F251468

General Info

Members Datasets Scaffolds Average Seq Length
167 147 107 353

Family's Representative Sequence

Representative Sequence 3300053139|Ga0500568_0000086|Ga0500568_0000086_28716_29990
Length 424
Sequence MRIAFHAPLKPPDHPVPSGDRLMARLLMQAMRLAGHTVFLASRFRGYAASPQDFPARRAEGGGEVERLMAEWRAAEQPDLFFCYHTYYKAPDYLGPPLAVAFGIPYVTAEASYTRSRDAGPWAEAQAVVRHGLEQAALNLCFTERDREGLVGVVGAERLAMLPPFIDTSLFVAETLRTSSNIGDEFTPTRPFGTPSPQGGGGRQSSMASLDITVARSPSPLWGRGPEGTGGGLSQEQEKRLPGGVVPRLVTVAMMRPGDKLDSYRMLAAALALCVDLPWTLAVVGDGPCVEEVRSLFAAFEPGRIEWLGEQKPEAVPAILASGDVYVWPGFGEAFGLAYLEAQAAGLPVAAMAIAGVPEVVRDGETGLLTPPDAGAYAGAIRRLLADAGLRRSIGAAAGRFVLEERSLEKAAATLKSLLARFEP

Samples

Sample ID Description Type Environment
1 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
2 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
3 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
4 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
5 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
6 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
7 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
8 2643221568 Rhizobium sp. Root564 Isolate Unclassified
9 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
10 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
11 2643221688 Rhizobium sp. Root482 Isolate Unclassified
12 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
13 2643221718 Rhizobium sp. Root268 Isolate Unclassified
14 2643221719 Rhizobium sp. Root274 Isolate Unclassified
15 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
16 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
17 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
18 2791355256 Rhizobium sp. M10 Isolate Nodule
19 2791355260 Rhizobium sp. L9 Isolate Nodule
20 2791355261 Rhizobium sp. J15 Isolate Nodule
21 2791355262 Rhizobium sp. M1 Isolate Nodule
22 2791355265 Rhizobium sp. H4 Isolate Nodule
23 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
24 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
25 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
26 2838022645 Rhizobium aethiopicum SEMIA 4074 Isolate Nodule
27 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
28 2838668709 Rhizobium sophoriradicis SEMIA 403 Isolate Nodule
29 2838701080 Rhizobium aethiopicum SEMIA 428 Isolate Nodule
30 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
31 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
32 2842146304 Rhizobium sophoriradicis SEMIA 454 Isolate Nodule
33 2842192696 Rhizobium esperanzae SEMIA 468 Isolate Nodule
34 2842198810 Rhizobium aethiopicum SEMIA 470 Isolate Nodule
35 2842205361 Rhizobium etli SEMIA 471 Isolate Nodule
36 2842250916 Rhizobium etli SEMIA 484 Isolate Nodule
37 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
38 2842317721 Rhizobium etli SEMIA 4004 Isolate Nodule
39 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
40 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
41 2842489311 Rhizobium sophoriradicis SEMIA 4061 Isolate Nodule
42 2842495871 Rhizobium etli SEMIA 4062 Isolate Nodule
43 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
44 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
45 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
46 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
47 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
48 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
49 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
50 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
51 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
52 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
53 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
54 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
55 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
56 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
57 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
58 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
59 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
60 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
61 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
62 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
63 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
64 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
65 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
66 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
67 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
69 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
70 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
71 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
78 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
79 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
84 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
85 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
86 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
87 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
88 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
89 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
90 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
91 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
96 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
97 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
98 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
99 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
100 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
101 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
102 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
103 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
104 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
105 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
108 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
109 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
110 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
111 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
112 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
113 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
114 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
115 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
116 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
117 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
118 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
119 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
120 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
121 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
122 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
123 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
124 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
125 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
126 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
127 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
128 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
129 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
130 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
131 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
132 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
133 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
134 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
135 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
136 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
137 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
138 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
139 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
140 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
141 8005301065 Rhizobium bangladeshense 1017 Isolate Nodule
142 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
143 8005695170 Rhizobium sp. RMa-01 Isolate Unclassified
144 8024501048 Rhizobium sp. H4 Isolate Nodule
145 8054558443 Rhizobium alarense TRM95111 Isolate Nodule
146 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified
147 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 64.07
Metatranscriptomes 0
Isolates 35.93

Biome Distribution

Category Percentage (%)
Aerial Root 0.6
Bulb 0
Endosphere 21.56
Nodule 19.16
Rhizoplane 2.99
Rhizosphere 33.53
Stem 0
Stem Tuber 0
Unclassified 22.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000443 3300001979 Bacteria 17700
2 JGI25162J39368_1000656 3300002737 Bacteria 24441
3 JGI25162J39368_1002757 3300002737 Bacteria 6261
4 JGI25165J46597_1000018 3300003214 Bacteria 374701
5 JGI25165J46597_1000407 3300003214 Bacteria 45582
6 rootH2_10046923 3300003320 Bacteria 2237
7 Ga0055526_1020103 3300003771 Bacteria 2395
8 Ga0055524_1002088 3300003775 Bacteria 10558
9 Ga0055528_1001625 3300003790 Bacteria 13255
10 Ga0065165_1002002 3300005262 Bacteria 19097
11 Ga0065165_1042806 3300005262 Bacteria 1334
12 Ga0070665_100087204 3300005548 Bacteria 3126
13 Ga0068856_100005599 3300005614 Bacteria 12360
14 Ga0075365_10016887 3300006038 Bacteria 4454
15 Ga0075365_10090244 3300006038 Bacteria 2087
16 Ga0075364_10000006 3300006051 Bacteria 86571
17 Ga0075369_10001621 3300006186 Bacteria 7746
18 Ga0157370_10199493 3300013104 Bacteria 1856
19 Ga0209437_100022 3300025233 Bacteria 625694
20 Ga0209437_100040 3300025233 Bacteria 448096
21 Ga0209646_1003041 3300025246 Bacteria 3441
22 Ga0209129_1000016 3300025258 Bacteria 485491
23 Ga0209233_1000031 3300025261 Bacteria 624646
24 Ga0209233_1000051 3300025261 Bacteria 447617
25 Ga0209455_1006299 3300025272 Bacteria 3526
26 Ga0209673_1000005 3300025273 Bacteria 692788
27 Ga0209025_1001193 3300025294 Bacteria 36685
28 Ga0209025_1056269 3300025294 Bacteria 1514
29 Ga0209256_1001472 3300025299 Bacteria 24098
30 Ga0207702_10008699 3300026078 Bacteria 8562
31 Ga0268266_10004245 3300028379 Bacteria 13782
32 Ga0307515_10004549 3300028794 Bacteria 28593
33 Ga0307515_10245241 3300028794 Bacteria 1554
34 Ga0307408_100095338 3300031548 Bacteria 2255
35 Ga0307410_10013712 3300031852 Bacteria 4740
36 Ga0307406_10059309 3300031901 Bacteria 2463
37 Ga0307416_100034215 3300032002 Bacteria 3864
38 Ga0307415_100027241 3300032126 Bacteria 3619
39 Ga0439461_0019299 3300041410 Bacteria 1342
40 Ga0439466_0030945 3300041411 Bacteria 1833
41 Ga0439465_0003974 3300041413 Bacteria 4822
42 Ga0450906_001512 3300042145 Bacteria 5075
43 Ga0466966_0089260 3300044684 Bacteria 1915
44 Ga0466963_0018447 3300044694 Bacteria 4363
45 Ga0466970_0068079 3300044765 Bacteria 1912
46 Ga0466957_0018109 3300044842 Bacteria 4132
47 Ga0466958_0026590 3300045836 Bacteria 3421
48 Ga0466967_0220442 3300045976 Bacteria 1802
49 Ga0495617_007905 3300046452 Bacteria 3679
50 Ga0495629_0013548 3300046459 Bacteria 5882
51 Ga0495638_0000269 3300046460 Bacteria 70117
52 Ga0495638_0036355 3300046460 Bacteria 3138
53 Ga0495651_0057216 3300046462 Bacteria 2994
54 Ga0495605_0001352 3300046474 Bacteria 16191
55 Ga0495662_0012224 3300046476 Bacteria 4192
56 Ga0495585_0042345 3300046492 Bacteria 2551
57 Ga0495607_0045886 3300046501 Bacteria 2568
58 Ga0495606_0028654 3300046507 Bacteria 3924
59 Ga0495618_0149501 3300046514 Bacteria 1492
60 Ga0495631_0009620 3300046518 Bacteria 4820
61 Ga0495632_0011635 3300046519 Bacteria 5126
62 Ga0495609_0008986 3300046538 Bacteria 4858
63 Ga0495668_0003325 3300046616 Bacteria 12137
64 Ga0495611_0004493 3300046648 Bacteria 6027
65 Ga0495625_0155014 3300046660 Bacteria 1537
66 Ga0495657_0073016 3300046675 Bacteria 2236
67 Ga0495658_0032999 3300046683 Bacteria 2832
68 Ga0495670_0013987 3300046691 Bacteria 3948
69 Ga0495600_0023220 3300046809 Bacteria 3989
70 Ga0495636_0042972 3300047318 Bacteria 1879
71 Ga0495672_0045975 3300047320 Bacteria 2607
72 Ga0495677_0032715 3300047445 Bacteria 1894
73 Ga0495686_0000618 3300047472 Bacteria 49032
74 Ga0495686_0003574 3300047472 Bacteria 13351
75 Ga0495686_0068177 3300047472 Bacteria 2195
76 Ga0496100_0103499 3300048903 Bacteria 1966
77 Ga0496101_0206319 3300048904 Bacteria 1521
78 Ga0496116_0000380 3300048919 Bacteria 65998
79 Ga0496116_0090342 3300048919 Bacteria 1865
80 Ga0496119_0009043 3300048922 Bacteria 8636
81 Ga0496119_0133022 3300048922 Bacteria 1353
82 Ga0496121_0068422 3300048924 Bacteria 2872
83 Ga0496122_0000009 3300048925 Bacteria 584024
84 Ga0496122_0056719 3300048925 Bacteria 2917
85 Ga0496122_0077553 3300048925 Bacteria 2332
86 Ga0496123_0000020 3300048926 Bacteria 388748
87 Ga0496123_0062547 3300048926 Bacteria 2384
88 Ga0496124_0027213 3300048927 Bacteria 5139
89 Ga0496124_0112814 3300048927 Bacteria 2185
90 Ga0496124_0125811 3300048927 Bacteria 2042
91 Ga0496126_0000293 3300048929 Bacteria 106340
92 Ga0496126_0032198 3300048929 Bacteria 4942
93 Ga0501075_0099355 3300049591 Bacteria 2210
94 nmdc:mga00v17_139_c1 3300050491 Bacteria 42380
95 nmdc:mga0yw44_69240_c1 3300050492 Bacteria 2185
96 Ga0495619_0079844 3300053085 Bacteria 2201
97 Ga0500557_001254 3300053105 Bacteria 4008
98 Ga0500569_045935 3300053109 Bacteria 1299
99 Ga0500572_016069 3300053111 Bacteria 1899
100 Ga0500594_0002783 3300053118 Bacteria 3808
101 Ga0500568_0000086 3300053139 Bacteria 90828
102 Ga0500568_0003372 3300053139 Bacteria 8928
103 Ga0500590_000698 3300053148 Bacteria 12170
104 Ga0500616_0004345 3300053153 Bacteria 10141
105 Ga0500627_0052132 3300053158 Bacteria 1785
106 Ga0500636_0016813 3300053177 Bacteria 4313
107 Ga0500645_015148 3300053730 Bacteria 2447

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0000009 Ga0496122_0000009_245630_246721 307
2 3300048926 Ga0496123_0000020 Ga0496123_0000020_50082_51173 307
3 3300048927 Ga0496124_0112814 Ga0496124_0112814_41_1132 307
4 3300045976 Ga0466967_0220442 Ga0466967_0220442_789_1787 312
5 3300053109 Ga0500569_045935 Ga0500569_045935_260_1273 316
6 iso_pu_bacteria 2643221688 2644494113 317
7 3300041410 Ga0439461_0019299 Ga0439461_0019299_47_1075 321
8 3300048922 Ga0496119_0133022 Ga0496119_0133022_124_1155 321
9 3300048929 Ga0496126_0000293 Ga0496126_0000293_30982_32013 321
10 3300046507 Ga0495606_0028654 Ga0495606_0028654_518_1555 323
11 3300048903 Ga0496100_0103499 Ga0496100_0103499_269_1306 323
12 3300048904 Ga0496101_0206319 Ga0496101_0206319_49_1086 323
13 3300046452 Ga0495617_007905 Ga0495617_007905_1956_3020 331
14 3300046474 Ga0495605_0001352 Ga0495605_0001352_11379_12443 331
15 3300046492 Ga0495585_0042345 Ga0495585_0042345_918_1982 331
16 3300046501 Ga0495607_0045886 Ga0495607_0045886_1279_2343 331
17 3300046518 Ga0495631_0009620 Ga0495631_0009620_570_1634 331
18 3300046519 Ga0495632_0011635 Ga0495632_0011635_1826_2890 331
19 3300046616 Ga0495668_0003325 Ga0495668_0003325_7535_8599 331
20 3300046691 Ga0495670_0013987 Ga0495670_0013987_1208_2272 331
21 3300047445 Ga0495677_0032715 Ga0495677_0032715_388_1452 331
22 3300053105 Ga0500557_001254 Ga0500557_001254_1480_2544 331
23 3300046460 Ga0495638_0036355 Ga0495638_0036355_1598_2692 332
24 iso_pu_bacteria 2791355260 2793321554 335
25 3300003320 rootH2_10046923 rootH2_100469232 336
26 iso_pu_bacteria 2643221637 2644208581 336
27 iso_pu_bacteria 2643221718 2644652111 336
28 3300003771 Ga0055526_1020103 Ga0055526_10201032 337
29 3300003775 Ga0055524_1002088 Ga0055524_10020888 337
30 3300003790 Ga0055528_1001625 Ga0055528_100162512 337
31 3300005262 Ga0065165_1042806 Ga0065165_10428061 337
32 3300025258 Ga0209129_1000016 Ga0209129_1000016213 337
33 3300025273 Ga0209673_1000005 Ga0209673_1000005343 337
34 3300025294 Ga0209025_1001193 Ga0209025_100119315 337
35 3300025294 Ga0209025_1056269 Ga0209025_10562692 337
36 3300025299 Ga0209256_1001472 Ga0209256_100147222 337
37 3300053139 Ga0500568_0000086 Ga0500568_0000086_28716_29990 337
38 iso_pu_bacteria 2791355261 2793325931 337
39 iso_pu_bacteria 2838022645 2838024883 337
40 iso_pu_bacteria 2842198810 2842201968 337
41 iso_pu_bacteria 8055431914 8055431919 337
42 3300013104 Ga0157370_10199493 Ga0157370_101994932 338
43 iso_pu_bacteria 2643221653 2644298255 338
44 iso_pu_bacteria 2643221719 2644656507 338
45 iso_pu_bacteria 2791355253 2793283403 338
46 iso_pu_bacteria 2791355256 2793296555 338
47 iso_pu_bacteria 2791355262 2793332941 338
48 iso_pu_bacteria 2791355265 2793355255 338
49 iso_pu_bacteria 2802429605 2805927935 338
50 iso_pu_bacteria 2802429606 2805933781 338
51 iso_pu_bacteria 2818991461 2819684420 338
52 iso_pu_bacteria 2838668709 2838674672 338
53 iso_pu_bacteria 2838701080 2838705227 338
54 iso_pu_bacteria 2842146304 2842150282 338
55 iso_pu_bacteria 2842192696 2842195103 338
56 iso_pu_bacteria 2842205361 2842210480 338
57 iso_pu_bacteria 2842250916 2842254968 338
58 iso_pu_bacteria 2842278818 2842283934 338
59 iso_pu_bacteria 2842317721 2842319287 338
60 iso_pu_bacteria 2842489311 2842491734 338
61 iso_pu_bacteria 2842495871 2842502047 338
62 iso_pu_bacteria 2899803654 2899808715 338
63 iso_pu_bacteria 8005289223 8005290523 338
64 iso_pu_bacteria 8024501048 8024505409 338
65 iso_pu_bacteria 8056382006 8056383161 338
66 3300046460 Ga0495638_0000269 Ga0495638_0000269_66781_67875 339
67 3300046538 Ga0495609_0008986 Ga0495609_0008986_230_1318 339
68 3300046648 Ga0495611_0004493 Ga0495611_0004493_4361_5449 339
69 3300047318 Ga0495636_0042972 Ga0495636_0042972_186_1280 339
70 3300047320 Ga0495672_0045975 Ga0495672_0045975_328_1422 339
71 3300048919 Ga0496116_0090342 Ga0496116_0090342_695_1780 339
72 3300053118 Ga0500594_0002783 Ga0500594_0002783_2498_3592 339
73 3300053139 Ga0500568_0003372 Ga0500568_0003372_5175_6269 339
74 3300053153 Ga0500616_0004345 Ga0500616_0004345_2243_3337 339
75 3300053730 Ga0500645_015148 Ga0500645_015148_1258_2352 339
76 iso_pu_bacteria 2510461069 2510842098 339
77 iso_pu_bacteria 2513237159 2513997443 339
78 iso_pu_bacteria 2582581306 2585265960 339
79 iso_pu_bacteria 2582581865 2585390151 339
80 iso_pu_bacteria 2582581866 2585395306 339
81 iso_pu_bacteria 2600254933 2600374961 339
82 iso_pu_bacteria 2643221689 2644500508 339
83 iso_pu_bacteria 2842395702 2842396756 339
84 iso_pu_bacteria 2842521101 2842522316 339
85 iso_pu_bacteria 2919166419 2919170691 339
86 iso_pu_bacteria 2978969890 2978972497 339
87 iso_pu_bacteria 2984587000 2984590751 339
88 iso_pu_bacteria 2989771324 2989771886 339
89 iso_pu_bacteria 8005658619 8005661635 339
90 iso_pu_bacteria 8005695170 8005696940 339
91 iso_pu_bacteria 8054558443 8054560694 339
92 iso_pu_bacteria 2558860983 2561467955 340
93 iso_pu_bacteria 2989349275 2989353757 340
94 3300006051 Ga0075364_10000006 Ga0075364_100000062 341
95 3300048924 Ga0496121_0068422 Ga0496121_0068422_927_2048 341
96 3300048925 Ga0496122_0056719 Ga0496122_0056719_143_1264 341
97 3300048926 Ga0496123_0062547 Ga0496123_0062547_936_2057 341
98 3300048927 Ga0496124_0125811 Ga0496124_0125811_368_1489 341
99 3300048929 Ga0496126_0032198 Ga0496126_0032198_143_1264 341
100 3300050491 nmdc:mga00v17_139_c1 nmdc:mga00v17_139_c1_11720_12844 341
101 iso_pu_bacteria 2775507049 2776910386 341
102 iso_pu_bacteria 8005301065 8005305180 341
103 3300005262 Ga0065165_1002002 Ga0065165_100200217 342
104 iso_pu_bacteria 2667528174 2671112959 342
105 iso_pu_bacteria 2838029111 2838033802 342
106 iso_pu_bacteria 2842475841 2842480549 342
107 iso_pu_bacteria 2842502639 2842507170 342
108 iso_pu_bacteria 2919408235 2919412748 342
109 iso_pu_bacteria 2989776772 2989776787 342
110 3300006038 Ga0075365_10090244 Ga0075365_100902442 343
111 3300006186 Ga0075369_10001621 Ga0075369_100016216 343
112 3300028794 Ga0307515_10004549 Ga0307515_100045496 343
113 3300031548 Ga0307408_100095338 Ga0307408_1000953382 343
114 3300031901 Ga0307406_10059309 Ga0307406_100593092 343
115 3300041411 Ga0439466_0030945 Ga0439466_0030945_131_1225 343
116 3300041413 Ga0439465_0003974 Ga0439465_0003974_2851_3999 343
117 3300042145 Ga0450906_001512 Ga0450906_001512_2895_4058 343
118 3300046459 Ga0495629_0013548 Ga0495629_0013548_3932_5026 343
119 3300046462 Ga0495651_0057216 Ga0495651_0057216_509_1603 343
120 3300046476 Ga0495662_0012224 Ga0495662_0012224_2412_3506 343
121 3300046514 Ga0495618_0149501 Ga0495618_0149501_299_1393 343
122 3300046660 Ga0495625_0155014 Ga0495625_0155014_433_1527 343
123 3300046675 Ga0495657_0073016 Ga0495657_0073016_280_1374 343
124 3300046683 Ga0495658_0032999 Ga0495658_0032999_1473_2567 343
125 3300046809 Ga0495600_0023220 Ga0495600_0023220_528_1622 343
126 3300048919 Ga0496116_0000380 Ga0496116_0000380_43076_44173 343
127 3300048925 Ga0496122_0077553 Ga0496122_0077553_1038_2135 343
128 3300050492 nmdc:mga0yw44_69240_c1 nmdc:mga0yw44_69240_c1_943_2037 343
129 3300053085 Ga0495619_0079844 Ga0495619_0079844_1094_2188 343
130 3300053111 Ga0500572_016069 Ga0500572_016069_618_1715 343
131 3300053148 Ga0500590_000698 Ga0500590_000698_4422_5516 343
132 3300053177 Ga0500636_0016813 Ga0500636_0016813_2080_3177 343
133 iso_pu_bacteria 2643221568 2643854974 343
134 iso_pu_bacteria 2841846520 2841850647 343
135 iso_pu_bacteria 2842124991 2842128843 343
136 3300002737 JGI25162J39368_1002757 JGI25162J39368_10027573 344
137 3300003214 JGI25165J46597_1000407 JGI25165J46597_100040724 344
138 3300025233 Ga0209437_100040 Ga0209437_100040335 344
139 3300025261 Ga0209233_1000051 Ga0209233_1000051336 344
140 3300031852 Ga0307410_10013712 Ga0307410_100137125 344
141 3300032002 Ga0307416_100034215 Ga0307416_1000342152 344
142 3300032126 Ga0307415_100027241 Ga0307415_1000272413 344
143 3300044684 Ga0466966_0089260 Ga0466966_0089260_273_1367 344
144 3300044694 Ga0466963_0018447 Ga0466963_0018447_1535_2629 344
145 3300044842 Ga0466957_0018109 Ga0466957_0018109_2559_3653 344
146 3300045836 Ga0466958_0026590 Ga0466958_0026590_2256_3350 344
147 3300053158 Ga0500627_0052132 Ga0500627_0052132_133_1302 344
148 3300005548 Ga0070665_100087204 Ga0070665_1000872042 345
149 3300006038 Ga0075365_10016887 Ga0075365_100168873 345
150 3300028379 Ga0268266_10004245 Ga0268266_1000424510 345
151 3300028794 Ga0307515_10245241 Ga0307515_102452412 345
152 3300044765 Ga0466970_0068079 Ga0466970_0068079_777_1874 345
153 3300047472 Ga0495686_0000618 Ga0495686_0000618_20443_21543 345
154 3300047472 Ga0495686_0003574 Ga0495686_0003574_4898_5998 345
155 3300047472 Ga0495686_0068177 Ga0495686_0068177_1058_2158 345
156 3300001979 JGI24740J21852_10000443 JGI24740J21852_100004434 346
157 3300002737 JGI25162J39368_1000656 JGI25162J39368_100065620 346
158 3300003214 JGI25165J46597_1000018 JGI25165J46597_1000018263 346
159 3300005614 Ga0068856_100005599 Ga0068856_1000055993 346
160 3300025233 Ga0209437_100022 Ga0209437_100022324 346
161 3300025246 Ga0209646_1003041 Ga0209646_10030412 346
162 3300025261 Ga0209233_1000031 Ga0209233_1000031324 346
163 3300025272 Ga0209455_1006299 Ga0209455_10062992 346
164 3300026078 Ga0207702_10008699 Ga0207702_100086997 346
165 3300048922 Ga0496119_0009043 Ga0496119_0009043_709_1806 346
166 3300048927 Ga0496124_0027213 Ga0496124_0027213_2263_3360 346
167 3300049591 Ga0501075_0099355 Ga0501075_0099355_875_2035 346

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00534

Glycos_transf_1

Glycosyl transferases group 1

261

401

0.93

PF13692

Glyco_trans_1_4

Glycosyl transferases group 1

246

387

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
5i45-assembly1.cif.gz_A 1.35 angstrom crystal structure of c-terminal domain of glycosyl transferase group 1 family protein (lpcc) from francisella tularensis. 0.7984 168 323
7vfm-assembly2.cif.gz_C crystal structure of sdgb (udp and sd peptide-binding form) 0.7308 66 339
7ec1-assembly1.cif.gz_B crystal structure of sdgb (ligand-free form) 0.7305 66 339
3c4q-assembly1.cif.gz_A structure of the retaining glycosyltransferase msha : the first step in mycothiol biosynthesis. organism : corynebacterium glutamicum- complex with udp 0.7229 1 341
7vfn-assembly2.cif.gz_C crystal structure of sdgb (sd peptide-binding form) 0.7164 65 339
ID Description Score Start End Superfamily
af_P9WMZ3_200_365_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8599 184 319 3.40.50.2000
af_P9WMY9_212_374_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8491 180 314 3.40.50.2000
af_Q84QB1_230_385_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.846 182 319 3.40.50.2000
3okaA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8306 179 319 3.40.50.2000
af_Q4D163_355_523_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8291 180 316 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A3C0FHP3-F1-model_v4 Glycosyl transferase 0.9488 1 163 GO:0016740
AF-A0A4P9VLP7-F1-model_v4 Glycosyltransferase family 1 protein 0.9486 2 168
AF-A0A7C1Y1R3-F1-model_v4 Glycosyltransferase family 1 protein 0.9468 1 171
AF-A0A7G2LU73-F1-model_v4 Glycosyl transferase family 1 0.9308 1 168 GO:0016740
AF-A0A3C0FHP3-F1-model_v4 Glycosyl transferase 0.9268 1 163 GO:0016740

Feature Viewer

pLDDT pTM Quality
92.56 0.89 High
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Predicted Structure (AlphaFold2)

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