F246996

General Info

Members Datasets Scaffolds Average Seq Length
165 115 162 364

Family's Representative Sequence

Representative Sequence 3300048907|Ga0496104_0036158|Ga0496104_0036158_1464_2735
Length 423
Sequence LPQTNPFTHNYISFVMPRGKVFHFVVRATLAAMNVLSARSPPRGWQREILIITCVLVSDFNYFLPEELIAQEPLADRAASRLLHFDRNQPDLHDRQFRDFPNLLRPDDLLVFNNTRVFPARLYGRRSGTKAQPVSPANPASRDFLRGSIEVLLTRQLSQQPNEWECLVRPGRKIGVGERLFFGDQLSSDEAGLQAEVIARGGFGERRIRFLPVPDFFGAVERVGHVPLPPYIGREDQPADRERYQTIYAREKGSVAAPTAGLHFTPEILDRIKARGIETAELTLHVGLGTFQPVREERVEDHKLHRESYSISAQAAAAINRALDEGRRVVAIGTTTVRTLEYAAGTGLSGRPQAGRGEADIFIYPRYQFRVAGALLTNFHLPQSTLLMLVCAFAGKERVLEAYRHAVRERYRFYSYGDCMFLE

Samples

Sample ID Description Type Environment
1 2855730933 Achromobacter sp. HZ28 Isolate Nodule
2 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
3 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
30 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
51 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
77 3300030879 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
80 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
81 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
82 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
83 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
84 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
85 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
86 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
87 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
90 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
91 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
92 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
93 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
94 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
95 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
96 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
97 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
98 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
99 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
100 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
107 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
113 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
114 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
115 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.97
Metatranscriptomes 1.21
Isolates 1.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.42
Nodule 0.61
Rhizoplane 9.7
Rhizosphere 83.64
Stem 0
Stem Tuber 0
Unclassified 3.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJNas_1000327 3300000546 Bacteria 8330
2 Ga0068869_100136654 3300005334 Bacteria 1889
3 Ga0070680_100106538 3300005336 Bacteria 2331
4 Ga0068868_100073776 3300005338 Unclassified 2725
5 Ga0070709_10087224 3300005434 Unclassified 2050
6 Ga0070709_10091143 3300005434 Bacteria 2011
7 Ga0070714_100000654 3300005435 Bacteria 24583
8 Ga0070714_100175030 3300005435 Unclassified 1950
9 Ga0070713_100006786 3300005436 Bacteria 7977
10 Ga0070713_100041605 3300005436 Bacteria 3745
11 Ga0070713_100063047 3300005436 Bacteria 3106
12 Ga0070713_100266529 3300005436 Bacteria 1567
13 Ga0070711_100011952 3300005439 Bacteria 5406
14 Ga0070711_100013938 3300005439 Bacteria 5056
15 Ga0070711_100017129 3300005439 Bacteria 4609
16 Ga0070708_100004231 3300005445 Bacteria 11272
17 Ga0070708_100009074 3300005445 Bacteria 8018
18 Ga0070708_100038007 3300005445 Bacteria 4202
19 Ga0070708_100071731 3300005445 Bacteria 3119
20 Ga0070681_10013278 3300005458 Bacteria 8183
21 Ga0068867_100144025 3300005459 Bacteria 1865
22 Ga0070685_10073924 3300005466 Bacteria 2027
23 Ga0070706_100001481 3300005467 Bacteria 24649
24 Ga0070706_100106709 3300005467 Unclassified 2605
25 Ga0070707_100198133 3300005468 Bacteria 1958
26 Ga0070699_100075721 3300005518 Bacteria 2929
27 Ga0070679_100016098 3300005530 Bacteria 7204
28 Ga0070679_100020650 3300005530 Bacteria 6423
29 Ga0070697_100005852 3300005536 Bacteria 9487
30 Ga0070697_100051126 3300005536 Bacteria 3357
31 Ga0070697_100129374 3300005536 Bacteria 2116
32 Ga0070695_100126464 3300005545 Bacteria 1756
33 Ga0070696_100155938 3300005546 Bacteria 1679
34 Ga0070693_100046043 3300005547 Unclassified 2475
35 Ga0070665_100136954 3300005548 Bacteria 2452
36 Ga0070665_100382036 3300005548 Bacteria 1416
37 Ga0068857_100081630 3300005577 Unclassified 2887
38 Ga0068854_100009800 3300005578 Bacteria 6194
39 Ga0068859_100014235 3300005617 Bacteria 7977
40 Ga0068858_100016125 3300005842 Bacteria 7019
41 Ga0068860_100067962 3300005843 Unclassified 3385
42 Ga0070717_10000654 3300006028 Bacteria 22239
43 Ga0070717_10005124 3300006028 Bacteria 9555
44 Ga0070717_10011679 3300006028 Bacteria 6678
45 Ga0070717_10327452 3300006028 Bacteria 1366
46 Ga0070715_10067678 3300006163 Unclassified 1586
47 Ga0070712_100002386 3300006175 Bacteria 11564
48 Ga0070712_100111294 3300006175 Bacteria 2044
49 Ga0070712_100160191 3300006175 Bacteria 1737
50 Ga0070712_100201733 3300006175 Unclassified 1563
51 Ga0097621_100181537 3300006237 Unclassified 1818
52 Ga0068871_100019103 3300006358 Bacteria 5227
53 Ga0068871_100030033 3300006358 Unclassified 4276
54 Ga0075434_100004944 3300006871 Bacteria 12086
55 Ga0075434_100010007 3300006871 Bacteria 8876
56 Ga0097620_100014235 3300006931 Bacteria 7977
57 Ga0075435_100039805 3300007076 Bacteria 3752
58 Ga0105250_10000031 3300009092 Bacteria 170328
59 Ga0105240_10123526 3300009093 Unclassified 3114
60 Ga0105241_10015727 3300009174 Bacteria 5544
61 Ga0105241_10051862 3300009174 Unclassified 3130
62 Ga0105237_10084268 3300009545 Unclassified 3169
63 Ga0105239_10117092 3300010375 Unclassified 2957
64 Ga0105239_10137827 3300010375 Unclassified 2717
65 Ga0157369_10038573 3300013105 Bacteria 5224
66 Ga0157369_10041352 3300013105 Bacteria 5031
67 Ga0157374_10003147 3300013296 Bacteria 13870
68 Ga0157374_10035065 3300013296 Unclassified 4589
69 Ga0157378_10064848 3300013297 Unclassified 3268
70 Ga0157378_10156338 3300013297 Unclassified 2129
71 Ga0163162_10005030 3300013306 Bacteria 12737
72 Ga0163162_10033702 3300013306 Bacteria 5090
73 Ga0163162_10422313 3300013306 Bacteria 1465
74 Ga0157372_10132522 3300013307 Bacteria 2869
75 Ga0157372_10222016 3300013307 Bacteria 2190
76 Ga0157375_10016139 3300013308 Bacteria 6699
77 Ga0157379_10003223 3300014968 Bacteria 13827
78 Ga0157376_10008189 3300014969 Bacteria 7524
79 Ga0157376_10109184 3300014969 Unclassified 2432
80 Ga0182007_10007072 3300015262 Unclassified 4752
81 Ga0209676_1004048 3300025292 Bacteria 8431
82 Ga0209050_1005675 3300025298 Bacteria 7718
83 Ga0209051_1034443 3300025303 Bacteria 1898
84 Ga0207656_10009157 3300025321 Unclassified 3671
85 Ga0207696_1000125 3300025711 Bacteria 138603
86 Ga0207647_10004272 3300025904 Bacteria 10594
87 Ga0207685_10002253 3300025905 Unclassified 4373
88 Ga0207699_10043023 3300025906 Bacteria 2621
89 Ga0207684_10036617 3300025910 Bacteria 4164
90 Ga0207684_10162129 3300025910 Unclassified 1926
91 Ga0207654_10009222 3300025911 Bacteria 5003
92 Ga0207654_10022442 3300025911 Unclassified 3368
93 Ga0207695_10006402 3300025913 Bacteria 15296
94 Ga0207693_10000013 3300025915 Bacteria 154365
95 Ga0207693_10034527 3300025915 Bacteria 3989
96 Ga0207693_10131245 3300025915 Bacteria 1969
97 Ga0207663_10025294 3300025916 Unclassified 3429
98 Ga0207660_10023339 3300025917 Bacteria 4176
99 Ga0207657_10012664 3300025919 Bacteria 8313
100 Ga0207646_10157149 3300025922 Bacteria 2051
101 Ga0207650_10149292 3300025925 Bacteria 1843
102 Ga0207700_10014787 3300025928 Bacteria 5125
103 Ga0207700_10024734 3300025928 Bacteria 4160
104 Ga0207700_10175649 3300025928 Bacteria 1790
105 Ga0207664_10018975 3300025929 Bacteria 5074
106 Ga0207706_10064089 3300025933 Unclassified 3236
107 Ga0207665_10020931 3300025939 Bacteria 4299
108 Ga0207665_10024827 3300025939 Unclassified 3954
109 Ga0207665_10125019 3300025939 Bacteria 1820
110 Ga0207689_10005184 3300025942 Bacteria 11701
111 Ga0207689_10139912 3300025942 Bacteria 1994
112 Ga0207702_10005623 3300026078 Bacteria 10934
113 Ga0207648_10309501 3300026089 Bacteria 1418
114 Ga0207674_10255894 3300026116 Bacteria 1698
115 Ga0265338_10026149 3300028800 Bacteria 5897
116 Ga0265765_1001022 3300030879 Unclassified 2480
117 Ga0265760_10001349 3300031090 Bacteria 7203
118 Ga0265325_10011474 3300031241 Bacteria 5088
119 Ga0265339_10034639 3300031249 Unclassified 2836
120 Ga0265339_10051639 3300031249 Bacteria 2243
121 Ga0265327_10076535 3300031251 Bacteria 1663
122 Ga0265316_10050860 3300031344 Bacteria 3258
123 Ga0307509_10000455 3300031507 Bacteria 69145
124 Ga0265314_10037629 3300031711 Bacteria 3504
125 Ga0373923_0052715 3300035111 Bacteria 1710
126 Ga0373953_0048352 3300035117 Unclassified 1713
127 Ga0373927_0086099 3300035695 Unclassified 2040
128 Ga0373925_0185243 3300037068 Bacteria 1650
129 Ga0436363_0816158 3300039450 Bacteria 10039
130 Ga0436362_0206106 3300039453 Bacteria 8541
131 Ga0439436_0020864 3300041404 Bacteria 1950
132 Ga0451835_1217585 3300041492 Bacteria 1472
133 Ga0451841_0162128 3300041498 Bacteria 3252
134 Ga0451851_0905481 3300041507 Bacteria 1122
135 Ga0466963_0021439 3300044694 Bacteria 4076
136 Ga0466964_0106793 3300044706 Bacteria 1243
137 Ga0451576_0014607 3300045051 Bacteria 8729
138 Ga0451576_0050475 3300045051 Bacteria 4362
139 Ga0495580_0000050 3300046472 Bacteria 68142
140 Ga0495580_0029552 3300046472 Bacteria 3976
141 Ga0495580_0181292 3300046472 Bacteria 1454
142 Ga0495665_0061596 3300046531 Bacteria 1981
143 Ga0496100_0003740 3300048903 Bacteria 7966
144 Ga0496102_0006625 3300048905 Bacteria 9898
145 Ga0496102_0149486 3300048905 Unclassified 2194
146 Ga0496103_0016093 3300048906 Bacteria 4462
147 Ga0496104_0036158 3300048907 Bacteria 4615
148 Ga0496104_0155899 3300048907 Bacteria 2191
149 Ga0496105_0137301 3300048908 Unclassified 2014
150 Ga0496106_0028272 3300048909 Bacteria 4176
151 Ga0496107_0084179 3300048910 Unclassified 2320
152 Ga0496108_0230308 3300048911 Bacteria 1611
153 Ga0496112_0058109 3300048915 Unclassified 3809
154 Ga0496112_0101983 3300048915 Unclassified 2839
155 Ga0496112_0118390 3300048915 Bacteria 2619
156 Ga0496112_0119267 3300048915 Bacteria 2608
157 Ga0496114_0037566 3300048917 Unclassified 4005
158 Ga0496115_0197217 3300048918 Unclassified 1663
159 Ga0501083_0016772 3300049744 Bacteria 5116
160 nmdc:mga0n895_18347_c1 3300050512 Bacteria 6471
161 nmdc:mga0rr50_7707_c1 3300050513 Bacteria 6667
162 Ga0500642_0108881 3300053130 Bacteria 1293

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041498 Ga0451841_0162128 Ga0451841_0162128_2288_3232 309
2 3300006871 Ga0075434_100004944 Ga0075434_10000494411 315
3 3300025292 Ga0209676_1004048 Ga0209676_10040485 327
4 3300025298 Ga0209050_1005675 Ga0209050_10056756 327
5 3300025303 Ga0209051_1034443 Ga0209051_10344432 327
6 3300005530 Ga0070679_100020650 Ga0070679_1000206502 333
7 3300026078 Ga0207702_10005623 Ga0207702_1000562310 333
8 3300006028 Ga0070717_10005124 Ga0070717_100051245 335
9 3300045051 Ga0451576_0014607 Ga0451576_0014607_5923_7020 335
10 3300009092 Ga0105250_10000031 Ga0105250_1000003174 336
11 3300014968 Ga0157379_10003223 Ga0157379_100032238 336
12 3300025711 Ga0207696_1000125 Ga0207696_100012540 336
13 3300031507 Ga0307509_10000455 Ga0307509_1000045528 336
14 3300041404 Ga0439436_0020864 Ga0439436_0020864_703_1740 336
15 3300041492 Ga0451835_1217585 Ga0451835_1217585_225_1250 336
16 3300041507 Ga0451851_0905481 Ga0451851_0905481_56_1081 336
17 3300045051 Ga0451576_0050475 Ga0451576_0050475_1549_2646 336
18 3300053130 Ga0500642_0108881 Ga0500642_0108881_192_1220 336
19 iso_pu_bacteria 2881412998 2881418028 336
20 iso_pu_bacteria 8055225921 8055227351 336
21 iso_pu_bacteria 2855730933 2855734787 337
22 3300013306 Ga0163162_10422313 Ga0163162_104223132 338
23 3300005548 Ga0070665_100136954 Ga0070665_1001369542 339
24 3300046472 Ga0495580_0181292 Ga0495580_0181292_134_1267 346
25 3300005435 Ga0070714_100000654 Ga0070714_1000006547 351
26 3300005436 Ga0070713_100006786 Ga0070713_1000067865 351
27 3300005439 Ga0070711_100011952 Ga0070711_1000119523 351
28 3300025928 Ga0207700_10014787 Ga0207700_100147874 351
29 3300025929 Ga0207664_10018975 Ga0207664_100189753 351
30 3300031344 Ga0265316_10050860 Ga0265316_100508602 359
31 3300031711 Ga0265314_10037629 Ga0265314_100376291 359
32 3300005338 Ga0068868_100073776 Ga0068868_1000737762 360
33 3300005466 Ga0070685_10073924 Ga0070685_100739242 360
34 3300005548 Ga0070665_100382036 Ga0070665_1003820362 360
35 3300005617 Ga0068859_100014235 Ga0068859_1000142353 360
36 3300005842 Ga0068858_100016125 Ga0068858_1000161253 360
37 3300005843 Ga0068860_100067962 Ga0068860_1000679623 360
38 3300006028 Ga0070717_10000654 Ga0070717_100006546 360
39 3300006237 Ga0097621_100181537 Ga0097621_1001815371 360
40 3300006931 Ga0097620_100014235 Ga0097620_1000142353 360
41 3300009545 Ga0105237_10084268 Ga0105237_100842681 360
42 3300013296 Ga0157374_10003147 Ga0157374_100031475 360
43 3300013308 Ga0157375_10016139 Ga0157375_100161393 360
44 3300014969 Ga0157376_10008189 Ga0157376_100081894 360
45 3300025904 Ga0207647_10004272 Ga0207647_100042724 360
46 3300025942 Ga0207689_10005184 Ga0207689_100051846 360
47 3300048915 Ga0496112_0119267 Ga0496112_0119267_1480_2565 360
48 3300006028 Ga0070717_10327452 Ga0070717_103274521 361
49 3300039450 Ga0436363_0816158 Ga0436363_0816158_6726_7823 361
50 3300044706 Ga0466964_0106793 Ga0466964_0106793_66_1151 361
51 3300005334 Ga0068869_100136654 Ga0068869_1001366542 362
52 3300005434 Ga0070709_10087224 Ga0070709_100872242 362
53 3300005435 Ga0070714_100175030 Ga0070714_1001750302 362
54 3300005436 Ga0070713_100041605 Ga0070713_1000416053 362
55 3300005439 Ga0070711_100017129 Ga0070711_1000171293 362
56 3300005445 Ga0070708_100004231 Ga0070708_1000042316 362
57 3300005445 Ga0070708_100071731 Ga0070708_1000717312 362
58 3300005459 Ga0068867_100144025 Ga0068867_1001440252 362
59 3300005467 Ga0070706_100001481 Ga0070706_1000014814 362
60 3300005536 Ga0070697_100005852 Ga0070697_1000058525 362
61 3300005536 Ga0070697_100129374 Ga0070697_1001293741 362
62 3300005545 Ga0070695_100126464 Ga0070695_1001264641 362
63 3300005546 Ga0070696_100155938 Ga0070696_1001559381 362
64 3300005547 Ga0070693_100046043 Ga0070693_1000460433 362
65 3300005578 Ga0068854_100009800 Ga0068854_1000098004 362
66 3300006163 Ga0070715_10067678 Ga0070715_100676782 362
67 3300006175 Ga0070712_100201733 Ga0070712_1002017332 362
68 3300006358 Ga0068871_100019103 Ga0068871_1000191034 362
69 3300006358 Ga0068871_100030033 Ga0068871_1000300333 362
70 3300006871 Ga0075434_100010007 Ga0075434_1000100077 362
71 3300007076 Ga0075435_100039805 Ga0075435_1000398053 362
72 3300009093 Ga0105240_10123526 Ga0105240_101235262 362
73 3300009174 Ga0105241_10015727 Ga0105241_100157273 362
74 3300009174 Ga0105241_10051862 Ga0105241_100518624 362
75 3300010375 Ga0105239_10117092 Ga0105239_101170922 362
76 3300010375 Ga0105239_10137827 Ga0105239_101378272 362
77 3300013105 Ga0157369_10038573 Ga0157369_100385732 362
78 3300013105 Ga0157369_10041352 Ga0157369_100413523 362
79 3300013296 Ga0157374_10035065 Ga0157374_100350653 362
80 3300013297 Ga0157378_10064848 Ga0157378_100648482 362
81 3300013297 Ga0157378_10156338 Ga0157378_101563382 362
82 3300013306 Ga0163162_10005030 Ga0163162_100050303 362
83 3300013306 Ga0163162_10033702 Ga0163162_100337021 362
84 3300013307 Ga0157372_10132522 Ga0157372_101325222 362
85 3300014969 Ga0157376_10109184 Ga0157376_101091843 362
86 3300015262 Ga0182007_10007072 Ga0182007_100070722 362
87 3300025321 Ga0207656_10009157 Ga0207656_100091573 362
88 3300025910 Ga0207684_10036617 Ga0207684_100366173 362
89 3300025911 Ga0207654_10009222 Ga0207654_100092223 362
90 3300025911 Ga0207654_10022442 Ga0207654_100224423 362
91 3300025913 Ga0207695_10006402 Ga0207695_1000640214 362
92 3300025919 Ga0207657_10012664 Ga0207657_100126644 362
93 3300025925 Ga0207650_10149292 Ga0207650_101492922 362
94 3300025928 Ga0207700_10024734 Ga0207700_100247343 362
95 3300025933 Ga0207706_10064089 Ga0207706_100640892 362
96 3300025939 Ga0207665_10125019 Ga0207665_101250192 362
97 3300025942 Ga0207689_10139912 Ga0207689_101399122 362
98 3300026089 Ga0207648_10309501 Ga0207648_103095012 362
99 3300028800 Ga0265338_10026149 Ga0265338_100261493 362
100 3300031241 Ga0265325_10011474 Ga0265325_100114742 362
101 3300031249 Ga0265339_10034639 Ga0265339_100346392 362
102 3300035111 Ga0373923_0052715 Ga0373923_0052715_403_1560 362
103 3300035695 Ga0373927_0086099 Ga0373927_0086099_481_1569 362
104 3300037068 Ga0373925_0185243 Ga0373925_0185243_66_1166 362
105 3300039453 Ga0436362_0206106 Ga0436362_0206106_7161_8249 362
106 3300044694 Ga0466963_0021439 Ga0466963_0021439_1290_2417 362
107 3300046472 Ga0495580_0000050 Ga0495580_0000050_993_2093 362
108 3300046531 Ga0495665_0061596 Ga0495665_0061596_543_1643 362
109 3300048903 Ga0496100_0003740 Ga0496100_0003740_3241_4329 362
110 3300048905 Ga0496102_0006625 Ga0496102_0006625_4904_5992 362
111 3300048905 Ga0496102_0149486 Ga0496102_0149486_797_1885 362
112 3300048906 Ga0496103_0016093 Ga0496103_0016093_2207_3295 362
113 3300048908 Ga0496105_0137301 Ga0496105_0137301_680_1768 362
114 3300048909 Ga0496106_0028272 Ga0496106_0028272_2067_3155 362
115 3300048910 Ga0496107_0084179 Ga0496107_0084179_775_1863 362
116 3300048911 Ga0496108_0230308 Ga0496108_0230308_482_1570 362
117 3300048915 Ga0496112_0058109 Ga0496112_0058109_1790_2878 362
118 3300048915 Ga0496112_0101983 Ga0496112_0101983_1569_2690 362
119 3300048917 Ga0496114_0037566 Ga0496114_0037566_1806_2894 362
120 3300048918 Ga0496115_0197217 Ga0496115_0197217_400_1488 362
121 3300049744 Ga0501083_0016772 Ga0501083_0016772_2143_3231 362
122 3300050512 nmdc:mga0n895_18347_c1 nmdc:mga0n895_18347_c1_4400_5521 362
123 3300050513 nmdc:mga0rr50_7707_c1 nmdc:mga0rr50_7707_c1_1600_2721 362
124 3300000546 LJNas_1000327 LJNas_10003279 363
125 3300005336 Ga0070680_100106538 Ga0070680_1001065382 363
126 3300005434 Ga0070709_10091143 Ga0070709_100911432 363
127 3300005436 Ga0070713_100063047 Ga0070713_1000630473 363
128 3300005436 Ga0070713_100266529 Ga0070713_1002665291 363
129 3300005439 Ga0070711_100013938 Ga0070711_1000139383 363
130 3300005445 Ga0070708_100009074 Ga0070708_1000090747 363
131 3300005445 Ga0070708_100038007 Ga0070708_1000380073 363
132 3300005458 Ga0070681_10013278 Ga0070681_100132783 363
133 3300005467 Ga0070706_100106709 Ga0070706_1001067092 363
134 3300005468 Ga0070707_100198133 Ga0070707_1001981331 363
135 3300005518 Ga0070699_100075721 Ga0070699_1000757212 363
136 3300005530 Ga0070679_100016098 Ga0070679_1000160985 363
137 3300005536 Ga0070697_100051126 Ga0070697_1000511262 363
138 3300005577 Ga0068857_100081630 Ga0068857_1000816302 363
139 3300006028 Ga0070717_10011679 Ga0070717_100116795 363
140 3300006175 Ga0070712_100002386 Ga0070712_10000238610 363
141 3300006175 Ga0070712_100111294 Ga0070712_1001112942 363
142 3300006175 Ga0070712_100160191 Ga0070712_1001601912 363
143 3300013307 Ga0157372_10222016 Ga0157372_102220162 363
144 3300025905 Ga0207685_10002253 Ga0207685_100022533 363
145 3300025906 Ga0207699_10043023 Ga0207699_100430233 363
146 3300025910 Ga0207684_10162129 Ga0207684_101621292 363
147 3300025915 Ga0207693_10000013 Ga0207693_1000001335 363
148 3300025915 Ga0207693_10034527 Ga0207693_100345273 363
149 3300025915 Ga0207693_10131245 Ga0207693_101312452 363
150 3300025916 Ga0207663_10025294 Ga0207663_100252943 363
151 3300025917 Ga0207660_10023339 Ga0207660_100233392 363
152 3300025922 Ga0207646_10157149 Ga0207646_101571492 363
153 3300025928 Ga0207700_10175649 Ga0207700_101756492 363
154 3300025939 Ga0207665_10020931 Ga0207665_100209313 363
155 3300025939 Ga0207665_10024827 Ga0207665_100248273 363
156 3300026116 Ga0207674_10255894 Ga0207674_102558941 363
157 3300030879 Ga0265765_1001022 Ga0265765_10010222 363
158 3300031090 Ga0265760_10001349 Ga0265760_100013493 363
159 3300031249 Ga0265339_10051639 Ga0265339_100516392 363
160 3300031251 Ga0265327_10076535 Ga0265327_100765352 363
161 3300035117 Ga0373953_0048352 Ga0373953_0048352_44_1198 363
162 3300046472 Ga0495580_0029552 Ga0495580_0029552_256_1359 363
163 3300048907 Ga0496104_0036158 Ga0496104_0036158_1464_2735 363
164 3300048907 Ga0496104_0155899 Ga0496104_0155899_923_2020 363
165 3300048915 Ga0496112_0118390 Ga0496112_0118390_1062_2159 363

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02547

Queuosine_synth

Queuosine biosynthesis protein

57

422

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4q4l-assembly1.cif.gz_A crystal structure of an atp synthase subunit beta 1 (f1-b1) from burkholderia thailandensis 0.8579 95 154
6oqr-assembly1.cif.gz_D e. coli atp synthase adp state 1a 0.7794 109 156
3oaa-assembly4.cif.gz_b structure of the e.coli f1-atp synthase inhibited by subunit epsilon 0.7711 109 156
6foc-assembly1.cif.gz_D f1-atpase from mycobacterium smegmatis 0.7626 99 155
6foc-assembly1.cif.gz_F f1-atpase from mycobacterium smegmatis 0.7626 99 155
ID Description Score Start End Superfamily
1vkyA01 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9149 4 363 3.40.1780.10
1vkyA01 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9106 4 363 3.40.1780.10
af_P0A7F9_64_163_3.40.1780.10 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.8739 65 182 3.40.1780.10
4q4lA01 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.8579 95 154 2.40.10.170
af_P0A7F9_64_163_3.40.1780.10 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.85 65 182 3.40.1780.10
ID Description Score Start End GO Terms
AF-A0A359M823-F1-model_v4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.9902 202 363 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A0U2JFI9-F1-model_v4 Queuosine biosynthesis protein 0.9866 268 363 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A353DBH3-F1-model_v4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.9851 251 363 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A3M1RX12-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.9849 194 363 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A424SNB6-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.9846 221 363 GO:0002099
GO:0005737
GO:0008616
GO:0051075

Feature Viewer

pLDDT pTM Quality
85.68 0.83 High
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Predicted Structure (AlphaFold2)

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