F246276

General Info

Members Datasets Scaffolds Average Seq Length
165 108 142 413

Family's Representative Sequence

Representative Sequence 3300025303|Ga0209051_1029595|Ga0209051_10295952
Length 431
Sequence VLYAYMSQFLIFPANFMTGMIETKVCIIGAGPGGATAALQLVQLGIDCVVVDKAVFPRDKVCGDGLSGKVLTALEAIDKGVAERLRQYAQKLGSWGVTFVSPGRVAMEVAYKPNYDRQVDEPAGFVCKRIHFDNFLVDELKRRPEIRLFEGIAIDKYELQEDGYLVTDTTGNFSVKAQLLIVANGAHSSFTKEVANIRMEPAYYAAGVRAYYKNVTGTHADNFIELHFLKPLLPGYLWIFPLPNGEANVGMDMISEAVRSRKVNLKKLLTETLENDPVFKERFRNAEMTSSIEGYGLPLGSKKRKLSGDRYMLVGDAAYLVDPFTGEGIGNALYAGRLAAQQAAAALEANDLSAAGLAPYDENVYRVLGPELQLSHRLQKLVKYPWLFNLLMKMGTRNKQLKELISCMFYEVDLRKKLARPSFYIKLLLNK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
4 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
5 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
6 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
7 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
8 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
9 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
10 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
11 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
12 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
13 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
14 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
15 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
16 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
17 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
18 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
19 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
20 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
21 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
22 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
23 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
24 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
25 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
26 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
27 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
28 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
29 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
30 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
31 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
34 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
36 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
50 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
53 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
54 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
61 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
69 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
72 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
73 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
74 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
75 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
76 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
77 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
78 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
79 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
86 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
87 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
88 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
90 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
93 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
94 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
95 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
96 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
97 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
98 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
99 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
100 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
101 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
102 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
103 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
104 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
105 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
106 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
107 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
108 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.06
Metatranscriptomes 0
Isolates 13.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 38.18
Nodule 0
Rhizoplane 0
Rhizosphere 36.36
Stem 0
Stem Tuber 0
Unclassified 25.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1875796 2162886007 Unclassified 2468
2 JGI24740J21852_10000655 3300001979 Bacteria 14950
3 JGI24739J22299_10000559 3300001989 Bacteria 13370
4 JGI24739J22299_10001770 3300001989 Bacteria 8219
5 JGI25154J39366_1000023 3300002738 Bacteria 219569
6 JGI25154J39366_1000041 3300002738 Bacteria 144221
7 JGI25157J39369_1003039 3300002741 Bacteria 3646
8 JGI25153J46596_10003607 3300003215 Bacteria 8591
9 rootH1_10132177 3300003316 Bacteria 6344
10 rootH2_10078441 3300003320 Bacteria 11723
11 rootH2_10149900 3300003320 Bacteria 2643
12 rootL2_10025672 3300003322 Bacteria 9188
13 rootL2_10025674 3300003322 Bacteria 8042
14 rootL2_10245398 3300003322 Bacteria 4305
15 rootH1_10011868 3300003323 Bacteria 18970
16 rootH1_10012890 3300003323 Bacteria 33300
17 rootH1_10024659 3300003323 Bacteria 5272
18 rootH1_10031833 3300003323 Bacteria 9754
19 rootH1_10105587 3300003323 Bacteria 2913
20 rootH1_10119321 3300003323 Bacteria 2484
21 rootH1_10191834 3300003323 Bacteria 10571
22 rootH1_10208777 3300003323 Bacteria 6913
23 JGI25160J50197_1000961 3300003354 Bacteria 15091
24 JGI25160J50197_1001406 3300003354 Bacteria 12071
25 JGI25160J50197_1006729 3300003354 Bacteria 4613
26 JGI25160J50197_1015340 3300003354 Bacteria 2519
27 Ga0055526_1007095 3300003771 Bacteria 5915
28 Ga0055526_1009583 3300003771 Unclassified 4634
29 Ga0055528_1000177 3300003790 Bacteria 53906
30 Ga0055528_1000327 3300003790 Bacteria 39958
31 Ga0055530_10000118 3300003791 Bacteria 68596
32 Ga0055530_10002240 3300003791 Bacteria 12734
33 Ga0055531_10000054 3300003794 Bacteria 123684
34 Ga0055531_10013993 3300003794 Bacteria 3651
35 Ga0055531_10028717 3300003794 Bacteria 1911
36 Ga0065165_1000022 3300005262 Bacteria 253404
37 Ga0065165_1000027 3300005262 Bacteria 228507
38 Ga0065165_1003435 3300005262 Bacteria 11138
39 Ga0065165_1024056 3300005262 Bacteria 2054
40 Ga0065714_10074092 3300005288 Bacteria 3084
41 Ga0065704_10070892 3300005289 Bacteria 14935
42 Ga0065704_10076641 3300005289 Bacteria 5039
43 Ga0070672_100200374 3300005543 Bacteria 1669
44 Ga0097621_100021855 3300006237 Bacteria 4958
45 Ga0075428_100020803 3300006844 Bacteria 7264
46 Ga0105240_10000020 3300009093 Bacteria 399699
47 Ga0111539_10009973 3300009094 Bacteria 11974
48 Ga0111539_10237983 3300009094 Unclassified 2119
49 Ga0105242_10059809 3300009176 Bacteria 3127
50 Ga0105239_10184576 3300010375 Bacteria 2334
51 Ga0157378_10194343 3300013297 Bacteria 1916
52 Ga0163162_10070713 3300013306 Bacteria 3541
53 Ga0157372_10176329 3300013307 Unclassified 2474
54 Ga0157372_10305534 3300013307 Bacteria 1851
55 Ga0157375_10092395 3300013308 Unclassified 3090
56 Ga0163163_10226972 3300014325 Bacteria 1916
57 Ga0157380_10002401 3300014326 Bacteria 12598
58 Ga0182005_1000043 3300015265 Bacteria 140285
59 Ga0209436_100378 3300025208 Bacteria 20060
60 Ga0209436_100778 3300025208 Bacteria 13214
61 Ga0209258_100302 3300025242 Bacteria 79794
62 Ga0209646_1000004 3300025246 Bacteria 786587
63 Ga0209646_1000122 3300025246 Bacteria 144486
64 Ga0209646_1003420 3300025246 Bacteria 3139
65 Ga0209026_1000095 3300025250 Bacteria 164309
66 Ga0209026_1000329 3300025250 Bacteria 47539
67 Ga0209148_1000131 3300025254 Bacteria 174079
68 Ga0209673_1000078 3300025273 Bacteria 227727
69 Ga0209673_1000287 3300025273 Bacteria 94132
70 Ga0209130_1000679 3300025284 Bacteria 30691
71 Ga0209130_1022859 3300025284 Bacteria 1388
72 Ga0209564_1002562 3300025295 Bacteria 13980
73 Ga0209564_1003909 3300025295 Bacteria 9547
74 Ga0209564_1006314 3300025295 Bacteria 6445
75 Ga0209758_1003272 3300025297 Bacteria 15020
76 Ga0209758_1003999 3300025297 Bacteria 12761
77 Ga0209758_1006817 3300025297 Bacteria 8011
78 Ga0209758_1012838 3300025297 Unclassified 4640
79 Ga0209050_1000097 3300025298 Bacteria 239919
80 Ga0209050_1001109 3300025298 Bacteria 32601
81 Ga0207426_1000033 3300025302 Bacteria 455976
82 Ga0207426_1000456 3300025302 Bacteria 64765
83 Ga0207426_1000530 3300025302 Bacteria 55033
84 Ga0207426_1002202 3300025302 Bacteria 13112
85 Ga0209051_1011003 3300025303 Bacteria 4510
86 Ga0209051_1029595 3300025303 Bacteria 2140
87 Ga0209257_1000070 3300025304 Bacteria 336454
88 Ga0209257_1001571 3300025304 Bacteria 26354
89 Ga0209257_1001992 3300025304 Bacteria 21936
90 Ga0207674_10098041 3300026116 Bacteria 2915
91 Ga0207428_10049395 3300027907 Bacteria 3371
92 Ga0307515_10000001 3300028794 Bacteria 4259510
93 Ga0265327_10000055 3300031251 Bacteria 247188
94 Ga0265327_10000714 3300031251 Bacteria 52495
95 Ga0265327_10002935 3300031251 Bacteria 17056
96 Ga0316584_0038438 3300036712 Bacteria 3560
97 Ga0439431_0000069 3300041997 Bacteria 16446
98 Ga0439445_0000674 3300042004 Bacteria 7076
99 Ga0466972_0000066 3300044658 Bacteria 103012
100 Ga0466972_0054636 3300044658 Bacteria 1921
101 Ga0466965_0051590 3300044683 Unclassified 2041
102 Ga0453684_0015856 3300044712 Bacteria 11846
103 Ga0466959_0010924 3300045049 Bacteria 6511
104 Ga0495627_008642 3300046453 Bacteria 3799
105 Ga0495638_0098211 3300046460 Bacteria 1755
106 Ga0495633_0000133 3300046558 Bacteria 100207
107 Ga0495668_0000423 3300046616 Bacteria 55097
108 Ga0495625_0143283 3300046660 Bacteria 1611
109 Ga0495636_0000312 3300047318 Bacteria 18829
110 Ga0495686_0000265 3300047472 Bacteria 93838
111 Ga0496121_0000081 3300048924 Bacteria 229506
112 Ga0496126_0004402 3300048929 Bacteria 16878
113 Ga0501034_0275331 3300049571 Bacteria 1623
114 Ga0501047_0049877 3300049581 Bacteria 4042
115 Ga0501047_0089130 3300049581 Bacteria 2962
116 Ga0501219_000840 3300049703 Bacteria 3926
117 Ga0501225_0004424 3300049705 Bacteria 4184
118 Ga0501269_003376 3300049766 Bacteria 1933
119 Ga0501035_0129983 3300049822 Bacteria 2196
120 Ga0501044_0096185 3300049823 Bacteria 2983
121 Ga0501044_0130706 3300049823 Bacteria 2505
122 Ga0501284_00031 3300050005 Bacteria 67688
123 nmdc:mga08y16_156788_c1 3300050511 Bacteria 2366
124 Ga0500578_0000074 3300053086 Bacteria 109442
125 Ga0500578_0000245 3300053086 Bacteria 67264
126 Ga0500578_0074542 3300053086 Bacteria 2162
127 Ga0500644_0000026 3300053088 Bacteria 93328
128 Ga0500646_0002629 3300053090 Bacteria 4650
129 Ga0500583_0002366 3300053092 Bacteria 5649
130 Ga0500651_0015149 3300053093 Bacteria 4727
131 Ga0500569_000333 3300053109 Bacteria 7539
132 Ga0500652_014538 3300053131 Bacteria 2817
133 Ga0500658_0002988 3300053134 Bacteria 6491
134 Ga0500559_0021276 3300053136 Bacteria 2748
135 Ga0500577_0000168 3300053142 Bacteria 16566
136 Ga0500589_021862 3300053147 Bacteria 2938
137 Ga0500616_0003096 3300053153 Bacteria 13042
138 Ga0500616_0004864 3300053153 Bacteria 9358
139 Ga0500622_0000157 3300053156 Bacteria 71381
140 Ga0500627_0001811 3300053158 Bacteria 6091
141 Ga0500633_0000092 3300053160 Bacteria 12594
142 Ga0500634_0018551 3300053161 Bacteria 3739

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046660 Ga0495625_0143283 Ga0495625_0143283_26_1096 356
2 3300006237 Ga0097621_100021855 Ga0097621_1000218552 361
3 3300050511 nmdc:mga08y16_156788_c1 nmdc:mga08y16_156788_c1_1154_2314 386
4 3300047472 Ga0495686_0000265 Ga0495686_0000265_64725_65978 392
5 3300036712 Ga0316584_0038438 Ga0316584_0038438_831_2066 400
6 3300003323 rootH1_10105587 rootH1_101055872 401
7 iso_pu_bacteria 2818991460 2819676809 403
8 iso_pu_bacteria 2884791551 2884796662 403
9 iso_pu_bacteria 2929177148 2929177818 403
10 iso_pu_bacteria 2945977869 2945980166 403
11 iso_pu_bacteria 2946013367 2946013972 403
12 iso_pu_bacteria 2738541278 2738729671 404
13 iso_pu_bacteria 2739367866 2740033640 404
14 iso_pu_bacteria 2818991442 2819574873 404
15 iso_pu_bacteria 2821136567 2821140972 404
16 iso_pu_bacteria 2840677318 2840678896 404
17 iso_pu_bacteria 2883068021 2883069068 404
18 iso_pu_bacteria 2896085136 2896086712 404
19 iso_pu_bacteria 2896109856 2896112957 404
20 iso_pu_bacteria 2904467357 2904471472 404
21 iso_pu_bacteria 2929154850 2929156211 404
22 iso_pu_bacteria 2929239360 2929240176 404
23 iso_pu_bacteria 2929921140 2929921887 404
24 iso_pu_bacteria 8003151029 8003154046 404
25 3300013308 Ga0157375_10092395 Ga0157375_100923954 405
26 iso_pu_bacteria 2883068021 2883068055 405
27 iso_pu_bacteria 2896085136 2896089463 405
28 3300005543 Ga0070672_100200374 Ga0070672_1002003741 406
29 3300006844 Ga0075428_100020803 Ga0075428_1000208034 406
30 3300009094 Ga0111539_10009973 Ga0111539_100099739 406
31 3300014326 Ga0157380_10002401 Ga0157380_100024012 406
32 3300027907 Ga0207428_10049395 Ga0207428_100493952 406
33 iso_pu_bacteria 2929921140 2929925289 406
34 iso_pu_bacteria 8003151029 8003154215 406
35 3300003316 rootH1_10132177 rootH1_101321773 407
36 3300003320 rootH2_10078441 rootH2_100784417 407
37 3300003322 rootL2_10025672 rootL2_100256728 407
38 3300003322 rootL2_10025674 rootL2_100256743 407
39 3300003322 rootL2_10245398 rootL2_102453983 407
40 3300003323 rootH1_10012890 rootH1_100128909 407
41 3300003323 rootH1_10031833 rootH1_100318333 407
42 3300003323 rootH1_10191834 rootH1_101918345 407
43 3300003354 JGI25160J50197_1015340 JGI25160J50197_10153401 407
44 3300003794 Ga0055531_10000054 Ga0055531_1000005426 407
45 3300010375 Ga0105239_10184576 Ga0105239_101845762 407
46 3300025208 Ga0209436_100378 Ga0209436_10037813 407
47 3300025284 Ga0209130_1000679 Ga0209130_100067911 407
48 3300025302 Ga0207426_1000033 Ga0207426_100003351 407
49 3300025304 Ga0209257_1000070 Ga0209257_100007083 407
50 3300026116 Ga0207674_10098041 Ga0207674_100980412 407
51 3300031251 Ga0265327_10002935 Ga0265327_100029353 407
52 3300045049 Ga0466959_0010924 Ga0466959_0010924_4703_5938 407
53 3300046453 Ga0495627_008642 Ga0495627_008642_2519_3766 407
54 3300046558 Ga0495633_0000133 Ga0495633_0000133_10978_12225 407
55 3300048924 Ga0496121_0000081 Ga0496121_0000081_16152_17399 407
56 3300048929 Ga0496126_0004402 Ga0496126_0004402_4247_5494 407
57 3300053093 Ga0500651_0015149 Ga0500651_0015149_1663_2910 407
58 3300053156 Ga0500622_0000157 Ga0500622_0000157_55856_57103 407
59 3300001979 JGI24740J21852_10000655 JGI24740J21852_100006553 408
60 3300001989 JGI24739J22299_10000559 JGI24739J22299_100005597 408
61 3300001989 JGI24739J22299_10001770 JGI24739J22299_100017705 408
62 3300003320 rootH2_10149900 rootH2_101499003 408
63 3300003323 rootH1_10119321 rootH1_101193212 408
64 3300003323 rootH1_10208777 rootH1_102087775 408
65 3300003354 JGI25160J50197_1000961 JGI25160J50197_10009618 408
66 3300003354 JGI25160J50197_1001406 JGI25160J50197_10014065 408
67 3300003771 Ga0055526_1007095 Ga0055526_10070953 408
68 3300003771 Ga0055526_1009583 Ga0055526_10095833 408
69 3300003790 Ga0055528_1000177 Ga0055528_100017726 408
70 3300003790 Ga0055528_1000327 Ga0055528_100032713 408
71 3300003791 Ga0055530_10000118 Ga0055530_1000011815 408
72 3300003791 Ga0055530_10002240 Ga0055530_100022406 408
73 3300003794 Ga0055531_10013993 Ga0055531_100139933 408
74 3300003794 Ga0055531_10028717 Ga0055531_100287172 408
75 3300005262 Ga0065165_1000022 Ga0065165_100002296 408
76 3300005262 Ga0065165_1000027 Ga0065165_100002757 408
77 3300005262 Ga0065165_1003435 Ga0065165_10034355 408
78 3300005289 Ga0065704_10070892 Ga0065704_100708928 408
79 3300009094 Ga0111539_10237983 Ga0111539_102379832 408
80 3300015265 Ga0182005_1000043 Ga0182005_1000043104 408
81 3300025208 Ga0209436_100778 Ga0209436_1007783 408
82 3300025242 Ga0209258_100302 Ga0209258_1003029 408
83 3300025246 Ga0209646_1003420 Ga0209646_10034204 408
84 3300025254 Ga0209148_1000131 Ga0209148_100013172 408
85 3300025273 Ga0209673_1000078 Ga0209673_1000078157 408
86 3300025273 Ga0209673_1000287 Ga0209673_100028710 408
87 3300025284 Ga0209130_1022859 Ga0209130_10228591 408
88 3300025295 Ga0209564_1002562 Ga0209564_100256210 408
89 3300025295 Ga0209564_1003909 Ga0209564_10039097 408
90 3300025295 Ga0209564_1006314 Ga0209564_10063144 408
91 3300025297 Ga0209758_1003272 Ga0209758_100327210 408
92 3300025297 Ga0209758_1006817 Ga0209758_10068176 408
93 3300025297 Ga0209758_1012838 Ga0209758_10128382 408
94 3300025298 Ga0209050_1000097 Ga0209050_1000097171 408
95 3300025298 Ga0209050_1001109 Ga0209050_10011097 408
96 3300025302 Ga0207426_1002202 Ga0207426_100220211 408
97 3300025303 Ga0209051_1011003 Ga0209051_10110032 408
98 3300025304 Ga0209257_1001571 Ga0209257_100157114 408
99 3300025304 Ga0209257_1001992 Ga0209257_10019922 408
100 3300041997 Ga0439431_0000069 Ga0439431_0000069_5133_6371 408
101 3300042004 Ga0439445_0000674 Ga0439445_0000674_1368_2606 408
102 3300044683 Ga0466965_0051590 Ga0466965_0051590_71_1309 408
103 3300046460 Ga0495638_0098211 Ga0495638_0098211_208_1452 408
104 3300046616 Ga0495668_0000423 Ga0495668_0000423_41956_43212 408
105 3300049571 Ga0501034_0275331 Ga0501034_0275331_167_1405 408
106 3300049581 Ga0501047_0049877 Ga0501047_0049877_217_1461 408
107 3300049581 Ga0501047_0089130 Ga0501047_0089130_908_2146 408
108 3300049703 Ga0501219_000840 Ga0501219_000840_781_2019 408
109 3300049705 Ga0501225_0004424 Ga0501225_0004424_2899_4143 408
110 3300049766 Ga0501269_003376 Ga0501269_003376_333_1589 408
111 3300049822 Ga0501035_0129983 Ga0501035_0129983_184_1422 408
112 3300049823 Ga0501044_0096185 Ga0501044_0096185_1696_2940 408
113 3300049823 Ga0501044_0130706 Ga0501044_0130706_394_1632 408
114 3300050005 Ga0501284_00031 Ga0501284_00031_64591_65829 408
115 3300053086 Ga0500578_0000245 Ga0500578_0000245_64019_65272 408
116 3300053088 Ga0500644_0000026 Ga0500644_0000026_7021_8271 408
117 3300053090 Ga0500646_0002629 Ga0500646_0002629_2445_3695 408
118 3300053109 Ga0500569_000333 Ga0500569_000333_3208_4458 408
119 3300053131 Ga0500652_014538 Ga0500652_014538_186_1424 408
120 3300053134 Ga0500658_0002988 Ga0500658_0002988_662_1912 408
121 3300053136 Ga0500559_0021276 Ga0500559_0021276_1407_2657 408
122 3300053142 Ga0500577_0000168 Ga0500577_0000168_1390_2640 408
123 3300053147 Ga0500589_021862 Ga0500589_021862_1320_2564 408
124 3300053153 Ga0500616_0004864 Ga0500616_0004864_2571_3821 408
125 3300053160 Ga0500633_0000092 Ga0500633_0000092_327_1577 408
126 3300053161 Ga0500634_0018551 Ga0500634_0018551_2410_3660 408
127 iso_pu_bacteria 2896109856 2896114443 408
128 3300002738 JGI25154J39366_1000041 JGI25154J39366_100004140 409
129 3300002741 JGI25157J39369_1003039 JGI25157J39369_10030392 409
130 3300003323 rootH1_10011868 rootH1_1001186810 409
131 3300005262 Ga0065165_1024056 Ga0065165_10240562 409
132 3300009176 Ga0105242_10059809 Ga0105242_100598092 409
133 3300013307 Ga0157372_10305534 Ga0157372_103055342 409
134 3300014325 Ga0163163_10226972 Ga0163163_102269721 409
135 3300025246 Ga0209646_1000122 Ga0209646_100012241 409
136 3300025250 Ga0209026_1000329 Ga0209026_100032940 409
137 3300025302 Ga0207426_1000530 Ga0207426_10005306 409
138 3300031251 Ga0265327_10000055 Ga0265327_10000055121 409
139 3300031251 Ga0265327_10000714 Ga0265327_1000071441 409
140 3300044658 Ga0466972_0000066 Ga0466972_0000066_18687_19934 409
141 3300044658 Ga0466972_0054636 Ga0466972_0054636_388_1635 409
142 3300053086 Ga0500578_0000074 Ga0500578_0000074_1467_2714 409
143 3300053086 Ga0500578_0074542 Ga0500578_0074542_900_2147 409
144 3300053158 Ga0500627_0001811 Ga0500627_0001811_195_1454 409
145 3300005288 Ga0065714_10074092 Ga0065714_100740922 410
146 3300009093 Ga0105240_10000020 Ga0105240_10000020142 410
147 3300013297 Ga0157378_10194343 Ga0157378_101943432 410
148 3300013306 Ga0163162_10070713 Ga0163162_100707133 410
149 3300013307 Ga0157372_10176329 Ga0157372_101763292 410
150 3300028794 Ga0307515_10000001 Ga0307515_100000012819 410
151 3300047318 Ga0495636_0000312 Ga0495636_0000312_12875_14131 410
152 3300053153 Ga0500616_0003096 Ga0500616_0003096_5813_7108 410
153 3300002738 JGI25154J39366_1000023 JGI25154J39366_1000023161 411
154 3300003215 JGI25153J46596_10003607 JGI25153J46596_100036076 411
155 3300003323 rootH1_10024659 rootH1_100246592 411
156 3300003354 JGI25160J50197_1006729 JGI25160J50197_10067292 411
157 3300025246 Ga0209646_1000004 Ga0209646_1000004437 411
158 3300025250 Ga0209026_1000095 Ga0209026_100009545 411
159 3300025297 Ga0209758_1003999 Ga0209758_10039993 411
160 3300025302 Ga0207426_1000456 Ga0207426_100045650 411
161 3300025303 Ga0209051_1029595 Ga0209051_10295952 411
162 3300053092 Ga0500583_0002366 Ga0500583_0002366_3980_5257 411
163 2162886007 SwRhRL2b_contig_1875796 SwRhRL2b_0916.00006570 412
164 3300005289 Ga0065704_10076641 Ga0065704_100766412 412
165 3300044712 Ga0453684_0015856 Ga0453684_0015856_436_1689 412

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01494

FAD_binding_3

FAD binding domain

22

229

0.85

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

23

197

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
6eod-assembly1.cif.gz_H structure of reductive aminase from aspergillus terreus in complex with nadph 0.9701 7 37
6eod-assembly3.cif.gz_D structure of reductive aminase from aspergillus terreus in complex with nadph 0.9652 7 37
6eod-assembly4.cif.gz_E structure of reductive aminase from aspergillus terreus in complex with nadph 0.965 7 37
6eod-assembly2.cif.gz_B structure of reductive aminase from aspergillus terreus in complex with nadph 0.9647 7 37
6eod-assembly3.cif.gz_C structure of reductive aminase from aspergillus terreus in complex with nadph 0.9629 7 37
ID Description Score Start End Superfamily
6eodD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9652 7 37 3.40.50.720
2vq3B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9271 8 34 3.40.50.720
af_O69721_5_180_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.909 7 39 3.40.50.720
af_Q4D0X5_1_185_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.906 8 37 3.40.50.720
3h2sB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9056 8 37 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3S1D0G6-F1-model_v4 Geranylgeranyl reductase family protein 0.9686 6 411 GO:0016628
GO:0071949
AF-A0A3S1D0G6-F1-model_v4 Geranylgeranyl reductase family protein 0.9546 6 411 GO:0016628
GO:0071949
AF-A0A2N5ZVM1-F1-model_v4 Uncharacterized protein 0.9543 4 390 GO:0016628
AF-A0A3B8W5R3-F1-model_v4 FAD-binding domain-containing protein 0.9526 33 300
AF-A0A2N5ZVM1-F1-model_v4 Uncharacterized protein 0.9519 4 390 GO:0016628

Feature Viewer

pLDDT pTM Quality
90.57 0.9 High
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Predicted Structure (AlphaFold2)

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