F246231

General Info

Members Datasets Scaffolds Average Seq Length
165 131 330 160

Family's Representative Sequence

Representative Sequence 3300014969|Ga0157376_10889246|Ga0157376_108892461
Length 175
Sequence MVRFSSFNPLENERMAMADQLEKKFWKALESDMTMMLGLDGVEDGHVRPMTAQIEDGLGPIWFFAGRDNALVQSLGGGKRAIATFASKGHDLFASVRGNLRLDNDRAVIDRLWNRFVAAWYEGGKDDPNLALLRLDAESAEIWESGSSLIAGIKSLLGSDPKKDYKDHVAEVRLK

Samples

Sample ID Description Type Environment
1 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
30 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
46 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
70 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
78 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
79 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
82 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
83 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
84 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
85 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
86 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
87 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
88 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
89 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
95 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
98 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
99 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
100 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
101 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
102 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
107 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
108 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
109 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
112 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
113 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
114 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
115 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
116 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
117 2643221551 Mesorhizobium sp. Root1471 Isolate Unclassified
118 2643221555 Mesorhizobium sp. Root554 Isolate Unclassified
119 2643221618 Ensifer sp. Root231 Isolate Unclassified
120 2643221626 Ensifer sp. Root31 Isolate Unclassified
121 2643221655 Ensifer sp. Root1252 Isolate Unclassified
122 2643221659 Ensifer sp. Root127 Isolate Unclassified
123 2643221688 Rhizobium sp. Root482 Isolate Unclassified
124 2643221698 Ensifer sp. Root142 Isolate Unclassified
125 2643221712 Ensifer sp. Root258 Isolate Unclassified
126 2791355123 Mesorhizobium sophorae ICMP 19535 Isolate Unclassified
127 2844163670 Ensifer sp. 1H6 Isolate Unclassified
128 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
129 2924762789 Mesorhizobium sp. WSM4303 Isolate Unclassified
130 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
131 2987666974 Mesorhizobium sp. WSM4306 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.48
Metatranscriptomes 2.42
Isolates 9.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.88
Nodule 0
Rhizoplane 7.88
Rhizosphere 70.91
Stem 0
Stem Tuber 0
Unclassified 15.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157376_10889246 3300014969 Unclassified 908
2 rootL2_10208435 3300003322 Bacteria 1523
3 rootH1_10330869 3300003323 Bacteria 1550
4 JGI25404J52841_10018002 3300003659 Bacteria 1531
5 Ga0065704_10318337 3300005289 Unclassified 857
6 Ga0065715_10014372 3300005293 Bacteria 2796
7 Ga0070683_100058041 3300005329 Bacteria 3596
8 Ga0070683_101427586 3300005329 Bacteria 665
9 Ga0070666_10478993 3300005335 Bacteria 901
10 Ga0070680_100014305 3300005336 Bacteria 6197
11 Ga0070680_100782048 3300005336 Unclassified 822
12 Ga0070682_100162539 3300005337 Bacteria 1544
13 Ga0070682_100707584 3300005337 Unclassified 808
14 Ga0070687_100134000 3300005343 Bacteria 1434
15 Ga0070674_100974269 3300005356 Bacteria 743
16 Ga0070659_101759533 3300005366 Bacteria 555
17 Ga0070663_100660272 3300005455 Bacteria 885
18 Ga0070681_10199115 3300005458 Bacteria 1921
19 Ga0070685_10159843 3300005466 Bacteria 1435
20 Ga0070679_100196683 3300005530 Bacteria 1983
21 Ga0070684_100115177 3300005535 Bacteria 2414
22 Ga0070665_100000412 3300005548 Bacteria 62584
23 Ga0070665_100441214 3300005548 Bacteria 1311
24 Ga0070665_101471055 3300005548 Bacteria 690
25 Ga0070702_100495184 3300005615 Unclassified 896
26 Ga0068864_100302755 3300005618 Bacteria 1497
27 Ga0068864_102030608 3300005618 Bacteria 581
28 Ga0068861_100086965 3300005719 Bacteria 2458
29 Ga0068863_100058200 3300005841 Bacteria 3658
30 Ga0068858_100101589 3300005842 Bacteria 2682
31 Ga0068858_101338184 3300005842 Unclassified 705
32 Ga0068860_100031960 3300005843 Bacteria 5060
33 Ga0081538_10213373 3300005981 Unclassified 775
34 Ga0081540_1019867 3300005983 Bacteria 4064
35 Ga0075365_10029049 3300006038 Bacteria 3529
36 Ga0075365_10180239 3300006038 Bacteria 1477
37 Ga0075369_10039388 3300006186 Bacteria 2018
38 Ga0075366_10092520 3300006195 Bacteria 1812
39 Ga0097621_100095554 3300006237 Bacteria 2493
40 Ga0075370_10080951 3300006353 Bacteria 1866
41 Ga0068871_100253522 3300006358 Bacteria 1533
42 Ga0105240_10062497 3300009093 Bacteria 4636
43 Ga0105240_10658027 3300009093 Unclassified 1147
44 Ga0111539_10019623 3300009094 Bacteria 8341
45 Ga0111539_10160144 3300009094 Bacteria 2633
46 Ga0111539_12715749 3300009094 Bacteria 574
47 Ga0105248_10066049 3300009177 Bacteria 4062
48 Ga0105238_10165272 3300009551 Bacteria 2188
49 Ga0105238_10214359 3300009551 Unclassified 1902
50 Ga0105238_11347105 3300009551 Bacteria 740
51 Ga0105238_12006746 3300009551 Bacteria 612
52 Ga0105249_10505885 3300009553 Bacteria 1254
53 Ga0157378_10636619 3300013297 Bacteria 1081
54 Ga0157375_10037731 3300013308 Bacteria 4632
55 Ga0163163_11404250 3300014325 Bacteria 760
56 Ga0157380_10013041 3300014326 Bacteria 6046
57 Ga0157379_10371935 3300014968 Bacteria 1310
58 Ga0157379_11835008 3300014968 Bacteria 596
59 Ga0206356_10443735 3300020070 Unclassified 722
60 Ga0206355_1306334 3300020076 Bacteria 794
61 Ga0206350_11312101 3300020080 Bacteria 895
62 Ga0213873_10000010 3300021358 Bacteria 223024
63 Ga0213876_10000027 3300021384 Bacteria 223024
64 Ga0207680_10430682 3300025903 Bacteria 935
65 Ga0207707_10560488 3300025912 Unclassified 970
66 Ga0207660_10055494 3300025917 Bacteria 2831
67 Ga0207652_10250429 3300025921 Bacteria 1597
68 Ga0207694_10147568 3300025924 Unclassified 1894
69 Ga0207706_10718415 3300025933 Bacteria 853
70 Ga0207709_11219181 3300025935 Unclassified 620
71 Ga0207669_10598865 3300025937 Bacteria 896
72 Ga0207711_10060430 3300025941 Bacteria 3266
73 Ga0207711_11358534 3300025941 Bacteria 653
74 Ga0207661_10162067 3300025944 Unclassified 1941
75 Ga0207703_10080417 3300026035 Bacteria 2714
76 Ga0207678_10259690 3300026067 Bacteria 1489
77 Ga0207678_10895150 3300026067 Bacteria 785
78 Ga0207641_10074513 3300026088 Bacteria 2928
79 Ga0207676_10227560 3300026095 Bacteria 1665
80 Ga0207674_10240835 3300026116 Bacteria 1756
81 Ga0207674_10694281 3300026116 Bacteria 982
82 Ga0207674_10882470 3300026116 Unclassified 862
83 Ga0207675_100121074 3300026118 Bacteria 2476
84 Ga0209983_1067494 3300027665 Bacteria 794
85 Ga0209974_10070061 3300027876 Bacteria 1195
86 Ga0268266_10000642 3300028379 Bacteria 47516
87 Ga0268266_10381401 3300028379 Bacteria 1330
88 Ga0268266_10567223 3300028379 Bacteria 1089
89 Ga0268266_10875767 3300028379 Bacteria 868
90 Ga0268264_10081908 3300028381 Bacteria 2760
91 Ga0268264_10384265 3300028381 Bacteria 1345
92 Ga0265334_10058458 3300028573 Unclassified 1459
93 Ga0265331_10000831 3300031250 Bacteria 25190
94 Ga0307509_10824749 3300031507 Unclassified 592
95 Ga0307408_100549372 3300031548 Bacteria 1019
96 Ga0307413_10267904 3300031824 Bacteria 1277
97 Ga0307410_10993089 3300031852 Bacteria 723
98 Ga0307409_100672112 3300031995 Unclassified 1032
99 Ga0307416_101559674 3300032002 Bacteria 766
100 Ga0307411_11049567 3300032005 Unclassified 732
101 Ga0307415_100196730 3300032126 Bacteria 1596
102 Ga0373940_0033962 3300035088 Bacteria 1374
103 Ga0436365_0662033 3300039437 Bacteria 58921
104 Ga0436362_0553655 3300039453 Bacteria 122937
105 Ga0451791_1665917 3300041451 Bacteria 770
106 Ga0451807_2045145 3300041486 Unclassified 2477
107 Ga0451807_2539959 3300041486 Bacteria 3838
108 Ga0451849_1211688 3300041505 Unclassified 516
109 Ga0451853_2435186 3300041512 Bacteria 900
110 Ga0439449_0034884 3300042007 Bacteria 1873
111 Ga0439459_0119398 3300042438 Bacteria 663
112 Ga0495638_0000729 3300046460 Bacteria 35378
113 Ga0495638_0123879 3300046460 Bacteria 1525
114 Ga0495638_0128413 3300046460 Bacteria 1492
115 Ga0495585_0140174 3300046492 Bacteria 1267
116 Ga0495625_0001277 3300046660 Bacteria 31617
117 Ga0495625_0054290 3300046660 Bacteria 2862
118 Ga0495625_0245374 3300046660 Bacteria 1164
119 Ga0495686_0156610 3300047472 Bacteria 1334
120 Ga0495686_0302900 3300047472 Unclassified 881
121 Ga0495686_0402282 3300047472 Bacteria 735
122 Ga0496100_1586399 3300048903 Bacteria 517
123 Ga0496104_0533772 3300048907 Bacteria 1084
124 Ga0496105_0277894 3300048908 Bacteria 1351
125 Ga0496106_0164644 3300048909 Bacteria 1755
126 Ga0496106_0370251 3300048909 Bacteria 1151
127 Ga0496109_0583765 3300048912 Bacteria 1053
128 Ga0496109_1294667 3300048912 Unclassified 665
129 Ga0496111_0052351 3300048914 Bacteria 2947
130 Ga0496112_0447006 3300048915 Bacteria 1230
131 Ga0496113_0603317 3300048916 Bacteria 879
132 Ga0496118_0202456 3300048921 Bacteria 1174
133 Ga0496126_0005484 3300048929 Bacteria 14457
134 Ga0501305_114832 3300049161 Bacteria 512
135 Ga0501034_0183243 3300049571 Bacteria 2058
136 Ga0501043_0274671 3300049579 Bacteria 1293
137 Ga0501070_0397625 3300049586 Bacteria 1115
138 Ga0501070_0878430 3300049586 Unclassified 700
139 Ga0501072_1457621 3300049588 Bacteria 529
140 Ga0501216_035561 3300049660 Bacteria 937
141 nmdc:mga0yw44_215893_c1 3300050492 Bacteria 1270
142 nmdc:mga0yw44_311770_c1 3300050492 Bacteria 1056
143 nmdc:mga07m45_388682_c1 3300050496 Bacteria 810
144 nmdc:mga08y16_1815834_c1 3300050511 Bacteria 562
145 Ga0495655_0050096 3300053083 Bacteria 1102
146 Ga0500641_0026129 3300053096 Bacteria 2265
147 Ga0500556_0002041 3300053104 Bacteria 7013
148 Ga0500604_0020711 3300053151 Bacteria 1853
149 Ga0500616_0308878 3300053153 Unclassified 655
150 Ga0500587_003627 3300053739 Bacteria 2148
151 2643776195 2643221551 Bacteria 3750538
152 2643794642 2643221555 Bacteria 3749717
153 2644104145 2643221618 Bacteria 7717186
154 2644149515 2643221626 Bacteria 8069654
155 2644307018 2643221655 Bacteria 7722067
156 2644331503 2643221659 Bacteria 7890716
157 2644493914 2643221688 Bacteria 5260751
158 2644540330 2643221698 Bacteria 7756764
159 2644619257 2643221712 Bacteria 7729434
160 2792752238 2791355123 Bacteria 8049106
161 2844170811 2844163670 Bacteria 7266046
162 2894656748 2894652903 Bacteria 4587256
163 2924768399 2924762789 Bacteria 6561353
164 2941502436 2941499720 Bacteria 7599444
165 2987669274 2987666974 Bacteria 6509233
166 Ga0157376_10889246
167 rootL2_10208435
168 rootH1_10330869
169 JGI25404J52841_10018002
170 Ga0065704_10318337
171 Ga0065715_10014372
172 Ga0070683_100058041
173 Ga0070683_101427586
174 Ga0070666_10478993
175 Ga0070680_100014305
176 Ga0070680_100782048
177 Ga0070682_100162539
178 Ga0070682_100707584
179 Ga0070687_100134000
180 Ga0070674_100974269
181 Ga0070659_101759533
182 Ga0070663_100660272
183 Ga0070681_10199115
184 Ga0070685_10159843
185 Ga0070679_100196683
186 Ga0070684_100115177
187 Ga0070665_100000412
188 Ga0070665_100441214
189 Ga0070665_101471055
190 Ga0070702_100495184
191 Ga0068864_100302755
192 Ga0068864_102030608
193 Ga0068861_100086965
194 Ga0068863_100058200
195 Ga0068858_100101589
196 Ga0068858_101338184
197 Ga0068860_100031960
198 Ga0081538_10213373
199 Ga0081540_1019867
200 Ga0075365_10029049
201 Ga0075365_10180239
202 Ga0075369_10039388
203 Ga0075366_10092520
204 Ga0097621_100095554
205 Ga0075370_10080951
206 Ga0068871_100253522
207 Ga0105240_10062497
208 Ga0105240_10658027
209 Ga0111539_10019623
210 Ga0111539_10160144
211 Ga0111539_12715749
212 Ga0105248_10066049
213 Ga0105238_10165272
214 Ga0105238_10214359
215 Ga0105238_11347105
216 Ga0105238_12006746
217 Ga0105249_10505885
218 Ga0157378_10636619
219 Ga0157375_10037731
220 Ga0163163_11404250
221 Ga0157380_10013041
222 Ga0157379_10371935
223 Ga0157379_11835008
224 Ga0206356_10443735
225 Ga0206355_1306334
226 Ga0206350_11312101
227 Ga0213873_10000010
228 Ga0213876_10000027
229 Ga0207680_10430682
230 Ga0207707_10560488
231 Ga0207660_10055494
232 Ga0207652_10250429
233 Ga0207694_10147568
234 Ga0207706_10718415
235 Ga0207709_11219181
236 Ga0207669_10598865
237 Ga0207711_10060430
238 Ga0207711_11358534
239 Ga0207661_10162067
240 Ga0207703_10080417
241 Ga0207678_10259690
242 Ga0207678_10895150
243 Ga0207641_10074513
244 Ga0207676_10227560
245 Ga0207674_10240835
246 Ga0207674_10694281
247 Ga0207674_10882470
248 Ga0207675_100121074
249 Ga0209983_1067494
250 Ga0209974_10070061
251 Ga0268266_10000642
252 Ga0268266_10381401
253 Ga0268266_10567223
254 Ga0268266_10875767
255 Ga0268264_10081908
256 Ga0268264_10384265
257 Ga0265334_10058458
258 Ga0265331_10000831
259 Ga0307509_10824749
260 Ga0307408_100549372
261 Ga0307413_10267904
262 Ga0307410_10993089
263 Ga0307409_100672112
264 Ga0307416_101559674
265 Ga0307411_11049567
266 Ga0307415_100196730
267 Ga0373940_0033962
268 Ga0436365_0662033
269 Ga0436362_0553655
270 Ga0451791_1665917
271 Ga0451807_2045145
272 Ga0451807_2539959
273 Ga0451849_1211688
274 Ga0451853_2435186
275 Ga0439449_0034884
276 Ga0439459_0119398
277 Ga0495638_0000729
278 Ga0495638_0123879
279 Ga0495638_0128413
280 Ga0495585_0140174
281 Ga0495625_0001277
282 Ga0495625_0054290
283 Ga0495625_0245374
284 Ga0495686_0156610
285 Ga0495686_0302900
286 Ga0495686_0402282
287 Ga0496100_1586399
288 Ga0496104_0533772
289 Ga0496105_0277894
290 Ga0496106_0164644
291 Ga0496106_0370251
292 Ga0496109_0583765
293 Ga0496109_1294667
294 Ga0496111_0052351
295 Ga0496112_0447006
296 Ga0496113_0603317
297 Ga0496118_0202456
298 Ga0496126_0005484
299 Ga0501305_114832
300 Ga0501034_0183243
301 Ga0501043_0274671
302 Ga0501070_0397625
303 Ga0501070_0878430
304 Ga0501072_1457621
305 Ga0501216_035561
306 nmdc:mga0yw44_215893_c1
307 nmdc:mga0yw44_311770_c1
308 nmdc:mga07m45_388682_c1
309 nmdc:mga08y16_1815834_c1
310 Ga0495655_0050096
311 Ga0500641_0026129
312 Ga0500556_0002041
313 Ga0500604_0020711
314 Ga0500616_0308878
315 Ga0500587_003627
316 2643776195
317 2643794642
318 2644104145
319 2644149515
320 2644307018
321 2644331503
322 2644493914
323 2644540330
324 2644619257
325 2792752238
326 2844170811
327 2894656748
328 2924768399
329 2941502436
330 2987669274

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16242

Pyrid_ox_like

Pyridoxamine 5'-phosphate oxidase like

20

164

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dmb-assembly1.cif.gz_C-2 crystal structure of a putative general stress family protein (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a resolution 0.9531 5 135
3u34-assembly1.cif.gz_A crystal structure of the general stress fmn/fad binding protein from the phytopathogen xanthomonas citri 0.933 5 135
3dmb-assembly1.cif.gz_B-2 crystal structure of a putative general stress family protein (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a resolution 0.9235 1 135
3dmb-assembly1.cif.gz_C-2 crystal structure of a putative general stress family protein (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a resolution 0.8643 5 135
2re7-assembly1.cif.gz_A-2 crystal structure of a pyridoxamine 5'-phosphate oxidase related protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a resolution 0.8607 10 134
ID Description Score Start End Superfamily
3dmbC00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.9496 5 135 2.30.110.10
3dmbC00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8593 5 135 2.30.110.10
2re7A00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8534 10 134 2.30.110.10
2re7A00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8045 10 134 2.30.110.10
2qeaB00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.7938 6 162 2.30.110.10
ID Description Score Start End GO Terms
AF-A0A528TKU1-F1-model_v4 General stress protein 0.9723 54 162
AF-A0A2A3CW05-F1-model_v4 deleted 0.9691 1 162
AF-A0A528TKU1-F1-model_v4 General stress protein 0.9636 54 162
AF-A0A2A3CW05-F1-model_v4 deleted 0.9632 1 162
AF-A0A0S2FPM0-F1-model_v4 deleted 0.9539 1 163

Map