F255511

General Info

Members Datasets Scaffolds Average Seq Length
169 121 338 570

Family's Representative Sequence

Representative Sequence 3300049569|Ga0501032_0024470|Ga0501032_0024470_1647_3416
Length 589
Sequence MSSGLGGLGVESSGVSGGAAEAAVVRLPQLRLDELLEELQARLDAARGTRDRVHSLLEAVLSVGRELDLEHVLHSIVDAAATLVDAEYAALGVIGPDGKRLSAFLTVGVSEEQIARIGPYPEGHGILGELIRHPEPLRLAKLSEHPASYGFPAHHPPMNSFLGVPIRVREQVFGNLYLTEKRGGLEFDEEDESVLSTLAVAAGVAIDNARLYEESRLRERWLRASAEITHGLMSGAAQAEVLGLIAERAREITGSALAVMSTPVRNTDTLTVELAIGRQAEAHRGLVLPVEGTLTGRAFAGGAPVTSDDVGTDDRVTAGPPRFAGLGPAMAVPIGAGESIRGVLLLARGTGAPGFSGKDVEPLKSFAAQAALAMELAERRKDAEQIAVLEDRDRIARDLHDLAIQRLFATGMTLQSAGRLVDHAGAKERVLRAVDDLDETIKIIRSTIFGLRTHDDEAAPGLRARAVRVVGEATRVMGFAPSVRMEGLLDTHVPRDTADHVVAVLSESLTNIARHAHADRAEVTLETDGRTVRLTVRDNGVGIPAEGRRSGLANMAARARELGGDLEWSTPEDGGTRLVWQAPVSGAGR

Samples

Sample ID Description Type Environment
1 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
10 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
11 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
12 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
13 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
14 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
15 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
16 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
17 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
18 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
19 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
20 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
21 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
22 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
23 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
24 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
25 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
26 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
27 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
28 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
29 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
30 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
31 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
32 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
33 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
34 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
35 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
36 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
37 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
38 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
39 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
40 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
41 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
42 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
43 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
44 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
45 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
46 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
47 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
48 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
49 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
50 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
51 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
52 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
53 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
54 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
55 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
56 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
57 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
58 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
59 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
60 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
61 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
62 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
63 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
75 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
76 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
78 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
79 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
80 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
81 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
82 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
83 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
84 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
85 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
86 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
87 2643221647 Streptomyces sp. Root369 Isolate Unclassified
88 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
89 2643221714 Streptomyces sp. Root264 Isolate Unclassified
90 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
91 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
92 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
93 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
94 2808606448 Streptomyces sp. 193411 Isolate Unclassified
95 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
96 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
97 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
98 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
99 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
100 2867428634 Streptomyces sp. RP5T Isolate Unclassified
101 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
102 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
103 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
104 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
105 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
106 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
107 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
108 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
109 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
110 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
111 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
112 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
113 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
114 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
115 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
116 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
117 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
118 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
119 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
120 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
121 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 67.46
Metatranscriptomes 0.59
Isolates 31.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.92
Nodule 0
Rhizoplane 0
Rhizosphere 68.64
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501032_0024470 3300049569 Bacteria 4169
2 JGI24737J22298_10022989 3300001990 Bacteria 1979
3 rootH1_10002093 3300003316 Bacteria 47305
4 rootH2_10006968 3300003320 Bacteria 10696
5 rootH1_10027131 3300003323 Bacteria 8712
6 Ga0006562J51391_1070190 3300003578 Bacteria 4820
7 Ga0068855_100146177 3300005563 Bacteria 2691
8 Ga0075365_10041878 3300006038 Bacteria 2993
9 Ga0075368_10003630 3300006042 Bacteria 5171
10 Ga0075363_100002526 3300006048 Bacteria 7502
11 Ga0075367_10000025 3300006178 Bacteria 32025
12 Ga0182006_1018381 3300015261 Bacteria 2954
13 Ga0183367_1012 3300015688 Bacteria 347438
14 Ga0209813_10002245 3300027866 Bacteria 4412
15 Ga0307517_10057491 3300028786 Bacteria 3766
16 Ga0307515_10000683 3300028794 Bacteria 78103
17 Ga0307515_10004010 3300028794 Bacteria 30732
18 Ga0307511_10003768 3300030521 Bacteria 15513
19 Ga0307509_10019952 3300031507 Bacteria 7622
20 Ga0307509_10024998 3300031507 Bacteria 6678
21 Ga0307509_10029873 3300031507 Bacteria 6040
22 Ga0307509_10032881 3300031507 Bacteria 5713
23 Ga0307508_10005538 3300031616 Bacteria 11996
24 Ga0307508_10010749 3300031616 Bacteria 8368
25 Ga0307518_10005430 3300031838 Bacteria 9116
26 Ga0307518_10016627 3300031838 Bacteria 5272
27 Ga0307507_10006176 3300033179 Bacteria 18695
28 Ga0307507_10015177 3300033179 Bacteria 9086
29 Ga0307507_10028508 3300033179 Bacteria 5949
30 Ga0307510_10001830 3300033180 Bacteria 23821
31 Ga0451837_0200659 3300041494 Bacteria 3585
32 Ga0439448_0017196 3300042005 Bacteria 2207
33 Ga0439455_0000791 3300042012 Bacteria 4787
34 Ga0439457_000888 3300042014 Bacteria 9036
35 Ga0450899_000944 3300042135 Bacteria 3306
36 Ga0466972_0001518 3300044658 Bacteria 11308
37 Ga0466972_0004169 3300044658 Bacteria 7218
38 Ga0466965_0000518 3300044683 Bacteria 13770
39 Ga0466961_0000640 3300044693 Bacteria 21980
40 Ga0466963_0000047 3300044694 Bacteria 40057
41 Ga0466963_0007036 3300044694 Bacteria 6700
42 Ga0466971_0000233 3300044719 Bacteria 21193
43 Ga0466970_0000378 3300044765 Bacteria 21629
44 Ga0466957_0000319 3300044842 Bacteria 23345
45 Ga0466960_0030561 3300044901 Bacteria 2479
46 Ga0466959_0000616 3300045049 Bacteria 20739
47 Ga0466959_0004910 3300045049 Bacteria 9057
48 Ga0466958_0000122 3300045836 Bacteria 25398
49 Ga0466967_0010351 3300045976 Bacteria 6991
50 Ga0466967_0038137 3300045976 Bacteria 4118
51 Ga0495592_0056458 3300046454 Bacteria 2902
52 Ga0495603_0011296 3300046455 Bacteria 5410
53 Ga0495629_0004118 3300046459 Bacteria 10909
54 Ga0495629_0005235 3300046459 Bacteria 9700
55 Ga0495629_0013697 3300046459 Bacteria 5851
56 Ga0495582_0056612 3300046473 Bacteria 2161
57 Ga0495639_0008902 3300046475 Bacteria 4303
58 Ga0495662_0001620 3300046476 Bacteria 11192
59 Ga0495662_0001704 3300046476 Bacteria 10982
60 Ga0495662_0028726 3300046476 Bacteria 2685
61 Ga0495662_0030828 3300046476 Bacteria 2589
62 Ga0495640_0031120 3300046533 Bacteria 3812
63 Ga0495586_0020364 3300046535 Bacteria 3533
64 Ga0495587_0014561 3300046536 Bacteria 4928
65 Ga0495634_0001467 3300046642 Bacteria 20897
66 Ga0495635_0010702 3300046663 Bacteria 6423
67 Ga0495588_0000515 3300046674 Bacteria 18686
68 Ga0495588_0011872 3300046674 Bacteria 4100
69 Ga0495588_0029774 3300046674 Bacteria 2741
70 Ga0495657_0015024 3300046675 Bacteria 5678
71 Ga0495657_0016360 3300046675 Bacteria 5404
72 Ga0495623_0024961 3300046679 Bacteria 3851
73 Ga0495646_0002867 3300046680 Bacteria 10675
74 Ga0495658_0010121 3300046683 Bacteria 4712
75 Ga0495613_0027342 3300046689 Bacteria 4245
76 Ga0495613_0028930 3300046689 Bacteria 4121
77 Ga0495671_0018613 3300046692 Bacteria 3684
78 Ga0495581_0024048 3300047315 Bacteria 3530
79 Ga0495676_0004167 3300047321 Bacteria 13196
80 Ga0495687_003665 3300047443 Bacteria 10940
81 Ga0495675_0010807 3300047444 Bacteria 5721
82 Ga0495675_0011960 3300047444 Bacteria 5454
83 Ga0495675_0048871 3300047444 Bacteria 2690
84 Ga0495681_0000595 3300047470 Bacteria 27599
85 Ga0495614_0002291 3300048089 Bacteria 8506
86 Ga0495614_0013390 3300048089 Bacteria 3597
87 Ga0501033_0000596 3300049570 Bacteria 33450
88 Ga0501033_0001250 3300049570 Bacteria 22764
89 Ga0501033_0058442 3300049570 Bacteria 2848
90 Ga0501034_0002302 3300049571 Bacteria 23386
91 Ga0501036_0001107 3300049572 Bacteria 20472
92 Ga0501037_0002043 3300049573 Bacteria 14631
93 Ga0501037_0004333 3300049573 Bacteria 10300
94 Ga0501038_0001274 3300049574 Bacteria 22859
95 Ga0501039_0009957 3300049575 Bacteria 7247
96 Ga0501039_0061495 3300049575 Bacteria 2909
97 Ga0501042_0034966 3300049578 Bacteria 3565
98 Ga0501043_0015131 3300049579 Bacteria 6036
99 Ga0501043_0066145 3300049579 Bacteria 2838
100 Ga0501046_0024645 3300049580 Bacteria 4931
101 Ga0501046_0118865 3300049580 Bacteria 2012
102 Ga0501047_0084113 3300049581 Bacteria 3058
103 Ga0501047_0128180 3300049581 Bacteria 2417
104 Ga0501048_0002436 3300049582 Bacteria 14203
105 Ga0501070_0001030 3300049586 Bacteria 25055
106 Ga0501080_0121627 3300049742 Bacteria 2419
107 Ga0501035_0012436 3300049822 Bacteria 7867
108 Ga0501035_0063804 3300049822 Bacteria 3275
109 Ga0501044_0003243 3300049823 Bacteria 18291
110 nmdc:mga03n38_17390_c1 3300050490 Bacteria 2815
111 nmdc:mga06z11_466_c1 3300050494 Bacteria 15075
112 nmdc:mga04h51_1319_c1 3300050495 Bacteria 5719
113 Ga0500640_002281 3300053095 Bacteria 6278
114 Ga0500560_000448 3300053107 Bacteria 5682
115 Ga0466962_0000181 3300061719 Bacteria 26153
116 2547412955 2547132111 Bacteria 8013147
117 2585321436 2582581314 Bacteria 11452267
118 2644175662 2643221631 Bacteria 8168043
119 2644267228 2643221647 Bacteria 10741251
120 2644440450 2643221678 Bacteria 9540101
121 2644627852 2643221714 Bacteria 9015452
122 2785339442 2784746763 Bacteria 9783172
123 2785340243 2784746763 Bacteria 9783172
124 2786667440 2786546132 Bacteria 10419719
125 2786667987 2786546132 Bacteria 10419719
126 2808845943 2808606359 Bacteria 9866990
127 2808917650 2808606375 Bacteria 9466072
128 2809235710 2808606448 Bacteria 8656184
129 2811842467 2808606982 Bacteria 7791042
130 2812483141 2811994917 Bacteria 7761064
131 2862282179 2862281513 Bacteria 9621493
132 2862282213 2862281513 Bacteria 9621493
133 2862515833 2862507626 Bacteria 9425308
134 2863407161 2863404153 Bacteria 9672205
135 2863410950 2863404153 Bacteria 9672205
136 2863410958 2863404153 Bacteria 9672205
137 2867437080 2867428634 Bacteria 9590268
138 2877676622 2877676314 Bacteria 9512378
139 2912715722 2912715099 Bacteria 9460473
140 2912763448 2912757875 Bacteria 7940295
141 2919470761 2919468124 Bacteria 9133025
142 2954010772 2954002825 Bacteria 9173742
143 2954389844 2954380949 Bacteria 10050426
144 2954673593 2954673503 Bacteria 9685905
145 2954674273 2954673503 Bacteria 9685905
146 2954689858 2954682443 Bacteria 9862841
147 2954690397 2954682443 Bacteria 9862841
148 2954700331 2954691527 Bacteria 10720516
149 2954700790 2954691527 Bacteria 10720516
150 2954701901 2954701450 Bacteria 10834262
151 2954706556 2954701450 Bacteria 10834262
152 2954712663 2954711539 Bacteria 10867210
153 2954719385 2954711539 Bacteria 10867210
154 2954722621 2954721474 Bacteria 10456478
155 2954729356 2954721474 Bacteria 10456478
156 2954732452 2954731030 Bacteria 10243860
157 2954739240 2954731030 Bacteria 10243860
158 2954741499 2954740390 Bacteria 10229294
159 2954748258 2954740390 Bacteria 10229294
160 2954751331 2954749733 Bacteria 10366972
161 2954758068 2954749733 Bacteria 10366972
162 2954760513 2954759201 Bacteria 9358192
163 2954767382 2954759201 Bacteria 9358192
164 2995464403 2995463766 Bacteria 8577691
165 3006497649 3006493962 Bacteria 8825450
166 3006498527 3006493962 Bacteria 8825450
167 8023623842 8023623736 Bacteria 8593882
168 8048411337 8048406513 Bacteria 8936924
169 8056836414 8056829672 Bacteria 9045328
170 Ga0501032_0024470
171 JGI24737J22298_10022989
172 rootH1_10002093
173 rootH2_10006968
174 rootH1_10027131
175 Ga0006562J51391_1070190
176 Ga0068855_100146177
177 Ga0075365_10041878
178 Ga0075368_10003630
179 Ga0075363_100002526
180 Ga0075367_10000025
181 Ga0182006_1018381
182 Ga0183367_1012
183 Ga0209813_10002245
184 Ga0307517_10057491
185 Ga0307515_10000683
186 Ga0307515_10004010
187 Ga0307511_10003768
188 Ga0307509_10019952
189 Ga0307509_10024998
190 Ga0307509_10029873
191 Ga0307509_10032881
192 Ga0307508_10005538
193 Ga0307508_10010749
194 Ga0307518_10005430
195 Ga0307518_10016627
196 Ga0307507_10006176
197 Ga0307507_10015177
198 Ga0307507_10028508
199 Ga0307510_10001830
200 Ga0451837_0200659
201 Ga0439448_0017196
202 Ga0439455_0000791
203 Ga0439457_000888
204 Ga0450899_000944
205 Ga0466972_0001518
206 Ga0466972_0004169
207 Ga0466965_0000518
208 Ga0466961_0000640
209 Ga0466963_0000047
210 Ga0466963_0007036
211 Ga0466971_0000233
212 Ga0466970_0000378
213 Ga0466957_0000319
214 Ga0466960_0030561
215 Ga0466959_0000616
216 Ga0466959_0004910
217 Ga0466958_0000122
218 Ga0466967_0010351
219 Ga0466967_0038137
220 Ga0495592_0056458
221 Ga0495603_0011296
222 Ga0495629_0004118
223 Ga0495629_0005235
224 Ga0495629_0013697
225 Ga0495582_0056612
226 Ga0495639_0008902
227 Ga0495662_0001620
228 Ga0495662_0001704
229 Ga0495662_0028726
230 Ga0495662_0030828
231 Ga0495640_0031120
232 Ga0495586_0020364
233 Ga0495587_0014561
234 Ga0495634_0001467
235 Ga0495635_0010702
236 Ga0495588_0000515
237 Ga0495588_0011872
238 Ga0495588_0029774
239 Ga0495657_0015024
240 Ga0495657_0016360
241 Ga0495623_0024961
242 Ga0495646_0002867
243 Ga0495658_0010121
244 Ga0495613_0027342
245 Ga0495613_0028930
246 Ga0495671_0018613
247 Ga0495581_0024048
248 Ga0495676_0004167
249 Ga0495687_003665
250 Ga0495675_0010807
251 Ga0495675_0011960
252 Ga0495675_0048871
253 Ga0495681_0000595
254 Ga0495614_0002291
255 Ga0495614_0013390
256 Ga0501033_0000596
257 Ga0501033_0001250
258 Ga0501033_0058442
259 Ga0501034_0002302
260 Ga0501036_0001107
261 Ga0501037_0002043
262 Ga0501037_0004333
263 Ga0501038_0001274
264 Ga0501039_0009957
265 Ga0501039_0061495
266 Ga0501042_0034966
267 Ga0501043_0015131
268 Ga0501043_0066145
269 Ga0501046_0024645
270 Ga0501046_0118865
271 Ga0501047_0084113
272 Ga0501047_0128180
273 Ga0501048_0002436
274 Ga0501070_0001030
275 Ga0501080_0121627
276 Ga0501035_0012436
277 Ga0501035_0063804
278 Ga0501044_0003243
279 nmdc:mga03n38_17390_c1
280 nmdc:mga06z11_466_c1
281 nmdc:mga04h51_1319_c1
282 Ga0500640_002281
283 Ga0500560_000448
284 Ga0466962_0000181
285 2547412955
286 2585321436
287 2644175662
288 2644267228
289 2644440450
290 2644627852
291 2785339442
292 2785340243
293 2786667440
294 2786667987
295 2808845943
296 2808917650
297 2809235710
298 2811842467
299 2812483141
300 2862282179
301 2862282213
302 2862515833
303 2863407161
304 2863410950
305 2863410958
306 2867437080
307 2877676622
308 2912715722
309 2912763448
310 2919470761
311 2954010772
312 2954389844
313 2954673593
314 2954674273
315 2954689858
316 2954690397
317 2954700331
318 2954700790
319 2954701901
320 2954706556
321 2954712663
322 2954719385
323 2954722621
324 2954729356
325 2954732452
326 2954739240
327 2954741499
328 2954748258
329 2954751331
330 2954758068
331 2954760513
332 2954767382
333 2995464403
334 3006497649
335 3006498527
336 8023623842
337 8048411337
338 8056836414

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07730

HisKA_3

Histidine kinase

391

456

0.95

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

496

586

0.9

PF13185

GAF_2

GAF domain

236

375

0.89

PF01590

GAF

GAF domain

68

206

0.85

PF13185

GAF_2

GAF domain

66

207

0.85

PF01590

GAF

GAF domain

239

374

0.81

PF13581

HATPase_c_2

Histidine kinase-like ATPase domain

482

565

0.81

PF13492

GAF_3

GAF domain

68

208

0.78

PF13492

GAF_3

GAF domain

239

376

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
2vzw-assembly1.cif.gz_A x-ray structure of the heme-bound gaf domain of sensory histidine kinase dost of mycobacterium tuberculosis 0.9331 56 194
2w3h-assembly1.cif.gz_B cyanide bound structure of the first gaf domain of mycobacterium tuberculosis doss 0.9241 54 193
2y79-assembly1.cif.gz_B structure of the first gaf domain e87a mutant of mycobacterium tuberculosis doss 0.9239 54 196
2y8h-assembly1.cif.gz_B structure of the first gaf domain e87g mutant of mycobacterium tuberculosis doss 0.9148 54 195
4ynr-assembly1.cif.gz_A doss gafa domain reduced co bound crystal structure 0.9097 55 192
ID Description Score Start End Superfamily
4ynrA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9097 55 192 3.30.450.40
4ynrA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.8912 55 192 3.30.450.40
2vjwA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.8864 225 366 3.30.450.40
af_P0AFA2_454_587_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8849 440 571 3.30.565.10
3zxoB00 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8827 446 567 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A5S4G1C0-F1-model_v4 Histidine kinase 0.9868 449 571 GO:0000160
GO:0016301
AF-A0A5S4G1C0-F1-model_v4 Histidine kinase 0.971 449 571 GO:0000160
GO:0016301
AF-A0A7Y1TSS0-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9117 445 568 GO:0000160
GO:0016301
AF-A0A6G1SXT5-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8891 467 570 GO:0000160
GO:0016301
AF-A0A6P0QXP6-F1-model_v4 deleted 0.8822 443 569

Map