0395905_0011747 Ga0395905_0011747_3088_4110 330
119 3300037471 Ga0395905_0162310 Ga0395905_0162310_956_1978 330
120 3300038443 Ga0395901_0019966 Ga0395901_0019966_749_1771 330
121 3300038443 Ga0395901_0323364 Ga0395901_0323364_167_1189 330
122 3300041404 Ga0439436_0001370 Ga0439436_0001370_4892_5896 330
123 3300003323 rootH1_10076471 rootH1_100764713 331
124 3300005367 Ga0070667_100013123 Ga0070667_1000131233 331
125 3300005618 Ga0068864_100053029 Ga0068864_1000530294 331
126 3300005834 Ga0068851_10091598 Ga0068851_100915982 331
127 3300005843 Ga0068860_100001650 Ga0068860_10000165017 331
128 3300005844 Ga0068862_100005342 Ga0068862_1000053425 331
129 3300014325 Ga0163163_10132446 Ga0163163_101324462 331
130 3300025986 Ga0207658_10052911 Ga0207658_100529113 331
131 3300026095 Ga0207676_10313955 Ga0207676_103139552 331
132 3300028381 Ga0268264_10001295 Ga0268264_1000129511 331
133 3300037471 Ga0395905_0171009 Ga0395905_0171009_801_1817 331
134 3300003320 rootH2_10001429 rootH2_1000142911 332
135 3300003322 rootL2_10106635 rootL2_101066351 332
136 3300005335 Ga0070666_10277700 Ga0070666_102777001 332
137 3300005338 Ga0068868_100009998 Ga0068868_1000099985 332
138 3300005339 Ga0070660_100035682 Ga0070660_1000356824 332
139 3300005344 Ga0070661_100103458 Ga0070661_1001034582 332
140 3300005354 Ga0070675_100125979 Ga0070675_1001259791 332
141 3300005364 Ga0070673_100012602 Ga0070673_1000126021 332
142 3300005456 Ga0070678_100182524 Ga0070678_1001825242 332
143 3300005457 Ga0070662_100006394 Ga0070662_1000063942 332
144 3300005458 Ga0070681_10106523 Ga0070681_101065232 332
145 3300005530 Ga0070679_100046587 Ga0070679_1000465874 332
146 3300005563 Ga0068855_100068040 Ga0068855_1000680405 332
147 3300005577 Ga0068857_100017174 Ga0068857_1000171744 332
148 3300005616 Ga0068852_100005020 Ga0068852_1000050205 332
149 3300005618 Ga0068864_100137872 Ga0068864_1001378721 332
150 3300006237 Ga0097621_100021680 Ga0097621_1000216804 332
151 3300006358 Ga0068871_100023911 Ga0068871_1000239112 332
152 3300009174 Ga0105241_10314916 Ga0105241_103149162 332
153 3300013100 Ga0157373_10010570 Ga0157373_100105704 332
154 3300013104 Ga0157370_10359503 Ga0157370_103595031 332
155 3300013105 Ga0157369_10027236 Ga0157369_100272366 332
156 3300013297 Ga0157378_10046698 Ga0157378_100466984 332
157 3300013306 Ga0163162_10043180 Ga0163162_100431804 332
158 3300013307 Ga0157372_10117043 Ga0157372_101170432 332
159 3300013307 Ga0157372_10150416 Ga0157372_101504161 332
160 3300014745 Ga0157377_10123336 Ga0157377_101233362 332
161 3300025903 Ga0207680_10308837 Ga0207680_103088371 332
162 3300025919 Ga0207657_10001042 Ga0207657_100010429 332
163 3300025933 Ga0207706_10063241 Ga0207706_100632412 332
164 3300025945 Ga0207679_10289999 Ga0207679_102899992 332
165 3300025949 Ga0207667_10062918 Ga0207667_100629182 332
166 3300025981 Ga0207640_10230475 Ga0207640_102304751 332
167 3300026023 Ga0207677_10084209 Ga0207677_100842092 332
168 3300026041 Ga0207639_10272145 Ga0207639_102721452 332
169 3300026116 Ga0207674_10027579 Ga0207674_100275795 332
170 3300026118 Ga0207675_100185267 Ga0207675_1001852673 332

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

29

251

0.87

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

30

235

0.85

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

30

191

0.84

PF04321

RmlD_sub_bind

RmlD substrate binding domain

27

321

0.81

PF07993

NAD_binding_4

Male sterility protein

78

258

0.81

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

29

146

0.8

PF05368

NmrA

NmrA-like family

29

155

0.8

PF13460

NAD_binding_10

NAD(P)H-binding

33

208

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
2x4g-assembly1.cif.gz_A-2 crystal structure of pa4631, a nucleoside-diphosphate-sugar epimerase from pseudomonas aeruginosa 0.8737 7 332
3m2p-assembly1.cif.gz_B the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.8725 7 326
3m2p-assembly3.cif.gz_E the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.8674 7 326
2x4g-assembly1.cif.gz_A-2 crystal structure of pa4631, a nucleoside-diphosphate-sugar epimerase from pseudomonas aeruginosa 0.8657 7 332
3m2p-assembly1.cif.gz_B the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.8628 7 326
ID Description Score Start End Superfamily
af_Q94HG6_1_340_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9116 8 332 3.40.50.720
af_A0A1D6MTK5_41_178_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8998 6 119 3.40.50.720
af_P96816_2_332_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8931 8 329 3.40.50.720
af_Q94HG6_1_340_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8907 8 332 3.40.50.720
2x4gA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8737 7 332 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A4Q3SZP6-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9697 82 328 GO:0004029
GO:0005737
AF-A0A6J4SK18-F1-model_v4 Dihydroflavonol-4-reductase (EC 1.1.1.219) 0.9692 66 328 GO:0004029
GO:0005737
GO:0045552
AF-A0A0M9DQH7-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9668 7 323 GO:0004029
GO:0005737
AF-A0A3M1BKM0-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9658 123 330 GO:0004029
GO:0005737
AF-A0A4Q3D2R7-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9657 7 328 GO:0004029
GO:0005737

Feature Viewer

pLDDT pTM Quality
90.34 0.9 High
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Predicted Structure (AlphaFold2)

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