F251294
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 167 | 76 | 330 | 312 |
Family's Representative Sequence
| Representative Sequence | 3300048927|Ga0496124_0002013|Ga0496124_0002013_22481_23554 |
| Length | 357 |
| Sequence | MRVSTKSLPRSKSNWMPGLPHNNANAIQPVQAQKEPVGWRSQQVLFSPGKVVDYVAKNRWKRFAPLLLLMLPGLLYLLINNYLPMFGMIIAFKDINFAKGIFGSDWIGFKNFEYLFKTSDAFIITRNTLLYNGAFIIVNTLGAITIAILLNEIRAKLYQRFYQSVVILPHLISMVIVSYLVFAMLSSDSGLLNKSILPLLGLEEISWYSSKEYWPYILTTVNIWKGIGFLSVIYLASIISIDPEYYEAATLDGASKWQQIRKITVPLIMPVITIMTLLAIGRIFYSDFGLFYQVPMDSGILSDTTSVIDTYVYRALMNLGDIGMSSAAGVYQSIVGFVLVILSNYTVRKFNKENALF |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 2 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 3 | 3300003841 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 4 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 5 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 6 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 7 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 8 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 9 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 10 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 11 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 12 | 3300042007 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 | Metagenome | Rhizosphere |
| 13 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 14 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 15 | 3300046520 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere | Metagenome | Rhizosphere |
| 16 | 3300046810 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere | Metagenome | Rhizosphere |
| 17 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 18 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 19 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 20 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 21 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 22 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 23 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 24 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 25 | 3300049528 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 26 | 3300049652 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought | Metagenome | Rhizosphere |
| 27 | 3300049661 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control | Metagenome | Rhizosphere |
| 28 | 3300049681 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought | Metagenome | Rhizosphere |
| 29 | 3300049708 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control | Metagenome | Rhizosphere |
| 30 | 2512564039 | Paenibacillus mucilaginosus 3016 | Isolate | Rhizosphere |
| 31 | 2548877040 | Paenibacillus sonchi X19-5 | Isolate | Rhizosphere |
| 32 | 2571042143 | Paenibacillus graminis RSA19 | Isolate | Unclassified |
| 33 | 2576861424 | Paenibacillus sabinae T27 | Isolate | Rhizosphere |
| 34 | 2585428059 | Paenibacillus chondroitinus OK414 | Isolate | Rhizosphere |
| 35 | 2593339198 | Paenibacillus sp. UNCCL117 | Isolate | Unclassified |
| 36 | 2643221543 | Paenibacillus sp. Root52 | Isolate | Unclassified |
| 37 | 2643221676 | Paenibacillus sp. Root444D2 | Isolate | Unclassified |
| 38 | 2728368933 | Paenibacillus jilunlii DSM 23019 | Isolate | Rhizosphere |
| 39 | 2791355222 | Paenibacillus oryzae 1DrF-4 | Isolate | Unclassified |
| 40 | 2802428803 | Paenibacillus peoriae NMA1017 | Isolate | Rhizosphere |
| 41 | 2808606368 | Microbacterium sp. SLBN-1 | Isolate | Unclassified |
| 42 | 2818991459 | Paenibacillus sp. 597 | Isolate | Unclassified |
| 43 | 2821111986 | Paenibacillus illinoisensis 582 | Isolate | Unclassified |
| 44 | 2857453340 | Paenibacillus sp. R-74130 | Isolate | Unclassified |
| 45 | 2857472729 | Cohnella sp. R-74144 | Isolate | Unclassified |
| 46 | 2864733723 | Paenibacillus sp. JGP012 | Isolate | Rhizosphere |
| 47 | 2865002811 | Paenibacillus sp. R-74131 | Isolate | Unclassified |
| 48 | 2885526491 | Paenibacillus sp. LK1 | Isolate | Rhizosphere |
| 49 | 2888578766 | Paenibacillus lycopersici 12200R-189 | Isolate | Rhizosphere |
| 50 | 2889042446 | Paenibacillus sp. 37 | Isolate | Rhizosphere |
| 51 | 2889049205 | Paenibacillus rhizovicinus 14171R-81 | Isolate | Rhizosphere |
| 52 | 2904113452 | Paenibacillus paridis py1325 | Isolate | Unclassified |
| 53 | 2904162308 | Paenibacillus sp. AD87 | Isolate | Unclassified |
| 54 | 2904490793 | Paenibacillus sp. 1295 | Isolate | Rhizosphere |
| 55 | 2904755435 | Paenibacillus aceris KACC 19194 | Isolate | Rhizosphere |
| 56 | 2919160200 | Paenibacillus sp. 2003 | Isolate | Unclassified |
| 57 | 2919425241 | Bacillus sp. 3255 | Isolate | Rhizosphere |
| 58 | 2931384279 | Paenibacillus sp. DR312 | Isolate | Rhizosphere |
| 59 | 2938649242 | Paenibacillus helianthi P26E | Isolate | Rhizosphere |
| 60 | 2939679117 | Paenibacillus sp. 4624 | Isolate | Rhizosphere |
| 61 | 2945991243 | Paenibacillus sp. B21a W2I17 | Isolate | Rhizosphere |
| 62 | 2946053406 | Paenibacillus sp. W4I10 | Isolate | Rhizosphere |
| 63 | 2968558590 | Paenibacillus sp. P3E | Isolate | Rhizosphere |
| 64 | 2971403814 | Paenibacillus tritici LMG 29502 | Isolate | Unclassified |
| 65 | 2971410472 | Paenibacillus oryzisoli 1ZS3-15 | Isolate | Unclassified |
| 66 | 2980182181 | Paenibacillus cymbidii R196 | Isolate | Unclassified |
| 67 | 2988225383 | Paenibacillus sp. P46E | Isolate | Rhizosphere |
| 68 | 2996632988 | Paenibacillus sp. P32E | Isolate | Rhizosphere |
| 69 | 3006969106 | Bacillus sp. FJAT-50079 | Isolate | Rhizosphere |
| 70 | 3006988479 | Bacillus sp. FJAT-49711 | Isolate | Rhizosphere |
| 71 | 8007371054 | Clostridium sp. YIM B02515 | Isolate | Unclassified |
| 72 | 8046991243 | Cohnella rhizosphaerae DSM 28161 | Isolate | Rhizosphere |
| 73 | 8054465665 | Paenibacillus sonchi IIRRBNF1 | Isolate | Rhizosphere |
| 74 | 8054795415 | Paenibacillus periandrae PM10 | Isolate | Nodule |
| 75 | 8056533031 | Paenibacillus qinlingensis TEGT-2 | Isolate | Unclassified |
| 76 | 8057473075 | Paenibacillus endoradicis T3-5-0-4 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 43.11 |
| Metatranscriptomes | 0.6 |
| Isolates | 56.29 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 7.78 |
| Nodule | 2.4 |
| Rhizoplane | 0.6 |
| Rhizosphere | 40.12 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 2.99 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0496124_0002013 | 3300048927 | Bacteria | 27672 |
| 2 | JGI25162J39368_1008350 | 3300002737 | Bacteria | 1494 |
| 3 | Ga0055541_1000605 | 3300003841 | Bacteria | 9562 |
| 4 | Ga0055541_1003236 | 3300003841 | Bacteria | 3089 |
| 5 | Ga0055541_1009498 | 3300003841 | Bacteria | 1500 |
| 6 | Ga0055541_1011150 | 3300003841 | Bacteria | 1327 |
| 7 | Ga0105244_10003918 | 3300009036 | Bacteria | 10466 |
| 8 | Ga0105244_10011579 | 3300009036 | Bacteria | 5274 |
| 9 | Ga0209566_100022 | 3300025225 | Bacteria | 403259 |
| 10 | Ga0209566_100054 | 3300025225 | Bacteria | 221422 |
| 11 | Ga0209566_100111 | 3300025225 | Bacteria | 111965 |
| 12 | Ga0209566_103898 | 3300025225 | Bacteria | 2146 |
| 13 | Ga0209437_100726 | 3300025233 | Bacteria | 16731 |
| 14 | Ga0209675_1004801 | 3300025291 | Bacteria | 5871 |
| 15 | Ga0207655_1040044 | 3300025728 | Bacteria | 2028 |
| 16 | Ga0307409_100063916 | 3300031995 | Bacteria | 2889 |
| 17 | Ga0307409_100065394 | 3300031995 | Bacteria | 2861 |
| 18 | Ga0307416_100025431 | 3300032002 | Bacteria | 4339 |
| 19 | Ga0395899_0009850 | 3300037312 | Bacteria | 7330 |
| 20 | Ga0395899_0039748 | 3300037312 | Bacteria | 3520 |
| 21 | Ga0395899_0186570 | 3300037312 | Bacteria | 1453 |
| 22 | Ga0439449_0000507 | 3300042007 | Bacteria | 14574 |
| 23 | Ga0439449_0059819 | 3300042007 | Bacteria | 1406 |
| 24 | Ga0453683_0017050 | 3300044673 | Unclassified | 4682 |
| 25 | Ga0453684_0569819 | 3300044712 | Bacteria | 1245 |
| 26 | Ga0495637_0058296 | 3300046520 | Bacteria | 1592 |
| 27 | Ga0495660_0039931 | 3300046810 | Bacteria | 2603 |
| 28 | Ga0496112_0067948 | 3300048915 | Bacteria | 3519 |
| 29 | Ga0496116_0002088 | 3300048919 | Bacteria | 21362 |
| 30 | Ga0496116_0005247 | 3300048919 | Bacteria | 12109 |
| 31 | Ga0496116_0009006 | 3300048919 | Bacteria | 8576 |
| 32 | Ga0496116_0011552 | 3300048919 | Bacteria | 7293 |
| 33 | Ga0496116_0016700 | 3300048919 | Bacteria | 5733 |
| 34 | Ga0496116_0018344 | 3300048919 | Bacteria | 5397 |
| 35 | Ga0496116_0020245 | 3300048919 | Bacteria | 5059 |
| 36 | Ga0496116_0043439 | 3300048919 | Unclassified | 3062 |
| 37 | Ga0496116_0085829 | 3300048919 | Bacteria | 1933 |
| 38 | Ga0496120_0155730 | 3300048923 | Bacteria | 1144 |
| 39 | Ga0496121_0102095 | 3300048924 | Bacteria | 2210 |
| 40 | Ga0496121_0173196 | 3300048924 | Bacteria | 1565 |
| 41 | Ga0496122_0000829 | 3300048925 | Bacteria | 58836 |
| 42 | Ga0496122_0001049 | 3300048925 | Bacteria | 48374 |
| 43 | Ga0496122_0025286 | 3300048925 | Bacteria | 5160 |
| 44 | Ga0496122_0026738 | 3300048925 | Bacteria | 4962 |
| 45 | Ga0496122_0027056 | 3300048925 | Bacteria | 4917 |
| 46 | Ga0496122_0040852 | 3300048925 | Bacteria | 3679 |
| 47 | Ga0496122_0043056 | 3300048925 | Unclassified | 3542 |
| 48 | Ga0496122_0043937 | 3300048925 | Bacteria | 3494 |
| 49 | Ga0496122_0199173 | 3300048925 | Bacteria | 1173 |
| 50 | Ga0496123_0004619 | 3300048926 | Bacteria | 14317 |
| 51 | Ga0496123_0024464 | 3300048926 | Bacteria | 4589 |
| 52 | Ga0496123_0031858 | 3300048926 | Bacteria | 3827 |
| 53 | Ga0496123_0056497 | 3300048926 | Unclassified | 2564 |
| 54 | Ga0496123_0072074 | 3300048926 | Unclassified | 2151 |
| 55 | Ga0496124_0000726 | 3300048927 | Bacteria | 54096 |
| 56 | Ga0496124_0001055 | 3300048927 | Bacteria | 43508 |
| 57 | Ga0496124_0002246 | 3300048927 | Bacteria | 25686 |
| 58 | Ga0496125_0000075 | 3300048928 | Bacteria | 234414 |
| 59 | Ga0496125_0000739 | 3300048928 | Bacteria | 54062 |
| 60 | Ga0496125_0001395 | 3300048928 | Bacteria | 35349 |
| 61 | Ga0496125_0003012 | 3300048928 | Bacteria | 21074 |
| 62 | Ga0496125_0004431 | 3300048928 | Bacteria | 16201 |
| 63 | Ga0496125_0007692 | 3300048928 | Bacteria | 11421 |
| 64 | Ga0496125_0210153 | 3300048928 | Bacteria | 1264 |
| 65 | Ga0496126_0000288 | 3300048929 | Bacteria | 106694 |
| 66 | Ga0496126_0000714 | 3300048929 | Bacteria | 60351 |
| 67 | Ga0501312_000756 | 3300049528 | Bacteria | 2813 |
| 68 | Ga0501202_023065 | 3300049652 | Bacteria | 1253 |
| 69 | Ga0501217_004399 | 3300049661 | Bacteria | 2894 |
| 70 | Ga0501251_008651 | 3300049681 | Bacteria | 1157 |
| 71 | Ga0501245_005140 | 3300049708 | Bacteria | 1810 |
| 72 | 2512731535 | 2512564039 | Bacteria | 8739048 |
| 73 | 2550899850 | 2548877040 | Bacteria | 7507281 |
| 74 | 2550905632 | 2548877040 | Bacteria | 7507281 |
| 75 | 2550906319 | 2548877040 | Bacteria | 7507281 |
| 76 | 2550906324 | 2548877040 | Bacteria | 7507281 |
| 77 | 2571531506 | 2571042143 | Bacteria | 6986194 |
| 78 | 2578337955 | 2576861424 | Bacteria | 5270569 |
| 79 | 2587739493 | 2585428059 | Bacteria | 8696589 |
| 80 | 2587739757 | 2585428059 | Bacteria | 8696589 |
| 81 | 2587740008 | 2585428059 | Bacteria | 8696589 |
| 82 | 2587741443 | 2585428059 | Bacteria | 8696589 |
| 83 | 2587741476 | 2585428059 | Bacteria | 8696589 |
| 84 | 2587742211 | 2585428059 | Bacteria | 8696589 |
| 85 | 2595317109 | 2593339198 | Bacteria | 7267884 |
| 86 | 2595317134 | 2593339198 | Bacteria | 7267884 |
| 87 | 2595317161 | 2593339198 | Bacteria | 7267884 |
| 88 | 2595318921 | 2593339198 | Bacteria | 7267884 |
| 89 | 2643735876 | 2643221543 | Bacteria | 6628015 |
| 90 | 2644424092 | 2643221676 | Bacteria | 8119172 |
| 91 | 2644424379 | 2643221676 | Bacteria | 8119172 |
| 92 | 2644426255 | 2643221676 | Bacteria | 8119172 |
| 93 | 2644427894 | 2643221676 | Bacteria | 8119172 |
| 94 | 2644428298 | 2643221676 | Bacteria | 8119172 |
| 95 | 2728530088 | 2728368933 | Bacteria | 7044283 |
| 96 | 2728534309 | 2728368933 | Bacteria | 7044283 |
| 97 | 2793184250 | 2791355222 | Bacteria | 5898266 |
| 98 | 2793184854 | 2791355222 | Bacteria | 5898266 |
| 99 | 2793185324 | 2791355222 | Bacteria | 5898266 |
| 100 | 2793185504 | 2791355222 | Bacteria | 5898266 |
| 101 | 2802436631 | 2802428803 | Bacteria | 5806948 |
| 102 | 2808883909 | 2808606368 | Bacteria | 3174172 |
| 103 | 2819670736 | 2818991459 | Bacteria | 8736032 |
| 104 | 2821112234 | 2821111986 | Bacteria | 6894338 |
| 105 | 2821113701 | 2821111986 | Bacteria | 6894338 |
| 106 | 2857453479 | 2857453340 | Bacteria | 8090534 |
| 107 | 2857455078 | 2857453340 | Bacteria | 8090534 |
| 108 | 2857456035 | 2857453340 | Bacteria | 8090534 |
| 109 | 2857473330 | 2857472729 | Bacteria | 6568124 |
| 110 | 2857475410 | 2857472729 | Bacteria | 6568124 |
| 111 | 2864733998 | 2864733723 | Bacteria | 6770668 |
| 112 | 2864734026 | 2864733723 | Bacteria | 6770668 |
| 113 | 2865004865 | 2865002811 | Bacteria | 6333767 |
| 114 | 2885527074 | 2885526491 | Bacteria | 7164189 |
| 115 | 2888579765 | 2888578766 | Bacteria | 6743310 |
| 116 | 2888580268 | 2888578766 | Bacteria | 6743310 |
| 117 | 2888584155 | 2888578766 | Bacteria | 6743310 |
| 118 | 2889044675 | 2889042446 | Bacteria | 7618936 |
| 119 | 2889053426 | 2889049205 | Bacteria | 7524325 |
| 120 | 2889054014 | 2889049205 | Bacteria | 7524325 |
| 121 | 2904117995 | 2904113452 | Bacteria | 7796941 |
| 122 | 2904119364 | 2904113452 | Bacteria | 7796941 |
| 123 | 2904119936 | 2904113452 | Bacteria | 7796941 |
| 124 | 2904165599 | 2904162308 | Bacteria | 7086713 |
| 125 | 2904491561 | 2904490793 | Bacteria | 7046938 |
| 126 | 2904760861 | 2904755435 | Bacteria | 7986759 |
| 127 | 2919160819 | 2919160200 | Bacteria | 6929020 |
| 128 | 2919428737 | 2919425241 | Bacteria | 8055701 |
| 129 | 2931388111 | 2931384279 | Bacteria | 7299545 |
| 130 | 2938650036 | 2938649242 | Bacteria | 7118381 |
| 131 | 2938653844 | 2938649242 | Bacteria | 7118381 |
| 132 | 2938654961 | 2938649242 | Bacteria | 7118381 |
| 133 | 2939681522 | 2939679117 | Bacteria | 6921672 |
| 134 | 2939681552 | 2939679117 | Bacteria | 6921672 |
| 135 | 2945993281 | 2945991243 | Bacteria | 7008369 |
| 136 | 2946056036 | 2946053406 | Bacteria | 6978655 |
| 137 | 2968560872 | 2968558590 | Bacteria | 6956864 |
| 138 | 2968562538 | 2968558590 | Bacteria | 6956864 |
| 139 | 2971407082 | 2971403814 | Bacteria | 7370929 |
| 140 | 2971407096 | 2971403814 | Bacteria | 7370929 |
| 141 | 2971409987 | 2971403814 | Bacteria | 7370929 |
| 142 | 2971412000 | 2971410472 | Bacteria | 8311090 |
| 143 | 2971413704 | 2971410472 | Bacteria | 8311090 |
| 144 | 2980183749 | 2980182181 | Bacteria | 9454109 |
| 145 | 2980188940 | 2980182181 | Bacteria | 9454109 |
| 146 | 2988226385 | 2988225383 | Bacteria | 7221625 |
| 147 | 2988231077 | 2988225383 | Bacteria | 7221625 |
| 148 | 2996635876 | 2996632988 | Bacteria | 6921523 |
| 149 | 2996639325 | 2996632988 | Bacteria | 6921523 |
| 150 | 3006971036 | 3006969106 | Bacteria | 4739423 |
| 151 | 3006989943 | 3006988479 | Bacteria | 4767936 |
| 152 | 8007372285 | 8007371054 | Bacteria | 4849201 |
| 153 | 8046993360 | 8046991243 | Bacteria | 8497463 |
| 154 | 8046996082 | 8046991243 | Bacteria | 8497463 |
| 155 | 8054470084 | 8054465665 | Bacteria | 7323556 |
| 156 | 8054472154 | 8054465665 | Bacteria | 7323556 |
| 157 | 8054795563 | 8054795415 | Bacteria | 9785225 |
| 158 | 8054800804 | 8054795415 | Bacteria | 9785225 |
| 159 | 8054801159 | 8054795415 | Bacteria | 9785225 |
| 160 | 8054802593 | 8054795415 | Bacteria | 9785225 |
| 161 | 8056534270 | 8056533031 | Bacteria | 8964429 |
| 162 | 8056534295 | 8056533031 | Bacteria | 8964429 |
| 163 | 8056537667 | 8056533031 | Bacteria | 8964429 |
| 164 | 8056540483 | 8056533031 | Bacteria | 8964429 |
| 165 | 8057475529 | 8057473075 | Bacteria | 5892720 |
| 166 | Ga0496124_0002013 | |||
| 167 | JGI25162J39368_1008350 | |||
| 168 | Ga0055541_1000605 | |||
| 169 | Ga0055541_1003236 | |||
| 170 | Ga0055541_1009498 | |||
| 171 | Ga0055541_1011150 | |||
| 172 | Ga0105244_10003918 | |||
| 173 | Ga0105244_10011579 | |||
| 174 | Ga0209566_100022 | |||
| 175 | Ga0209566_100054 | |||
| 176 | Ga0209566_100111 | |||
| 177 | Ga0209566_103898 | |||
| 178 | Ga0209437_100726 | |||
| 179 | Ga0209675_1004801 | |||
| 180 | Ga0207655_1040044 | |||
| 181 | Ga0307409_100063916 | |||
| 182 | Ga0307409_100065394 | |||
| 183 | Ga0307416_100025431 | |||
| 184 | Ga0395899_0009850 | |||
| 185 | Ga0395899_0039748 | |||
| 186 | Ga0395899_0186570 | |||
| 187 | Ga0439449_0000507 | |||
| 188 | Ga0439449_0059819 | |||
| 189 | Ga0453683_0017050 | |||
| 190 | Ga0453684_0569819 | |||
| 191 | Ga0495637_0058296 | |||
| 192 | Ga0495660_0039931 | |||
| 193 | Ga0496112_0067948 | |||
| 194 | Ga0496116_0002088 | |||
| 195 | Ga0496116_0005247 | |||
| 196 | Ga0496116_0009006 | |||
| 197 | Ga0496116_0011552 | |||
| 198 | Ga0496116_0016700 | |||
| 199 | Ga0496116_0018344 | |||
| 200 | Ga0496116_0020245 | |||
| 201 | Ga0496116_0043439 | |||
| 202 | Ga0496116_0085829 | |||
| 203 | Ga0496120_0155730 | |||
| 204 | Ga0496121_0102095 | |||
| 205 | Ga0496121_0173196 | |||
| 206 | Ga0496122_0000829 | |||
| 207 | Ga0496122_0001049 | |||
| 208 | Ga0496122_0025286 | |||
| 209 | Ga0496122_0026738 | |||
| 210 | Ga0496122_0027056 | |||
| 211 | Ga0496122_0040852 | |||
| 212 | Ga0496122_0043056 | |||
| 213 | Ga0496122_0043937 | |||
| 214 | Ga0496122_0199173 | |||
| 215 | Ga0496123_0004619 | |||
| 216 | Ga0496123_0024464 | |||
| 217 | Ga0496123_0031858 | |||
| 218 | Ga0496123_0056497 | |||
| 219 | Ga0496123_0072074 | |||
| 220 | Ga0496124_0000726 | |||
| 221 | Ga0496124_0001055 | |||
| 222 | Ga0496124_0002246 | |||
| 223 | Ga0496125_0000075 | |||
| 224 | Ga0496125_0000739 | |||
| 225 | Ga0496125_0001395 | |||
| 226 | Ga0496125_0003012 | |||
| 227 | Ga0496125_0004431 | |||
| 228 | Ga0496125_0007692 | |||
| 229 | Ga0496125_0210153 | |||
| 230 | Ga0496126_0000288 | |||
| 231 | Ga0496126_0000714 | |||
| 232 | Ga0501312_000756 | |||
| 233 | Ga0501202_023065 | |||
| 234 | Ga0501217_004399 | |||
| 235 | Ga0501251_008651 | |||
| 236 | Ga0501245_005140 | |||
| 237 | 2512731535 | |||
| 238 | 2550899850 | |||
| 239 | 2550905632 | |||
| 240 | 2550906319 | |||
| 241 | 2550906324 | |||
| 242 | 2571531506 | |||
| 243 | 2578337955 | |||
| 244 | 2587739493 | |||
| 245 | 2587739757 | |||
| 246 | 2587740008 | |||
| 247 | 2587741443 | |||
| 248 | 2587741476 | |||
| 249 | 2587742211 | |||
| 250 | 2595317109 | |||
| 251 | 2595317134 | |||
| 252 | 2595317161 | |||
| 253 | 2595318921 | |||
| 254 | 2643735876 | |||
| 255 | 2644424092 | |||
| 256 | 2644424379 | |||
| 257 | 2644426255 | |||
| 258 | 2644427894 | |||
| 259 | 2644428298 | |||
| 260 | 2728530088 | |||
| 261 | 2728534309 | |||
| 262 | 2793184250 | |||
| 263 | 2793184854 | |||
| 264 | 2793185324 | |||
| 265 | 2793185504 | |||
| 266 | 2802436631 | |||
| 267 | 2808883909 | |||
| 268 | 2819670736 | |||
| 269 | 2821112234 | |||
| 270 | 2821113701 | |||
| 271 | 2857453479 | |||
| 272 | 2857455078 | |||
| 273 | 2857456035 | |||
| 274 | 2857473330 | |||
| 275 | 2857475410 | |||
| 276 | 2864733998 | |||
| 277 | 2864734026 | |||
| 278 | 2865004865 | |||
| 279 | 2885527074 | |||
| 280 | 2888579765 | |||
| 281 | 2888580268 | |||
| 282 | 2888584155 | |||
| 283 | 2889044675 | |||
| 284 | 2889053426 | |||
| 285 | 2889054014 | |||
| 286 | 2904117995 | |||
| 287 | 2904119364 | |||
| 288 | 2904119936 | |||
| 289 | 2904165599 | |||
| 290 | 2904491561 | |||
| 291 | 2904760861 | |||
| 292 | 2919160819 | |||
| 293 | 2919428737 | |||
| 294 | 2931388111 | |||
| 295 | 2938650036 | |||
| 296 | 2938653844 | |||
| 297 | 2938654961 | |||
| 298 | 2939681522 | |||
| 299 | 2939681552 | |||
| 300 | 2945993281 | |||
| 301 | 2946056036 | |||
| 302 | 2968560872 | |||
| 303 | 2968562538 | |||
| 304 | 2971407082 | |||
| 305 | 2971407096 | |||
| 306 | 2971409987 | |||
| 307 | 2971412000 | |||
| 308 | 2971413704 | |||
| 309 | 2980183749 | |||
| 310 | 2980188940 | |||
| 311 | 2988226385 | |||
| 312 | 2988231077 | |||
| 313 | 2996635876 | |||
| 314 | 2996639325 | |||
| 315 | 3006971036 | |||
| 316 | 3006989943 | |||
| 317 | 8007372285 | |||
| 318 | 8046993360 | |||
| 319 | 8046996082 | |||
| 320 | 8054470084 | |||
| 321 | 8054472154 | |||
| 322 | 8054795563 | |||
| 323 | 8054800804 | |||
| 324 | 8054801159 | |||
| 325 | 8054802593 | |||
| 326 | 8056534270 | |||
| 327 | 8056534295 | |||
| 328 | 8056537667 | |||
| 329 | 8056540483 | |||
| 330 | 8057475529 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
PF00528
BPD_transp_1
Binding-protein-dependent transport system inner membrane component
139
352
0.88
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4tqu-assembly1.cif.gz_M | crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate | 0.9146 | 25 | 322 |
| 4tqu-assembly1.cif.gz_M | crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate | 0.9085 | 25 | 322 |
| 4tqv-assembly4.cif.gz_M | crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate | 0.9079 | 25 | 322 |
| 4xtc-assembly1.cif.gz_M | crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein | 0.9052 | 25 | 323 |
| 4tqv-assembly4.cif.gz_M | crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate | 0.9019 | 25 | 322 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4tquM01 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.9197 | 76 | 322 | 1.10.3720.10 |
| 4tquM01 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.9126 | 76 | 322 | 1.10.3720.10 |
| af_O53484_49_294_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.8901 | 76 | 320 | 1.10.3720.10 |
| af_P10905_52_292_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.8877 | 76 | 320 | 1.10.3720.10 |
| af_P71896_49_286_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.8872 | 76 | 320 | 1.10.3720.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A416ESL2-F1-model_v4 | Sugar ABC transporter permease | 0.9446 | 39 | 328 |
GO:0005886
GO:0055085 |
| AF-A0A2R5F5M2-F1-model_v4 | Sugar ABC transporter permease | 0.9445 | 62 | 328 |
GO:0005886
GO:0055085 |
| AF-A0A8A5ZJQ4-F1-model_v4 | deleted | 0.9441 | 58 | 328 |
|
| AF-A0A1D8JIS8-F1-model_v4 | Protein lplB | 0.9423 | 23 | 320 |
GO:0005886
GO:0055085 |
| AF-A0A328UEB0-F1-model_v4 | Sugar ABC transporter permease | 0.9416 | 57 | 328 |
GO:0005886
GO:0055085 |