F253002

General Info

Members Datasets Scaffolds Average Seq Length
168 115 336 175

Family's Representative Sequence

Representative Sequence 3300035086|Ga0373934_0114334|Ga0373934_0114334_226_825
Length 199
Sequence MVRNRVTLRYNNLCWISERSSKPQASGMFLNIKEMELRRIRFDEDFEPGEIDFSETGLRQATAIHAEGSAKVLENSGGEVRIQGKFSGVMEADCDRCLAIASLPLDNSFDLFYRPPPVIAEDEVKIDEGEAEIGFYEGLGLELADVIKEQILLATPMQRVCREDCKGMCPVCGGNRNEVVCDCHVRPADDRWKALENLR

Samples

Sample ID Description Type Environment
1 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
24 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300019166 Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU1 metaT (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
52 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
55 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
71 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
72 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
73 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
74 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
75 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
76 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
77 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
78 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
79 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
80 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
81 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
82 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
83 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
84 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
85 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
86 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
87 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
88 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
89 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
90 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
91 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
92 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
93 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
94 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
95 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
96 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
99 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
100 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
101 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
102 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
103 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
104 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
105 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
106 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
107 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
114 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.43
Metatranscriptomes 3.57
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.6
Rhizosphere 97.02
Stem 0
Stem Tuber 0
Unclassified 36.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373934_0114334 3300035086 Bacteria 1096
2 Ga0070683_100078161 3300005329 Unclassified 3095
3 Ga0070680_100679364 3300005336 Unclassified 886
4 Ga0070682_100180756 3300005337 Unclassified 1473
5 Ga0070671_100053136 3300005355 Unclassified 3368
6 Ga0070713_100004733 3300005436 Bacteria 9201
7 Ga0070713_100578911 3300005436 Unclassified 1065
8 Ga0070711_100067335 3300005439 Bacteria 2512
9 Ga0070711_100200656 3300005439 Unclassified 1539
10 Ga0070694_100129761 3300005444 Bacteria 1819
11 Ga0070708_100129146 3300005445 Bacteria 2338
12 Ga0070681_10151637 3300005458 Bacteria 2244
13 Ga0070698_100394927 3300005471 Bacteria 1316
14 Ga0070699_100064866 3300005518 Bacteria 3168
15 Ga0070684_100000002 3300005535 Bacteria 257669
16 Ga0070684_100083420 3300005535 Unclassified 2832
17 Ga0070684_100099123 3300005535 Unclassified 2600
18 Ga0070695_100038735 3300005545 Bacteria 3011
19 Ga0070696_100001970 3300005546 Bacteria 13471
20 Ga0070665_100113476 3300005548 Bacteria 2713
21 Ga0070665_100664439 3300005548 Bacteria 1055
22 Ga0070704_100050804 3300005549 Bacteria 2917
23 Ga0070704_100363387 3300005549 Unclassified 1225
24 Ga0068857_100539145 3300005577 Bacteria 1098
25 Ga0068859_100144648 3300005617 Bacteria 2452
26 Ga0068863_100346128 3300005841 Bacteria 1447
27 Ga0068863_101426988 3300005841 Unclassified 700
28 Ga0068858_100878667 3300005842 Unclassified 876
29 Ga0070717_10164211 3300006028 Bacteria 1928
30 Ga0070716_100400753 3300006173 Bacteria 986
31 Ga0070716_100405302 3300006173 Bacteria 982
32 Ga0068871_100331513 3300006358 Unclassified 1342
33 Ga0068871_101376453 3300006358 Bacteria 665
34 Ga0075431_100009553 3300006847 Bacteria 9742
35 Ga0075433_10710063 3300006852 Unclassified 880
36 Ga0075436_100002134 3300006914 Bacteria 13623
37 Ga0097620_100144653 3300006931 Bacteria 2452
38 Ga0105240_10003870 3300009093 Bacteria 23121
39 Ga0105240_10005171 3300009093 Bacteria 19512
40 Ga0105240_10037297 3300009093 Bacteria 6248
41 Ga0105245_10103039 3300009098 Bacteria 2643
42 Ga0105247_10312876 3300009101 Unclassified 1093
43 Ga0105247_10473221 3300009101 Unclassified 908
44 Ga0114129_11690828 3300009147 Bacteria 772
45 Ga0114129_11694299 3300009147 Bacteria 771
46 Ga0105241_10649853 3300009174 Bacteria 958
47 Ga0105242_10405062 3300009176 Unclassified 1274
48 Ga0105242_10620421 3300009176 Bacteria 1047
49 Ga0105242_11139609 3300009176 Unclassified 796
50 Ga0105248_10290275 3300009177 Bacteria 1842
51 Ga0105248_10343115 3300009177 Unclassified 1681
52 Ga0105248_10616051 3300009177 Bacteria 1225
53 Ga0105248_11709098 3300009177 Unclassified 713
54 Ga0105248_11987789 3300009177 Unclassified 660
55 Ga0105237_10315947 3300009545 Bacteria 1565
56 Ga0105237_10747694 3300009545 Unclassified 984
57 Ga0105237_10868896 3300009545 Unclassified 909
58 Ga0105237_12047906 3300009545 Unclassified 581
59 Ga0105238_10024845 3300009551 Bacteria 6107
60 Ga0105238_10264150 3300009551 Bacteria 1701
61 Ga0105238_10503920 3300009551 Unclassified 1212
62 Ga0105239_10237847 3300010375 Bacteria 2044
63 Ga0105239_10370061 3300010375 Bacteria 1619
64 Ga0157370_10481148 3300013104 Unclassified 1141
65 Ga0157369_10085114 3300013105 Bacteria 3379
66 Ga0157369_10113891 3300013105 Bacteria 2873
67 Ga0157374_10455548 3300013296 Unclassified 1281
68 Ga0157374_10708216 3300013296 Bacteria 1020
69 Ga0157378_11073780 3300013297 Archaea 841
70 Ga0163162_11201059 3300013306 Unclassified 861
71 Ga0157375_11680626 3300013308 Unclassified 751
72 Ga0163163_10062107 3300014325 Bacteria 3701
73 Ga0163163_10952159 3300014325 Bacteria 922
74 Ga0157377_10985450 3300014745 Unclassified 637
75 Ga0157376_10877160 3300014969 Unclassified 914
76 Ga0163161_10410516 3300017792 Unclassified 1087
77 Ga0184595_116542 3300019166 Unclassified 630
78 Ga0197907_10515109 3300020069 Bacteria 1746
79 Ga0206355_1415746 3300020076 Bacteria 1882
80 Ga0206352_10002734 3300020078 Bacteria 1985
81 Ga0154015_1653097 3300020610 Unclassified 723
82 Ga0213875_10028082 3300021388 Bacteria 2675
83 Ga0224712_10031167 3300022467 Bacteria 1932
84 Ga0207707_10021404 3300025912 Bacteria 5653
85 Ga0207707_10133977 3300025912 Bacteria 2167
86 Ga0207707_10304412 3300025912 Unclassified 1378
87 Ga0207695_10004029 3300025913 Bacteria 20229
88 Ga0207695_10014070 3300025913 Bacteria 9501
89 Ga0207695_10039845 3300025913 Bacteria 5046
90 Ga0207671_10014573 3300025914 Bacteria 6202
91 Ga0207663_10046686 3300025916 Bacteria 2670
92 Ga0207694_10114234 3300025924 Bacteria 2150
93 Ga0207694_10261094 3300025924 Bacteria 1419
94 Ga0207700_10005599 3300025928 Bacteria 7538
95 Ga0207644_10315813 3300025931 Unclassified 1262
96 Ga0207665_10212083 3300025939 Unclassified 1415
97 Ga0207711_10193965 3300025941 Bacteria 1852
98 Ga0207711_10281479 3300025941 Bacteria 1532
99 Ga0207661_10000008 3300025944 Bacteria 451211
100 Ga0207661_10076445 3300025944 Bacteria 2750
101 Ga0207668_10521983 3300025972 Unclassified 1025
102 Ga0207677_10630925 3300026023 Bacteria 944
103 Ga0207698_11180209 3300026142 Unclassified 779
104 Ga0265338_10057621 3300028800 Bacteria 3435
105 Ga0265330_10168206 3300031235 Unclassified 930
106 Ga0265330_10200622 3300031235 Bacteria 843
107 Ga0265328_10014121 3300031239 Bacteria 3149
108 Ga0265320_10041477 3300031240 Bacteria 2287
109 Ga0265329_10039317 3300031242 Bacteria 1520
110 Ga0265340_10053499 3300031247 Bacteria 1950
111 Ga0265340_10108927 3300031247 Unclassified 1282
112 Ga0265339_10035968 3300031249 Bacteria 2773
113 Ga0265339_10305795 3300031249 Unclassified 757
114 Ga0265331_10019862 3300031250 Bacteria 3460
115 Ga0265316_10001880 3300031344 Bacteria 22044
116 Ga0265316_10037791 3300031344 Unclassified 3893
117 Ga0265316_10049924 3300031344 Bacteria 3293
118 Ga0265316_10265463 3300031344 Bacteria 1257
119 Ga0265316_10268485 3300031344 Bacteria 1249
120 Ga0265314_10003050 3300031711 Bacteria 16520
121 Ga0265342_10098716 3300031712 Bacteria 1666
122 Ga0373926_0077436 3300035083 Unclassified 1227
123 Ga0373956_0095665 3300035119 Unclassified 1373
124 Ga0373943_0155456 3300035170 Unclassified 1242
125 Ga0373955_0831614 3300035172 Unclassified 568
126 Ga0373931_0111572 3300035691 Unclassified 1552
127 Ga0373935_0129843 3300035692 Unclassified 1692
128 Ga0373935_0360527 3300035692 Unclassified 1038
129 Ga0373927_0002408 3300035695 Bacteria 13627
130 Ga0373927_0393815 3300035695 Unclassified 914
131 Ga0373933_0264534 3300035724 Unclassified 1109
132 Ga0373947_0002256 3300035725 Bacteria 11644
133 Ga0373947_0162118 3300035725 Bacteria 1447
134 Ga0373937_0014121 3300036401 Bacteria 7044
135 Ga0373925_0000526 3300037068 Bacteria 38028
136 Ga0373925_0984220 3300037068 Unclassified 695
137 Ga0436364_1082106 3300037853 Bacteria 6429
138 Ga0436365_0090871 3300039437 Bacteria 4111
139 Ga0451839_0140865 3300041496 Bacteria 804
140 Ga0451576_0347972 3300045051 Unclassified 1552
141 Ga0466958_0145803 3300045836 Unclassified 1492
142 Ga0495580_0017307 3300046472 Bacteria 5393
143 Ga0495580_0033811 3300046472 Bacteria 3682
144 Ga0495580_0390805 3300046472 Bacteria 939
145 Ga0495580_0392393 3300046472 Bacteria 937
146 Ga0495652_0479734 3300046529 Unclassified 866
147 Ga0495586_0336557 3300046535 Unclassified 866
148 Ga0495645_0074237 3300046543 Bacteria 2449
149 Ga0495645_0088396 3300046543 Bacteria 2216
150 Ga0495645_0637137 3300046543 Unclassified 652
151 Ga0495635_0111678 3300046663 Bacteria 1867
152 Ga0495657_0198098 3300046675 Bacteria 1225
153 Ga0495623_0040082 3300046679 Bacteria 2992
154 Ga0495600_0096498 3300046809 Bacteria 1927
155 Ga0495674_0117155 3300047319 Bacteria 2253
156 Ga0495680_0697277 3300047322 Unclassified 671
157 Ga0495675_0146670 3300047444 Unclassified 1460
158 Ga0495675_0288526 3300047444 Unclassified 977
159 Ga0495684_0086547 3300047471 Bacteria 2375
160 Ga0496104_0807660 3300048907 Unclassified 844
161 nmdc:mga05p37_1307899_c1 3300050507 Bacteria 738
162 nmdc:mga09592_494448_c1 3300050508 Bacteria 1053
163 nmdc:mga0qj67_389866_c1 3300050509 Bacteria 1124
164 nmdc:mga06r32_45683_c1 3300050510 Bacteria 4176
165 nmdc:mga0n895_1407104_c1 3300050512 Unclassified 666
166 nmdc:mga08x19_10758_c1 3300050514 Bacteria 5500
167 nmdc:mga08x19_578532_c1 3300050514 Bacteria 795
168 Ga0501082_0000311 3300060353 Bacteria 43370
169 Ga0373934_0114334
170 Ga0070683_100078161
171 Ga0070680_100679364
172 Ga0070682_100180756
173 Ga0070671_100053136
174 Ga0070713_100004733
175 Ga0070713_100578911
176 Ga0070711_100067335
177 Ga0070711_100200656
178 Ga0070694_100129761
179 Ga0070708_100129146
180 Ga0070681_10151637
181 Ga0070698_100394927
182 Ga0070699_100064866
183 Ga0070684_100000002
184 Ga0070684_100083420
185 Ga0070684_100099123
186 Ga0070695_100038735
187 Ga0070696_100001970
188 Ga0070665_100113476
189 Ga0070665_100664439
190 Ga0070704_100050804
191 Ga0070704_100363387
192 Ga0068857_100539145
193 Ga0068859_100144648
194 Ga0068863_100346128
195 Ga0068863_101426988
196 Ga0068858_100878667
197 Ga0070717_10164211
198 Ga0070716_100400753
199 Ga0070716_100405302
200 Ga0068871_100331513
201 Ga0068871_101376453
202 Ga0075431_100009553
203 Ga0075433_10710063
204 Ga0075436_100002134
205 Ga0097620_100144653
206 Ga0105240_10003870
207 Ga0105240_10005171
208 Ga0105240_10037297
209 Ga0105245_10103039
210 Ga0105247_10312876
211 Ga0105247_10473221
212 Ga0114129_11690828
213 Ga0114129_11694299
214 Ga0105241_10649853
215 Ga0105242_10405062
216 Ga0105242_10620421
217 Ga0105242_11139609
218 Ga0105248_10290275
219 Ga0105248_10343115
220 Ga0105248_10616051
221 Ga0105248_11709098
222 Ga0105248_11987789
223 Ga0105237_10315947
224 Ga0105237_10747694
225 Ga0105237_10868896
226 Ga0105237_12047906
227 Ga0105238_10024845
228 Ga0105238_10264150
229 Ga0105238_10503920
230 Ga0105239_10237847
231 Ga0105239_10370061
232 Ga0157370_10481148
233 Ga0157369_10085114
234 Ga0157369_10113891
235 Ga0157374_10455548
236 Ga0157374_10708216
237 Ga0157378_11073780
238 Ga0163162_11201059
239 Ga0157375_11680626
240 Ga0163163_10062107
241 Ga0163163_10952159
242 Ga0157377_10985450
243 Ga0157376_10877160
244 Ga0163161_10410516
245 Ga0184595_116542
246 Ga0197907_10515109
247 Ga0206355_1415746
248 Ga0206352_10002734
249 Ga0154015_1653097
250 Ga0213875_10028082
251 Ga0224712_10031167
252 Ga0207707_10021404
253 Ga0207707_10133977
254 Ga0207707_10304412
255 Ga0207695_10004029
256 Ga0207695_10014070
257 Ga0207695_10039845
258 Ga0207671_10014573
259 Ga0207663_10046686
260 Ga0207694_10114234
261 Ga0207694_10261094
262 Ga0207700_10005599
263 Ga0207644_10315813
264 Ga0207665_10212083
265 Ga0207711_10193965
266 Ga0207711_10281479
267 Ga0207661_10000008
268 Ga0207661_10076445
269 Ga0207668_10521983
270 Ga0207677_10630925
271 Ga0207698_11180209
272 Ga0265338_10057621
273 Ga0265330_10168206
274 Ga0265330_10200622
275 Ga0265328_10014121
276 Ga0265320_10041477
277 Ga0265329_10039317
278 Ga0265340_10053499
279 Ga0265340_10108927
280 Ga0265339_10035968
281 Ga0265339_10305795
282 Ga0265331_10019862
283 Ga0265316_10001880
284 Ga0265316_10037791
285 Ga0265316_10049924
286 Ga0265316_10265463
287 Ga0265316_10268485
288 Ga0265314_10003050
289 Ga0265342_10098716
290 Ga0373926_0077436
291 Ga0373956_0095665
292 Ga0373943_0155456
293 Ga0373955_0831614
294 Ga0373931_0111572
295 Ga0373935_0129843
296 Ga0373935_0360527
297 Ga0373927_0002408
298 Ga0373927_0393815
299 Ga0373933_0264534
300 Ga0373947_0002256
301 Ga0373947_0162118
302 Ga0373937_0014121
303 Ga0373925_0000526
304 Ga0373925_0984220
305 Ga0436364_1082106
306 Ga0436365_0090871
307 Ga0451839_0140865
308 Ga0451576_0347972
309 Ga0466958_0145803
310 Ga0495580_0017307
311 Ga0495580_0033811
312 Ga0495580_0390805
313 Ga0495580_0392393
314 Ga0495652_0479734
315 Ga0495586_0336557
316 Ga0495645_0074237
317 Ga0495645_0088396
318 Ga0495645_0637137
319 Ga0495635_0111678
320 Ga0495657_0198098
321 Ga0495623_0040082
322 Ga0495600_0096498
323 Ga0495674_0117155
324 Ga0495680_0697277
325 Ga0495675_0146670
326 Ga0495675_0288526
327 Ga0495684_0086547
328 Ga0496104_0807660
329 nmdc:mga05p37_1307899_c1
330 nmdc:mga09592_494448_c1
331 nmdc:mga0qj67_389866_c1
332 nmdc:mga06r32_45683_c1
333 nmdc:mga0n895_1407104_c1
334 nmdc:mga08x19_10758_c1
335 nmdc:mga08x19_578532_c1
336 Ga0501082_0000311

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02620

YceD

Large ribosomal RNA subunit accumulation protein YceD

82

199

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4n59-assembly3.cif.gz_B the crystal structure of pectocin m2 at 2.3 angstroms 0.5789 12 85
2xtq-assembly8.cif.gz_H structure of the p107a colicin m mutant from e. coli 0.5321 5 85
4n58-assembly1.cif.gz_A crystal structure of pectocin m2 at 1.86 angstroms 0.5235 12 85
5u9l-assembly1.cif.gz_A crystal structure of the intermembrane space region of the plastid division protein parc6 0.5217 11 85
1qaf-assembly1.cif.gz_A the active site base controls cofactor reactivity in escherichia coli amine oxidase : x-ray crystallographic studies with mutational variants 0.4921 12 65
ID Description Score Start End Superfamily
3k8aA00 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.5379 12 85 2.40.50.140
2xmxB02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;Colicin M, catalytic domain 0.532 5 85 3.30.450.400
4n58A02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;Colicin M, catalytic domain 0.5236 12 85 3.30.450.400
1d6uA03 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5;Copper amine oxidase, catalytic domain 0.4896 12 65 2.70.98.20
4n59A02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;Colicin M, catalytic domain 0.482 12 85 3.30.450.400
ID Description Score Start End GO Terms
AF-A0A1Q8BKW4-F1-model_v4 DNA-binding protein 0.9257 1 137 GO:0003677
AF-A0A522Q3A8-F1-model_v4 DUF177 domain-containing protein 0.9033 1 172
AF-A0A522Q3A8-F1-model_v4 DUF177 domain-containing protein 0.8983 1 172
AF-A0A2V9L2C1-F1-model_v4 DNA-binding protein 0.8952 1 169 GO:0003677
AF-A0A7C6E8E4-F1-model_v4 DUF177 domain-containing protein 0.8895 1 172

Map