F251328

General Info

Members Datasets Scaffolds Average Seq Length
167 140 334 303

Family's Representative Sequence

Representative Sequence 3300049572|Ga0501036_0000755|Ga0501036_0000755_20032_21129
Length 365
Sequence MPGTIGAGIDLRVPHFHHAPCSCYYTKEREWISSRWGRHHGPVRANSRARDTAACGHNGQVTSTAVPDLAALGPRLPSPVQEVADDRFARRGLRLLLKRDDLIHPELSGNKWRKLVPNLRAAAGRRIVTFGGAYSNHLRATAAAGRLLGVETIGVVRGQELADRPLNPSLARCAADGMRLHFVDRSTYRRKAEPDTLAAVLRAVGAEDAHVVPEGGSNALAVHGCRSLGAELGDRADVVAVACGTGGTLAGLAAGLPEGRRALGISVLKGGFLAAATQALQEQAFGARRGTWSLDDRFHCGGYARTIPELDAFAEDFAERHGVPVERLYVAKLLYALVALADEGAFPRGTTIAAVVTGRPFPEHT

Samples

Sample ID Description Type Environment
1 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
4 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
5 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
6 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
7 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
8 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
9 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
10 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
11 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
13 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
14 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
15 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
16 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
17 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
18 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
19 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
20 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
21 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
22 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
23 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
24 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
25 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
26 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
27 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
28 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
29 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
30 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
31 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
32 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
33 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
34 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
35 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
36 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
37 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
38 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
39 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
40 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
41 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
42 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
43 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
44 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
45 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
46 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
47 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
48 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
49 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
50 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
51 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
52 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
53 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
54 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
55 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
56 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
57 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
58 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
59 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
60 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
61 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
62 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
63 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
64 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
65 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
66 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
67 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
68 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
69 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
70 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
71 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
72 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
73 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
74 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
75 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
76 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
77 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
78 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
79 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
80 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
81 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
82 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
83 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
84 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
85 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
88 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
89 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
90 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
91 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
92 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
93 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
94 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
95 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
103 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
104 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
105 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
106 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
107 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
108 2643221578 Streptomyces sp. Root63 Isolate Unclassified
109 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
110 2643221714 Streptomyces sp. Root264 Isolate Unclassified
111 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
112 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
113 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
114 2808606448 Streptomyces sp. 193411 Isolate Unclassified
115 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
116 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
117 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
118 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
119 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
120 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
121 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
122 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
123 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
124 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
125 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
126 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
127 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
128 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
129 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
130 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
131 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
132 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
133 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
134 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
135 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
136 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
137 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
138 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
139 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
140 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.84
Metatranscriptomes 0
Isolates 22.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.8
Nodule 0.6
Rhizoplane 0
Rhizosphere 83.23
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501036_0000755 3300049572 Bacteria 23964
2 rootH2_10003593 3300003320 Bacteria 1724
3 Ga0068853_100050474 3300005539 Bacteria 3579
4 Ga0075363_100001521 3300006048 Bacteria 8874
5 Ga0157369_10182672 3300013105 Bacteria 2206
6 Ga0182005_1007671 3300015265 Bacteria 3223
7 Ga0209758_1011882 3300025297 Bacteria 4962
8 Ga0207647_10150287 3300025904 Bacteria 1361
9 Ga0207709_10060104 3300025935 Bacteria 2368
10 Ga0207639_10024684 3300026041 Bacteria 4354
11 Ga0268266_10196393 3300028379 Bacteria 1845
12 Ga0307515_10080727 3300028794 Bacteria 4236
13 Ga0268256_1004716 3300030500 Bacteria 5555
14 Ga0307511_10069918 3300030521 Bacteria 2575
15 Ga0307512_10013871 3300030522 Bacteria 7529
16 Ga0307512_10040914 3300030522 Bacteria 3858
17 Ga0307508_10021395 3300031616 Bacteria 5880
18 Ga0307514_10010468 3300031649 Bacteria 7746
19 Ga0307518_10027049 3300031838 Bacteria 4137
20 Ga0307518_10073150 3300031838 Bacteria 2481
21 Ga0307510_10006521 3300033180 Bacteria 13915
22 Ga0395898_0003329 3300037466 Bacteria 18046
23 Ga0395898_0092429 3300037466 Bacteria 2910
24 Ga0395901_0211591 3300038443 Bacteria 2029
25 Ga0439436_0005482 3300041404 Bacteria 3885
26 Ga0439439_0002700 3300041406 Bacteria 3808
27 Ga0439449_0000611 3300042007 Bacteria 13394
28 Ga0439457_000032 3300042014 Bacteria 28723
29 Ga0450894_000321 3300042131 Bacteria 8554
30 Ga0450896_000789 3300042133 Bacteria 3567
31 Ga0450898_004460 3300042134 Bacteria 2072
32 Ga0450906_003782 3300042145 Bacteria 3219
33 Ga0466969_0031082 3300044656 Bacteria 2719
34 Ga0466972_0012557 3300044658 Bacteria 4255
35 Ga0466965_0000317 3300044683 Bacteria 16215
36 Ga0466965_0063107 3300044683 Bacteria 1854
37 Ga0466966_0000888 3300044684 Bacteria 19088
38 Ga0466961_0106265 3300044693 Bacteria 1767
39 Ga0466963_0020488 3300044694 Bacteria 4158
40 Ga0466963_0038073 3300044694 Bacteria 3144
41 Ga0466964_0022242 3300044706 Bacteria 2458
42 Ga0466971_0014072 3300044719 Bacteria 3517
43 Ga0466970_0000657 3300044765 Bacteria 16987
44 Ga0466970_0002519 3300044765 Bacteria 8835
45 Ga0466957_0008337 3300044842 Bacteria 5892
46 Ga0466960_0001986 3300044901 Bacteria 7581
47 Ga0466959_0118863 3300045049 Bacteria 1880
48 Ga0466967_0001833 3300045976 Bacteria 12779
49 Ga0466967_0007943 3300045976 Bacteria 7718
50 Ga0466967_0113626 3300045976 Bacteria 2492
51 Ga0495617_024681 3300046452 Bacteria 2028
52 Ga0495592_0032852 3300046454 Bacteria 3914
53 Ga0495603_0007932 3300046455 Bacteria 6406
54 Ga0495590_0035755 3300046457 Bacteria 1734
55 Ga0495629_0251470 3300046459 Bacteria 1216
56 Ga0495638_0065228 3300046460 Bacteria 2242
57 Ga0495651_0007337 3300046462 Bacteria 8429
58 Ga0495651_0026051 3300046462 Bacteria 4553
59 Ga0495580_0006070 3300046472 Bacteria 9888
60 Ga0495605_0026186 3300046474 Bacteria 3032
61 Ga0495662_0001120 3300046476 Bacteria 13192
62 Ga0495664_0000880 3300046477 Bacteria 15470
63 Ga0495664_0112986 3300046477 Bacteria 1640
64 Ga0495584_0071627 3300046491 Bacteria 1742
65 Ga0495585_0178857 3300046492 Bacteria 1091
66 Ga0495594_0155044 3300046499 Bacteria 1300
67 Ga0495607_0012776 3300046501 Bacteria 5526
68 Ga0495606_0006150 3300046507 Bacteria 11180
69 Ga0495608_0004466 3300046511 Bacteria 9999
70 Ga0495616_0011084 3300046513 Bacteria 5180
71 Ga0495620_0014786 3300046515 Bacteria 3956
72 Ga0495620_0036051 3300046515 Bacteria 2216
73 Ga0495628_0160702 3300046516 Bacteria 1707
74 Ga0495630_0088437 3300046517 Bacteria 2339
75 Ga0495648_0025443 3300046524 Bacteria 4007
76 Ga0495648_0044873 3300046524 Bacteria 2755
77 Ga0495666_0000897 3300046526 Bacteria 13958
78 Ga0495666_0080582 3300046526 Bacteria 1540
79 Ga0495642_0050695 3300046528 Bacteria 1707
80 Ga0495652_0044429 3300046529 Bacteria 3825
81 Ga0495652_0094194 3300046529 Bacteria 2443
82 Ga0495665_0018223 3300046531 Bacteria 3773
83 Ga0495640_0006313 3300046533 Bacteria 9392
84 Ga0495609_0008046 3300046538 Bacteria 5197
85 Ga0495597_0005725 3300046542 Bacteria 6529
86 Ga0495645_0003091 3300046543 Bacteria 11272
87 Ga0495633_0050859 3300046558 Bacteria 1953
88 Ga0495667_0000787 3300046559 Bacteria 20365
89 Ga0495668_0177861 3300046616 Bacteria 1165
90 Ga0495611_0075593 3300046648 Bacteria 1543
91 Ga0495657_0013026 3300046675 Bacteria 6151
92 Ga0495657_0035854 3300046675 Bacteria 3434
93 Ga0495657_0046696 3300046675 Bacteria 2930
94 Ga0495623_0028444 3300046679 Bacteria 3595
95 Ga0495646_0010766 3300046680 Bacteria 5810
96 Ga0495613_0001477 3300046689 Bacteria 17919
97 Ga0495613_0056997 3300046689 Bacteria 2868
98 Ga0495613_0102200 3300046689 Bacteria 2069
99 Ga0495613_0105908 3300046689 Bacteria 2029
100 Ga0495613_0174030 3300046689 Bacteria 1526
101 Ga0495649_0020654 3300046694 Bacteria 3691
102 Ga0495589_0033791 3300046794 Bacteria 2567
103 Ga0495600_0084978 3300046809 Bacteria 2065
104 Ga0495581_0036488 3300047315 Bacteria 2844
105 Ga0495604_0009994 3300047317 Bacteria 7512
106 Ga0495674_0112759 3300047319 Bacteria 2303
107 Ga0495676_0280902 3300047321 Bacteria 1127
108 Ga0495687_003433 3300047443 Bacteria 11495
109 Ga0495675_0074099 3300047444 Bacteria 2145
110 Ga0495677_0028993 3300047445 Bacteria 2012
111 Ga0495685_011150 3300047447 Bacteria 3027
112 Ga0495685_030392 3300047447 Bacteria 1857
113 Ga0495685_031764 3300047447 Bacteria 1814
114 Ga0495681_0055697 3300047470 Bacteria 1843
115 Ga0495684_0122821 3300047471 Bacteria 1955
116 Ga0495593_0041379 3300047673 Bacteria 2477
117 Ga0495593_0069171 3300047673 Bacteria 1836
118 Ga0495602_0046938 3300048088 Bacteria 3896
119 Ga0501033_0152287 3300049570 Bacteria 1668
120 Ga0501037_0213298 3300049573 Bacteria 1361
121 Ga0501038_0000885 3300049574 Bacteria 26550
122 Ga0501043_0028367 3300049579 Bacteria 4394
123 Ga0501035_0116339 3300049822 Bacteria 2340
124 Ga0501035_0157199 3300049822 Bacteria 1970
125 Ga0501044_0001986 3300049823 Bacteria 23638
126 Ga0501044_0016860 3300049823 Bacteria 7837
127 Ga0501044_0053633 3300049823 Bacteria 4147
128 Ga0501044_0152985 3300049823 Bacteria 2288
129 Ga0495619_0090069 3300053085 Bacteria 2076
130 Ga0500573_0138719 3300053140 Bacteria 1341
131 2547408499 2547132111 Bacteria 8013147
132 2554256332 2554235005 Bacteria 6457341
133 2585318595 2582581314 Bacteria 11452267
134 2616697180 2616644814 Bacteria 11555299
135 2643902380 2643221578 Bacteria 9213798
136 2644439908 2643221678 Bacteria 9540101
137 2644632761 2643221714 Bacteria 9015452
138 2785341321 2784746763 Bacteria 9783172
139 2808843915 2808606359 Bacteria 9866990
140 2808913472 2808606375 Bacteria 9466072
141 2809233967 2808606448 Bacteria 8656184
142 2812356109 2811994879 Bacteria 9313447
143 2852640889 2852635781 Bacteria 8251373
144 2862179073 2862178590 Bacteria 8583590
145 2862284879 2862281513 Bacteria 9621493
146 2862513356 2862507626 Bacteria 9425308
147 2863408488 2863404153 Bacteria 9672205
148 2873154166 2873151551 Bacteria 8625867
149 2875396577 2875391855 Bacteria 7600475
150 2877679238 2877676314 Bacteria 9512378
151 2912717838 2912715099 Bacteria 9460473
152 2912730274 2912723979 Bacteria 8557534
153 2935394559 2935390628 Bacteria 7043367
154 2946069740 2946064051 Bacteria 8957905
155 2946077624 2946072368 Bacteria 8999607
156 2947227057 2947224130 Bacteria 9938529
157 2954724387 2954721474 Bacteria 10456478
158 2954737431 2954731030 Bacteria 10243860
159 2954743309 2954740390 Bacteria 10229294
160 2990064021 2990059506 Bacteria 9321252
161 3006498138 3006493962 Bacteria 8825450
162 8008562659 8008558824 Bacteria 10610750
163 8008577282 8008574985 Bacteria 7815457
164 8023627922 8023623736 Bacteria 8593882
165 8048406582 8048406513 Bacteria 8936924
166 8056447722 8056447290 Bacteria 7680491
167 8056832028 8056829672 Bacteria 9045328
168 Ga0501036_0000755
169 rootH2_10003593
170 Ga0068853_100050474
171 Ga0075363_100001521
172 Ga0157369_10182672
173 Ga0182005_1007671
174 Ga0209758_1011882
175 Ga0207647_10150287
176 Ga0207709_10060104
177 Ga0207639_10024684
178 Ga0268266_10196393
179 Ga0307515_10080727
180 Ga0268256_1004716
181 Ga0307511_10069918
182 Ga0307512_10013871
183 Ga0307512_10040914
184 Ga0307508_10021395
185 Ga0307514_10010468
186 Ga0307518_10027049
187 Ga0307518_10073150
188 Ga0307510_10006521
189 Ga0395898_0003329
190 Ga0395898_0092429
191 Ga0395901_0211591
192 Ga0439436_0005482
193 Ga0439439_0002700
194 Ga0439449_0000611
195 Ga0439457_000032
196 Ga0450894_000321
197 Ga0450896_000789
198 Ga0450898_004460
199 Ga0450906_003782
200 Ga0466969_0031082
201 Ga0466972_0012557
202 Ga0466965_0000317
203 Ga0466965_0063107
204 Ga0466966_0000888
205 Ga0466961_0106265
206 Ga0466963_0020488
207 Ga0466963_0038073
208 Ga0466964_0022242
209 Ga0466971_0014072
210 Ga0466970_0000657
211 Ga0466970_0002519
212 Ga0466957_0008337
213 Ga0466960_0001986
214 Ga0466959_0118863
215 Ga0466967_0001833
216 Ga0466967_0007943
217 Ga0466967_0113626
218 Ga0495617_024681
219 Ga0495592_0032852
220 Ga0495603_0007932
221 Ga0495590_0035755
222 Ga0495629_0251470
223 Ga0495638_0065228
224 Ga0495651_0007337
225 Ga0495651_0026051
226 Ga0495580_0006070
227 Ga0495605_0026186
228 Ga0495662_0001120
229 Ga0495664_0000880
230 Ga0495664_0112986
231 Ga0495584_0071627
232 Ga0495585_0178857
233 Ga0495594_0155044
234 Ga0495607_0012776
235 Ga0495606_0006150
236 Ga0495608_0004466
237 Ga0495616_0011084
238 Ga0495620_0014786
239 Ga0495620_0036051
240 Ga0495628_0160702
241 Ga0495630_0088437
242 Ga0495648_0025443
243 Ga0495648_0044873
244 Ga0495666_0000897
245 Ga0495666_0080582
246 Ga0495642_0050695
247 Ga0495652_0044429
248 Ga0495652_0094194
249 Ga0495665_0018223
250 Ga0495640_0006313
251 Ga0495609_0008046
252 Ga0495597_0005725
253 Ga0495645_0003091
254 Ga0495633_0050859
255 Ga0495667_0000787
256 Ga0495668_0177861
257 Ga0495611_0075593
258 Ga0495657_0013026
259 Ga0495657_0035854
260 Ga0495657_0046696
261 Ga0495623_0028444
262 Ga0495646_0010766
263 Ga0495613_0001477
264 Ga0495613_0056997
265 Ga0495613_0102200
266 Ga0495613_0105908
267 Ga0495613_0174030
268 Ga0495649_0020654
269 Ga0495589_0033791
270 Ga0495600_0084978
271 Ga0495581_0036488
272 Ga0495604_0009994
273 Ga0495674_0112759
274 Ga0495676_0280902
275 Ga0495687_003433
276 Ga0495675_0074099
277 Ga0495677_0028993
278 Ga0495685_011150
279 Ga0495685_030392
280 Ga0495685_031764
281 Ga0495681_0055697
282 Ga0495684_0122821
283 Ga0495593_0041379
284 Ga0495593_0069171
285 Ga0495602_0046938
286 Ga0501033_0152287
287 Ga0501037_0213298
288 Ga0501038_0000885
289 Ga0501043_0028367
290 Ga0501035_0116339
291 Ga0501035_0157199
292 Ga0501044_0001986
293 Ga0501044_0016860
294 Ga0501044_0053633
295 Ga0501044_0152985
296 Ga0495619_0090069
297 Ga0500573_0138719
298 2547408499
299 2554256332
300 2585318595
301 2616697180
302 2643902380
303 2644439908
304 2644632761
305 2785341321
306 2808843915
307 2808913472
308 2809233967
309 2812356109
310 2852640889
311 2862179073
312 2862284879
313 2862513356
314 2863408488
315 2873154166
316 2875396577
317 2877679238
318 2912717838
319 2912730274
320 2935394559
321 2946069740
322 2946077624
323 2947227057
324 2954724387
325 2954737431
326 2954743309
327 2990064021
328 3006498138
329 8008562659
330 8008577282
331 8023627922
332 8048406582
333 8056447722
334 8056832028

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

75

358

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4d92-assembly1.cif.gz_B salmonella typhimurium d-cysteine desulfhydrase soaked with beta-chloro-d-alanine shows pyruvate bound 4 a away from active site 0.8601 10 293
4d9f-assembly2.cif.gz_C d-cysteine desulfhydrase from salmonella typhimurium complexed with d-cycloserine (dcs) 0.8552 10 293
4d8w-assembly1.cif.gz_B salmonella typhimurium d-cysteine desulfhydrase soaked with d-cys shows pyruvate bound 4 a away from active site 0.8513 10 293
4d97-assembly1.cif.gz_B salmonella typhimurium d-cysteine desulfhydrase with d-ser bound at active site 0.8457 10 293
4d8t-assembly1.cif.gz_B crystal structure of d-cysteine desulfhydrase from salmonella typhimurium at 2.2 a resolution 0.8453 10 293
ID Description Score Start End Superfamily
af_A0A1D6JVQ2_3_135_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7754 192 294 3.40.50.1100
af_A0A1D6NEQ8_83_185_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.775 46 138 3.40.50.1100
af_B9EYZ1_202_400_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7577 147 293 3.40.50.1100
5ybwB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7352 46 121 3.40.50.1100
4d8uD02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7307 47 148 3.40.50.1100
ID Description Score Start End GO Terms
AF-A0A250VAQ9-F1-model_v4 1-aminocyclopropane-1-carboxylate deaminase 0.9934 7 296 GO:0019148
AF-A0A7K3C3B1-F1-model_v4 deleted 0.9934 8 297
AF-A0A1G6WEE2-F1-model_v4 1-aminocyclopropane-1-carboxylate deaminase 0.9922 2 297 GO:0019148
AF-A0A385ZND7-F1-model_v4 deleted 0.9918 1 297
AF-A0A0N0N5Y7-F1-model_v4 Pyridoxal-5'-phosphate-dependent protein beta subunit 0.9902 7 296 GO:0019148

Map