F247332
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 165 | 113 | 330 | 352 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2946024296|2946025787 |
| Length | 373 |
| Sequence | TQTAWTAPDLHLPETRTTRQQPAAAPAAPAVAEWPRTSRLVDEQIVDIITSAIDATNSVQARGLWRHLADSFEGGKRLRPQLVWTSYAAFGGTDALRCSALGAAFELLHAALVIHDDVIDQDLTRRGRTNIAGIYGRGALERGMTEEEARHVGRSVAIVAGDMLLAAAFRAVRELDCPEPARQAIADLMDRAVADAASGELEDILIAQDASISLGDVLEMERQKTAVYSFAAPLAAGALLAGAPAASAAALELLGEKVGIAYQVIDDVLGTFGDPGQTGKSVTSDLRGGKMTALTALGKRNPQVSSRLHAVTDTDDVEALKAALHRAGADDSALALAHELVSEALQDAADAGLPAPLRTDLTRICNHVLHREN |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 2 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 4 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 7 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 8 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 9 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 10 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 11 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 12 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 13 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 14 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 15 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 16 | 3300006186 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 | Metagenome | Endosphere |
| 17 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 18 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 19 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 20 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 26 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 42 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 43 | 3300031649 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM | Metagenome | Unclassified |
| 44 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 45 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 46 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 47 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 48 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 49 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 50 | 3300041443 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG | Metagenome | Rhizoplane |
| 51 | 3300041452 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG | Metagenome | Rhizoplane |
| 52 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 53 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 54 | 3300046457 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere | Metagenome | Rhizosphere |
| 55 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 56 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 57 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 58 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 59 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 60 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 61 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 62 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 63 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 64 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 65 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 66 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 67 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 68 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 69 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 70 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 71 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 72 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 73 | 3300050516 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation | Metagenome | Endosphere |
| 74 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 75 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 76 | 3300053098 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere | Metagenome | Endosphere |
| 77 | 3300053104 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere | Metagenome | Endosphere |
| 78 | 3300053133 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere | Metagenome | Endosphere |
| 79 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 80 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 81 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 82 | 3300053142 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere | Metagenome | Endosphere |
| 83 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 84 | 3300053155 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere | Metagenome | Endosphere |
| 85 | 3300053730 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere | Metagenome | Endosphere |
| 86 | 2946024296 | Arthrobacter woluwensis W4I2 | Isolate | Rhizosphere |
| 87 | 2537561592 | Arthrobacter crystallopoietes BAB-32 | Isolate | Rhizosphere |
| 88 | 2643221635 | Yonghaparkia sp. Root332 | Isolate | Unclassified |
| 89 | 2751185788 | Curtobacterium pusillum AA3 | Isolate | Unclassified |
| 90 | 2808606366 | Arthrobacter sp. SLBN-83 | Isolate | Unclassified |
| 91 | 2844852863 | Herbiconiux flava DSM 26474 | Isolate | Rhizosphere |
| 92 | 2852643534 | Leifsonia sp. AK011 | Isolate | Rhizosphere |
| 93 | 2857729791 | Plantibacter sp. R-72288 | Isolate | Unclassified |
| 94 | 2857733635 | Salinibacterium sp. R-73062 | Isolate | Unclassified |
| 95 | 2857737099 | Lysinimonas sp. R-73066 | Isolate | Unclassified |
| 96 | 2862993130 | Planctomonas deserti 13S1-3 v2 | Isolate | Rhizosphere |
| 97 | 2870622029 | Conyzicola lurida DSM 105784 | Isolate | Unclassified |
| 98 | 2904430863 | Curtobacterium oceanosedimentum 1519 | Isolate | Rhizosphere |
| 99 | 2904501621 | Curtobacterium sp. 1909 | Isolate | Unclassified |
| 100 | 2908674828 | Curtobacterium sp. 1517 | Isolate | Rhizosphere |
| 101 | 2909074476 | Curtobacterium sp. 1310 | Isolate | Rhizosphere |
| 102 | 2919039151 | Curtobacterium sp. 260 | Isolate | Rhizosphere |
| 103 | 2919042368 | Curtobacterium sp. 320 | Isolate | Rhizosphere |
| 104 | 2920879853 | Kocuria salina CV6 | Isolate | Unclassified |
| 105 | 2928104781 | Curtobacterium sp. 1544 | Isolate | Rhizosphere |
| 106 | 2928121344 | Plantibacter flavus 1756 | Isolate | Rhizosphere |
| 107 | 2928500415 | Curtobacterium oceanosedimentum 1257 | Isolate | Rhizosphere |
| 108 | 2939657138 | Conyzicola nivalis 2857 | Isolate | Rhizosphere |
| 109 | 2964326757 | Planctomonas psychrotolerans J5903 | Isolate | Rhizosphere |
| 110 | 2966921586 | Rathayibacter agropyri 617 | Isolate | Rhizosphere |
| 111 | 2966924647 | Frigoribacterium sp. 2355 | Isolate | Rhizosphere |
| 112 | 2984551494 | Curtobacterium sp. SORGH_AS776 | Isolate | Aerial Root |
| 113 | 8056037122 | Herbiconiux gentiana CPCC 205716 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 83.03 |
| Metatranscriptomes | 0 |
| Isolates | 16.97 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.61 |
| Bulb | 0 |
| Endosphere | 20 |
| Nodule | 0 |
| Rhizoplane | 1.82 |
| Rhizosphere | 58.18 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | rootH1_10224989 | 3300003323 | Bacteria | 5830 |
| 2 | Ga0070658_10023585 | 3300005327 | Bacteria | 4937 |
| 3 | Ga0068868_100051964 | 3300005338 | Bacteria | 3226 |
| 4 | Ga0070659_100011117 | 3300005366 | Bacteria | 6650 |
| 5 | Ga0070667_100018931 | 3300005367 | Bacteria | 5709 |
| 6 | Ga0070667_100036739 | 3300005367 | Bacteria | 4107 |
| 7 | Ga0070685_10015635 | 3300005466 | Bacteria | 4033 |
| 8 | Ga0068853_100027404 | 3300005539 | Bacteria | 4787 |
| 9 | Ga0068853_100034592 | 3300005539 | Bacteria | 4289 |
| 10 | Ga0068855_100040036 | 3300005563 | Bacteria | 5563 |
| 11 | Ga0068857_100035617 | 3300005577 | Bacteria | 4408 |
| 12 | Ga0068857_100104968 | 3300005577 | Bacteria | 2537 |
| 13 | Ga0068857_100117883 | 3300005577 | Bacteria | 2389 |
| 14 | Ga0068856_100092914 | 3300005614 | Bacteria | 3002 |
| 15 | Ga0068852_100017944 | 3300005616 | Bacteria | 5565 |
| 16 | Ga0068852_100032654 | 3300005616 | Bacteria | 4312 |
| 17 | Ga0068851_10000030 | 3300005834 | Bacteria | 114502 |
| 18 | Ga0068858_100000867 | 3300005842 | Bacteria | 31292 |
| 19 | Ga0075365_10012706 | 3300006038 | Bacteria | 5010 |
| 20 | Ga0075365_10035887 | 3300006038 | Bacteria | 3210 |
| 21 | Ga0075364_10064452 | 3300006051 | Bacteria | 2405 |
| 22 | Ga0075369_10004377 | 3300006186 | Bacteria | 5213 |
| 23 | Ga0075369_10073781 | 3300006186 | Bacteria | 1505 |
| 24 | Ga0105240_10018585 | 3300009093 | Bacteria | 9325 |
| 25 | Ga0105240_10105912 | 3300009093 | Bacteria | 3412 |
| 26 | Ga0105240_10109169 | 3300009093 | Bacteria | 3351 |
| 27 | Ga0105245_10002553 | 3300009098 | Bacteria | 16399 |
| 28 | Ga0105245_10036879 | 3300009098 | Bacteria | 4345 |
| 29 | Ga0105241_10005211 | 3300009174 | Bacteria | 9598 |
| 30 | Ga0105248_10050853 | 3300009177 | Bacteria | 4649 |
| 31 | Ga0105237_10011097 | 3300009545 | Bacteria | 9548 |
| 32 | Ga0105238_10157668 | 3300009551 | Bacteria | 2245 |
| 33 | Ga0105238_10360211 | 3300009551 | Bacteria | 1444 |
| 34 | Ga0105239_10210422 | 3300010375 | Bacteria | 2180 |
| 35 | Ga0105239_10242678 | 3300010375 | Bacteria | 2022 |
| 36 | Ga0157369_10116884 | 3300013105 | Bacteria | 2831 |
| 37 | Ga0209148_1002001 | 3300025254 | Bacteria | 8026 |
| 38 | Ga0207656_10000001 | 3300025321 | Bacteria | 1323684 |
| 39 | Ga0207654_10000001 | 3300025911 | Bacteria | 1816198 |
| 40 | Ga0207695_10001965 | 3300025913 | Bacteria | 31843 |
| 41 | Ga0207695_10015461 | 3300025913 | Bacteria | 8984 |
| 42 | Ga0207695_10168784 | 3300025913 | Bacteria | 2115 |
| 43 | Ga0207671_10000001 | 3300025914 | Bacteria | 1318881 |
| 44 | Ga0207694_10000019 | 3300025924 | Bacteria | 312382 |
| 45 | Ga0207694_10199403 | 3300025924 | Bacteria | 1628 |
| 46 | Ga0207687_10025577 | 3300025927 | Bacteria | 3950 |
| 47 | Ga0207690_10000713 | 3300025932 | Bacteria | 21429 |
| 48 | Ga0207711_10012621 | 3300025941 | Bacteria | 7017 |
| 49 | Ga0207667_10000732 | 3300025949 | Bacteria | 42642 |
| 50 | Ga0207667_10030283 | 3300025949 | Bacteria | 5856 |
| 51 | Ga0207658_10022543 | 3300025986 | Bacteria | 4386 |
| 52 | Ga0207703_10000121 | 3300026035 | Bacteria | 94523 |
| 53 | Ga0207639_10044316 | 3300026041 | Bacteria | 3345 |
| 54 | Ga0207639_10053229 | 3300026041 | Bacteria | 3088 |
| 55 | Ga0207702_10020059 | 3300026078 | Bacteria | 5539 |
| 56 | Ga0207702_10067668 | 3300026078 | Bacteria | 3066 |
| 57 | Ga0207674_10051519 | 3300026116 | Bacteria | 4201 |
| 58 | Ga0207674_10200605 | 3300026116 | Bacteria | 1944 |
| 59 | Ga0207698_10000112 | 3300026142 | Bacteria | 50642 |
| 60 | Ga0207698_10002190 | 3300026142 | Bacteria | 11564 |
| 61 | Ga0207698_10029137 | 3300026142 | Bacteria | 3949 |
| 62 | Ga0307515_10032687 | 3300028794 | Bacteria | 8604 |
| 63 | Ga0307408_100196058 | 3300031548 | Bacteria | 1631 |
| 64 | Ga0307514_10000884 | 3300031649 | Bacteria | 46892 |
| 65 | Ga0307409_100017921 | 3300031995 | Bacteria | 4738 |
| 66 | Ga0307409_100083840 | 3300031995 | Bacteria | 2586 |
| 67 | Ga0307416_100044345 | 3300032002 | Bacteria | 3491 |
| 68 | Ga0307416_100107219 | 3300032002 | Bacteria | 2451 |
| 69 | Ga0307415_100093390 | 3300032126 | Bacteria | 2185 |
| 70 | Ga0395900_0061656 | 3300037418 | Bacteria | 3855 |
| 71 | Ga0395898_0055584 | 3300037466 | Bacteria | 3860 |
| 72 | Ga0395901_0297261 | 3300038443 | Bacteria | 1674 |
| 73 | Ga0451789_0244076 | 3300041443 | Bacteria | 1354 |
| 74 | Ga0451793_0574769 | 3300041452 | Bacteria | 3058 |
| 75 | Ga0466968_0031155 | 3300044735 | Bacteria | 2212 |
| 76 | Ga0466970_0017095 | 3300044765 | Bacteria | 3745 |
| 77 | Ga0495590_0000341 | 3300046457 | Bacteria | 24142 |
| 78 | Ga0495650_0004895 | 3300046471 | Bacteria | 8951 |
| 79 | Ga0495672_0024578 | 3300047320 | Bacteria | 3877 |
| 80 | Ga0496102_0086504 | 3300048905 | Bacteria | 2895 |
| 81 | Ga0496117_0000174 | 3300048920 | Bacteria | 132648 |
| 82 | Ga0496117_0001948 | 3300048920 | Bacteria | 27543 |
| 83 | Ga0496117_0027411 | 3300048920 | Bacteria | 4441 |
| 84 | Ga0496117_0124789 | 3300048920 | Bacteria | 1574 |
| 85 | Ga0496118_0000281 | 3300048921 | Bacteria | 89915 |
| 86 | Ga0496118_0139702 | 3300048921 | Bacteria | 1538 |
| 87 | Ga0496120_0001676 | 3300048923 | Bacteria | 25428 |
| 88 | Ga0496120_0007867 | 3300048923 | Bacteria | 7855 |
| 89 | Ga0496120_0020434 | 3300048923 | Bacteria | 4208 |
| 90 | Ga0496120_0112023 | 3300048923 | Bacteria | 1424 |
| 91 | Ga0496121_0035143 | 3300048924 | Bacteria | 4496 |
| 92 | Ga0496121_0102467 | 3300048924 | Bacteria | 2205 |
| 93 | Ga0496122_0001547 | 3300048925 | Bacteria | 36476 |
| 94 | Ga0496122_0012003 | 3300048925 | Bacteria | 8688 |
| 95 | Ga0496123_0007193 | 3300048926 | Bacteria | 10563 |
| 96 | Ga0496123_0112872 | 3300048926 | Bacteria | 1549 |
| 97 | Ga0496124_0000323 | 3300048927 | Bacteria | 88352 |
| 98 | Ga0496124_0003432 | 3300048927 | Bacteria | 19404 |
| 99 | Ga0496124_0192542 | 3300048927 | Bacteria | 1558 |
| 100 | Ga0496126_0121068 | 3300048929 | Bacteria | 2269 |
| 101 | Ga0501034_0010449 | 3300049571 | Bacteria | 9669 |
| 102 | Ga0501034_0145457 | 3300049571 | Bacteria | 2348 |
| 103 | Ga0501034_0244149 | 3300049571 | Bacteria | 1741 |
| 104 | Ga0501034_0261989 | 3300049571 | Bacteria | 1671 |
| 105 | Ga0501043_0106980 | 3300049579 | Bacteria | 2196 |
| 106 | Ga0501067_0059963 | 3300049583 | Bacteria | 2106 |
| 107 | Ga0501067_0072879 | 3300049583 | Bacteria | 1903 |
| 108 | Ga0501070_0027147 | 3300049586 | Bacteria | 4802 |
| 109 | Ga0501073_0000063 | 3300049589 | Bacteria | 66508 |
| 110 | Ga0501073_0017479 | 3300049589 | Bacteria | 5195 |
| 111 | nmdc:mga00v17_125753_c1 | 3300050491 | Bacteria | 1636 |
| 112 | nmdc:mga00v17_27710_c1 | 3300050491 | Bacteria | 3310 |
| 113 | nmdc:mga0yw44_29321_c1 | 3300050492 | Bacteria | 3176 |
| 114 | nmdc:mga0yw44_8883_c1 | 3300050492 | Bacteria | 5037 |
| 115 | nmdc:mga0sz30_27108_c1 | 3300050516 | Bacteria | 2352 |
| 116 | Ga0500643_000124 | 3300053087 | Bacteria | 79663 |
| 117 | Ga0500651_0000264 | 3300053093 | Bacteria | 31212 |
| 118 | Ga0500650_0008353 | 3300053098 | Bacteria | 4090 |
| 119 | Ga0500556_0000059 | 3300053104 | Bacteria | 112837 |
| 120 | Ga0500556_0000133 | 3300053104 | Bacteria | 63387 |
| 121 | Ga0500655_000525 | 3300053133 | Bacteria | 7714 |
| 122 | Ga0500559_0000202 | 3300053136 | Bacteria | 47695 |
| 123 | Ga0500559_0003619 | 3300053136 | Bacteria | 7557 |
| 124 | Ga0500559_0004737 | 3300053136 | Bacteria | 6395 |
| 125 | Ga0500568_0000007 | 3300053139 | Bacteria | 292579 |
| 126 | Ga0500568_0000012 | 3300053139 | Bacteria | 225711 |
| 127 | Ga0500573_0000005 | 3300053140 | Bacteria | 315762 |
| 128 | Ga0500573_0021648 | 3300053140 | Bacteria | 3687 |
| 129 | Ga0500573_0027335 | 3300053140 | Bacteria | 3280 |
| 130 | Ga0500573_0036816 | 3300053140 | Bacteria | 2826 |
| 131 | Ga0500573_0183859 | 3300053140 | Bacteria | 1121 |
| 132 | Ga0500577_0026941 | 3300053142 | Bacteria | 1962 |
| 133 | Ga0500577_0076727 | 3300053142 | Bacteria | 1323 |
| 134 | Ga0500616_0000010 | 3300053153 | Bacteria | 761410 |
| 135 | Ga0500616_0001857 | 3300053153 | Bacteria | 19090 |
| 136 | Ga0500620_000019 | 3300053155 | Bacteria | 32857 |
| 137 | Ga0500645_007893 | 3300053730 | Bacteria | 3674 |
| 138 | 2946025787 | 2946024296 | Bacteria | 3508095 |
| 139 | 2537901141 | 2537561592 | Bacteria | 4348607 |
| 140 | 2644197533 | 2643221635 | Bacteria | 2632343 |
| 141 | 2753300620 | 2751185788 | Bacteria | 4541048 |
| 142 | 2808877968 | 2808606366 | Bacteria | 4415912 |
| 143 | 2844853571 | 2844852863 | Bacteria | 3849151 |
| 144 | 2852644083 | 2852643534 | Bacteria | 3013378 |
| 145 | 2857733185 | 2857729791 | Bacteria | 4040535 |
| 146 | 2857734972 | 2857733635 | Bacteria | 3532004 |
| 147 | 2857739002 | 2857737099 | Bacteria | 3104305 |
| 148 | 2862993922 | 2862993130 | Bacteria | 3860849 |
| 149 | 2870625426 | 2870622029 | Bacteria | 3643329 |
| 150 | 2904431453 | 2904430863 | Bacteria | 3486923 |
| 151 | 2904502465 | 2904501621 | Bacteria | 3401437 |
| 152 | 2908677477 | 2908674828 | Bacteria | 3382763 |
| 153 | 2909075955 | 2909074476 | Bacteria | 3436050 |
| 154 | 2919041385 | 2919039151 | Bacteria | 3391018 |
| 155 | 2919045298 | 2919042368 | Bacteria | 3905917 |
| 156 | 2920879897 | 2920879853 | Bacteria | 4216831 |
| 157 | 2928107233 | 2928104781 | Bacteria | 3877447 |
| 158 | 2928121889 | 2928121344 | Bacteria | 3972376 |
| 159 | 2928503404 | 2928500415 | Bacteria | 3384541 |
| 160 | 2939660530 | 2939657138 | Bacteria | 3740283 |
| 161 | 2964328018 | 2964326757 | Bacteria | 3290868 |
| 162 | 2966922982 | 2966921586 | Bacteria | 3092803 |
| 163 | 2966926941 | 2966924647 | Bacteria | 3268643 |
| 164 | 2984552704 | 2984551494 | Bacteria | 3877562 |
| 165 | 8056040370 | 8056037122 | Bacteria | 3854319 |
| 166 | rootH1_10224989 | |||
| 167 | Ga0070658_10023585 | |||
| 168 | Ga0068868_100051964 | |||
| 169 | Ga0070659_100011117 | |||
| 170 | Ga0070667_100018931 | |||
| 171 | Ga0070667_100036739 | |||
| 172 | Ga0070685_10015635 | |||
| 173 | Ga0068853_100027404 | |||
| 174 | Ga0068853_100034592 | |||
| 175 | Ga0068855_100040036 | |||
| 176 | Ga0068857_100035617 | |||
| 177 | Ga0068857_100104968 | |||
| 178 | Ga0068857_100117883 | |||
| 179 | Ga0068856_100092914 | |||
| 180 | Ga0068852_100017944 | |||
| 181 | Ga0068852_100032654 | |||
| 182 | Ga0068851_10000030 | |||
| 183 | Ga0068858_100000867 | |||
| 184 | Ga0075365_10012706 | |||
| 185 | Ga0075365_10035887 | |||
| 186 | Ga0075364_10064452 | |||
| 187 | Ga0075369_10004377 | |||
| 188 | Ga0075369_10073781 | |||
| 189 | Ga0105240_10018585 | |||
| 190 | Ga0105240_10105912 | |||
| 191 | Ga0105240_10109169 | |||
| 192 | Ga0105245_10002553 | |||
| 193 | Ga0105245_10036879 | |||
| 194 | Ga0105241_10005211 | |||
| 195 | Ga0105248_10050853 | |||
| 196 | Ga0105237_10011097 | |||
| 197 | Ga0105238_10157668 | |||
| 198 | Ga0105238_10360211 | |||
| 199 | Ga0105239_10210422 | |||
| 200 | Ga0105239_10242678 | |||
| 201 | Ga0157369_10116884 | |||
| 202 | Ga0209148_1002001 | |||
| 203 | Ga0207656_10000001 | |||
| 204 | Ga0207654_10000001 | |||
| 205 | Ga0207695_10001965 | |||
| 206 | Ga0207695_10015461 | |||
| 207 | Ga0207695_10168784 | |||
| 208 | Ga0207671_10000001 | |||
| 209 | Ga0207694_10000019 | |||
| 210 | Ga0207694_10199403 | |||
| 211 | Ga0207687_10025577 | |||
| 212 | Ga0207690_10000713 | |||
| 213 | Ga0207711_10012621 | |||
| 214 | Ga0207667_10000732 | |||
| 215 | Ga0207667_10030283 | |||
| 216 | Ga0207658_10022543 | |||
| 217 | Ga0207703_10000121 | |||
| 218 | Ga0207639_10044316 | |||
| 219 | Ga0207639_10053229 | |||
| 220 | Ga0207702_10020059 | |||
| 221 | Ga0207702_10067668 | |||
| 222 | Ga0207674_10051519 | |||
| 223 | Ga0207674_10200605 | |||
| 224 | Ga0207698_10000112 | |||
| 225 | Ga0207698_10002190 | |||
| 226 | Ga0207698_10029137 | |||
| 227 | Ga0307515_10032687 | |||
| 228 | Ga0307408_100196058 | |||
| 229 | Ga0307514_10000884 | |||
| 230 | Ga0307409_100017921 | |||
| 231 | Ga0307409_100083840 | |||
| 232 | Ga0307416_100044345 | |||
| 233 | Ga0307416_100107219 | |||
| 234 | Ga0307415_100093390 | |||
| 235 | Ga0395900_0061656 | |||
| 236 | Ga0395898_0055584 | |||
| 237 | Ga0395901_0297261 | |||
| 238 | Ga0451789_0244076 | |||
| 239 | Ga0451793_0574769 | |||
| 240 | Ga0466968_0031155 | |||
| 241 | Ga0466970_0017095 | |||
| 242 | Ga0495590_0000341 | |||
| 243 | Ga0495650_0004895 | |||
| 244 | Ga0495672_0024578 | |||
| 245 | Ga0496102_0086504 | |||
| 246 | Ga0496117_0000174 | |||
| 247 | Ga0496117_0001948 | |||
| 248 | Ga0496117_0027411 | |||
| 249 | Ga0496117_0124789 | |||
| 250 | Ga0496118_0000281 | |||
| 251 | Ga0496118_0139702 | |||
| 252 | Ga0496120_0001676 | |||
| 253 | Ga0496120_0007867 | |||
| 254 | Ga0496120_0020434 | |||
| 255 | Ga0496120_0112023 | |||
| 256 | Ga0496121_0035143 | |||
| 257 | Ga0496121_0102467 | |||
| 258 | Ga0496122_0001547 | |||
| 259 | Ga0496122_0012003 | |||
| 260 | Ga0496123_0007193 | |||
| 261 | Ga0496123_0112872 | |||
| 262 | Ga0496124_0000323 | |||
| 263 | Ga0496124_0003432 | |||
| 264 | Ga0496124_0192542 | |||
| 265 | Ga0496126_0121068 | |||
| 266 | Ga0501034_0010449 | |||
| 267 | Ga0501034_0145457 | |||
| 268 | Ga0501034_0244149 | |||
| 269 | Ga0501034_0261989 | |||
| 270 | Ga0501043_0106980 | |||
| 271 | Ga0501067_0059963 | |||
| 272 | Ga0501067_0072879 | |||
| 273 | Ga0501070_0027147 | |||
| 274 | Ga0501073_0000063 | |||
| 275 | Ga0501073_0017479 | |||
| 276 | nmdc:mga00v17_125753_c1 | |||
| 277 | nmdc:mga00v17_27710_c1 | |||
| 278 | nmdc:mga0yw44_29321_c1 | |||
| 279 | nmdc:mga0yw44_8883_c1 | |||
| 280 | nmdc:mga0sz30_27108_c1 | |||
| 281 | Ga0500643_000124 | |||
| 282 | Ga0500651_0000264 | |||
| 283 | Ga0500650_0008353 | |||
| 284 | Ga0500556_0000059 | |||
| 285 | Ga0500556_0000133 | |||
| 286 | Ga0500655_000525 | |||
| 287 | Ga0500559_0000202 | |||
| 288 | Ga0500559_0003619 | |||
| 289 | Ga0500559_0004737 | |||
| 290 | Ga0500568_0000007 | |||
| 291 | Ga0500568_0000012 | |||
| 292 | Ga0500573_0000005 | |||
| 293 | Ga0500573_0021648 | |||
| 294 | Ga0500573_0027335 | |||
| 295 | Ga0500573_0036816 | |||
| 296 | Ga0500573_0183859 | |||
| 297 | Ga0500577_0026941 | |||
| 298 | Ga0500577_0076727 | |||
| 299 | Ga0500616_0000010 | |||
| 300 | Ga0500616_0001857 | |||
| 301 | Ga0500620_000019 | |||
| 302 | Ga0500645_007893 | |||
| 303 | 2946025787 | |||
| 304 | 2537901141 | |||
| 305 | 2644197533 | |||
| 306 | 2753300620 | |||
| 307 | 2808877968 | |||
| 308 | 2844853571 | |||
| 309 | 2852644083 | |||
| 310 | 2857733185 | |||
| 311 | 2857734972 | |||
| 312 | 2857739002 | |||
| 313 | 2862993922 | |||
| 314 | 2870625426 | |||
| 315 | 2904431453 | |||
| 316 | 2904502465 | |||
| 317 | 2908677477 | |||
| 318 | 2909075955 | |||
| 319 | 2919041385 | |||
| 320 | 2919045298 | |||
| 321 | 2920879897 | |||
| 322 | 2928107233 | |||
| 323 | 2928121889 | |||
| 324 | 2928503404 | |||
| 325 | 2939660530 | |||
| 326 | 2964328018 | |||
| 327 | 2966922982 | |||
| 328 | 2966926941 | |||
| 329 | 2984552704 | |||
| 330 | 8056040370 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3qqv-assembly1.cif.gz_A-2 | crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium | 0.9136 | 14 | 333 |
| 8f8k-assembly1.cif.gz_A | the structure of rv2173 from m. tuberculosis with ipp bound | 0.8798 | 12 | 331 |
| 3qqv-assembly1.cif.gz_A-2 | crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium | 0.8723 | 14 | 333 |
| 3zmb-assembly1.cif.gz_B | native structure of farnesyl pyrophosphate synthase from pseudomonas aeruginosa pa01, with bound fragment spb02696. | 0.8412 | 6 | 330 |
| 8f8k-assembly1.cif.gz_A | the structure of rv2173 from m. tuberculosis with ipp bound | 0.8407 | 12 | 331 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3qqvA00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9018 | 14 | 333 | 1.10.600.10 |
| af_O53507_1_351_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9 | 14 | 333 | 1.10.600.10 |
| 3qqvA00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8611 | 14 | 333 | 1.10.600.10 |
| af_O53507_1_351_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8596 | 14 | 333 | 1.10.600.10 |
| af_Q58270_13_326_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.8491 | 13 | 334 | 1.10.600.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5R8WGN5-F1-model_v4 | Polyprenyl synthetase family protein | 0.9744 | 17 | 170 |
GO:0004659
GO:0008299 |
| AF-A0A3D9LGR9-F1-model_v4 | Geranylgeranyl diphosphate synthase type II | 0.9713 | 14 | 333 |
GO:0004659
GO:0008299 |
| AF-A0A2W1PS38-F1-model_v4 | deleted | 0.9706 | 17 | 335 |
|
| AF-D1BED9-F1-model_v4 | Geranylgeranyl pyrophosphate synthase | 0.9689 | 16 | 333 |
GO:0004659
GO:0008299 |
| AF-A0A251XZ23-F1-model_v4 | Octaprenyl-diphosphate synthase | 0.9684 | 1 | 278 |
GO:0004311
GO:0016117 GO:0051996 |