F246035

General Info

Members Datasets Scaffolds Average Seq Length
165 124 330 1005

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10005451|Ga0114129_100054516
Length 1104
Sequence MRVAIGSDHAGFELKQSVAGFLVEDNQNVVDVGTYSKEPVDYPDYAEAVGTALREHRADRGIIICGSGVGASMAANRIPGIRAGLCHDTYSAHQGVEHDDMNVLVLGGRVVGVELARELIRAFLNAQFTGEARYRRRLAKVTALENPLRALQVFGQSVWLDYIRRSLISSGELGRMIDEDGLRGVTSNPAIFEKAIAGSSDYKEILEAPDARSLDAKTLYERLAVRDIQDAADALRAVYEETSKRDGYVSLEVSPLLAYDTAGTLDEARRLWKAVGRDNLMIKVPATPQGIPAIQQLISEGLNVNVTLLFSQEAYEQVAEAYISGLEKLVAGGGDATRVTSVASFFISRIDSAVDALIEARLQETSDVKDRSALRALTGKVAIANAKVTFRRYQELFSGPRWQALARQGAQTQRLLWASTSTKNPNYRDVVYVEELIGPDTVNTIPPATFEAFRDHGRPRASLADDVDSAFDTMKALAENRISMTEVTDKLLAEGVQLFADAFAKLLKAVEKQSRDRGADRINRLAHTLPEPLAAAVKRSLAEWRTQGKVRRLWSRDASLWSGRDEAQWLGWLGVTNGQLAHIERLTRISEAARSGGFSHVLLLGMGGSSLCPEVIKATFGKIDGWPDLHVLDSTDPAQVKAFENTVDLTKTLFIVSSKSGSTLEPNIFKQYFFDRVERLVGSNEAGRRFIAITDPGSKMQQVAERDGFRQIFFGWPTIGGRYSALSDFGLVPAAIMGVDVAKFLDRAEEMVCACMPSVPVEENPGVVLGTILGVAANDFGRDKLTIIASPAISSLGAWLEQLVAESTGKEGKGVIPINREALARPDVYGLDRVFVYLRLLSAPDVTQDAAVDTLERAGHPVVRIGVDDPYDLGEEFFRWEFATAVAGSILGIHPFDQPDVEASKIATRKLTEEYEKSGMLPTETPIFTADGISLFTDKKNAAELIARLNGNDTLEGYLEAHIGRLRAGDYFALLAYIEMNPAHERALQTMRQDVRDARRVATCLEFGPRFLHSTGQAYKGGPNTGVFLQITCDDTNDLAVPGQKYTFGVVKAAQARGDFQVLVERERRALRVHLGADVSGGLARLQAAVLAALMSHPTNLQNR

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
71 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
72 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
73 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
74 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
81 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
82 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
83 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
84 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
85 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
86 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
87 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
88 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
89 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
90 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
91 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
92 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
93 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
94 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
105 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
106 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
107 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
110 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
113 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
116 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
117 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
118 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
119 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
120 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
123 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
124 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.39
Metatranscriptomes 0.61
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.03
Nodule 0
Rhizoplane 1.21
Rhizosphere 94.55
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10005451 3300009147 Bacteria 17973
2 Ga0070690_100005698 3300005330 Bacteria 7016
3 Ga0070689_100002216 3300005340 Bacteria 12598
4 Ga0070689_100025357 3300005340 Bacteria 4452
5 Ga0070687_100004952 3300005343 Bacteria 5352
6 Ga0070671_100002801 3300005355 Bacteria 13547
7 Ga0070674_100011476 3300005356 Bacteria 5396
8 Ga0070673_100000174 3300005364 Bacteria 31279
9 Ga0070711_100024351 3300005439 Bacteria 3947
10 Ga0070694_100032034 3300005444 Bacteria 3450
11 Ga0070662_100005355 3300005457 Bacteria 8195
12 Ga0070699_100014532 3300005518 Bacteria 6772
13 Ga0070697_100000039 3300005536 Bacteria 95513
14 Ga0070672_100008951 3300005543 Bacteria 6881
15 Ga0070686_100002019 3300005544 Bacteria 11261
16 Ga0070704_100021782 3300005549 Bacteria 4160
17 Ga0070664_100003526 3300005564 Bacteria 12636
18 Ga0068856_100036927 3300005614 Bacteria 4791
19 Ga0068863_100012515 3300005841 Bacteria 8187
20 Ga0068858_100010088 3300005842 Bacteria 8968
21 Ga0068860_100006456 3300005843 Bacteria 11774
22 Ga0081455_10001016 3300005937 Bacteria 35419
23 Ga0081455_10001551 3300005937 Bacteria 28269
24 Ga0081538_10001405 3300005981 Bacteria 24724
25 Ga0081538_10009861 3300005981 Bacteria 7899
26 Ga0070717_10000944 3300006028 Bacteria 19365
27 Ga0075364_10002602 3300006051 Bacteria 10124
28 Ga0070712_100004244 3300006175 Bacteria 8820
29 Ga0075362_10001014 3300006177 Bacteria 8636
30 Ga0075366_10004036 3300006195 Bacteria 7849
31 Ga0097621_100002509 3300006237 Bacteria 12569
32 Ga0068871_100001577 3300006358 Bacteria 15326
33 Ga0068871_100003532 3300006358 Bacteria 10755
34 Ga0075428_100009839 3300006844 Bacteria 10626
35 Ga0075428_100011873 3300006844 Bacteria 9688
36 Ga0075431_100055505 3300006847 Bacteria 4086
37 Ga0075433_10010235 3300006852 Bacteria 7522
38 Ga0075434_100000958 3300006871 Bacteria 23248
39 Ga0075434_100013568 3300006871 Bacteria 7762
40 Ga0075429_100032867 3300006880 Bacteria 4508
41 Ga0075436_100002159 3300006914 Bacteria 13558
42 Ga0075436_100028891 3300006914 Bacteria 3815
43 Ga0075435_100000242 3300007076 Bacteria 33676
44 Ga0105240_10018502 3300009093 Bacteria 9352
45 Ga0111539_10000032 3300009094 Bacteria 159626
46 Ga0111539_10008380 3300009094 Bacteria 13152
47 Ga0111539_10017747 3300009094 Bacteria 8810
48 Ga0105245_10010473 3300009098 Bacteria 8072
49 Ga0114129_10000028 3300009147 Bacteria 112185
50 Ga0114129_10000189 3300009147 Bacteria 69127
51 Ga0114129_10000486 3300009147 Bacteria 48028
52 Ga0114129_10009851 3300009147 Bacteria 13631
53 Ga0114129_10037421 3300009147 Bacteria 6850
54 Ga0105237_10008884 3300009545 Bacteria 10829
55 Ga0105238_10036738 3300009551 Bacteria 4980
56 Ga0105239_10016758 3300010375 Bacteria 8100
57 Ga0157378_10000495 3300013297 Bacteria 37372
58 Ga0157378_10000620 3300013297 Bacteria 33448
59 Ga0157372_10021757 3300013307 Bacteria 6931
60 Ga0157372_10022871 3300013307 Bacteria 6769
61 Ga0157372_10072706 3300013307 Bacteria 3876
62 Ga0207680_10000338 3300025903 Bacteria 22335
63 Ga0207645_10005284 3300025907 Bacteria 9402
64 Ga0207707_10021637 3300025912 Bacteria 5620
65 Ga0207695_10059551 3300025913 Bacteria 3959
66 Ga0207671_10025395 3300025914 Bacteria 4450
67 Ga0207693_10002620 3300025915 Bacteria 15633
68 Ga0207662_10000539 3300025918 Bacteria 16781
69 Ga0207646_10005232 3300025922 Bacteria 13691
70 Ga0207659_10000532 3300025926 Bacteria 22731
71 Ga0207659_10007842 3300025926 Bacteria 6598
72 Ga0207700_10002847 3300025928 Bacteria 9955
73 Ga0207706_10003394 3300025933 Bacteria 15226
74 Ga0207670_10007356 3300025936 Bacteria 6139
75 Ga0207665_10024394 3300025939 Bacteria 3986
76 Ga0207691_10014036 3300025940 Bacteria 7643
77 Ga0207679_10001838 3300025945 Bacteria 13203
78 Ga0207703_10011121 3300026035 Bacteria 7007
79 Ga0207708_10030612 3300026075 Bacteria 4081
80 Ga0207641_10009050 3300026088 Bacteria 8225
81 Ga0207641_10031146 3300026088 Bacteria 4423
82 Ga0207675_100020498 3300026118 Bacteria 6163
83 Ga0207428_10004586 3300027907 Bacteria 13095
84 Ga0207428_10039444 3300027907 Bacteria 3835
85 Ga0268264_10008594 3300028381 Bacteria 8484
86 Ga0268264_10021797 3300028381 Bacteria 5229
87 Ga0265760_10001743 3300031090 Bacteria 6400
88 Ga0265339_10005488 3300031249 Bacteria 8447
89 Ga0265313_10000131 3300031595 Bacteria 75926
90 Ga0307416_100047960 3300032002 Bacteria 3385
91 Ga0373931_0017459 3300035691 Bacteria 3550
92 Ga0373935_0005499 3300035692 Bacteria 7463
93 Ga0373927_0001116 3300035695 Bacteria 20391
94 Ga0373927_0001454 3300035695 Bacteria 17855
95 Ga0373927_0001930 3300035695 Bacteria 15305
96 Ga0373947_0000084 3300035725 Bacteria 46913
97 Ga0373937_0010470 3300036401 Bacteria 8097
98 Ga0373925_0000870 3300037068 Bacteria 27585
99 Ga0395900_0003990 3300037418 Bacteria 15763
100 Ga0395905_0001039 3300037471 Bacteria 35155
101 Ga0395905_0001111 3300037471 Bacteria 33782
102 Ga0395905_0006547 3300037471 Bacteria 11707
103 Ga0395901_0004868 3300038443 Bacteria 13555
104 Ga0436365_1712708 3300039437 Bacteria 68148
105 Ga0436363_0009406 3300039450 Bacteria 12262
106 Ga0453683_0000919 3300044673 Bacteria 28095
107 Ga0495629_0013940 3300046459 Bacteria 5795
108 Ga0495638_0028033 3300046460 Bacteria 3640
109 Ga0495580_0003165 3300046472 Bacteria 14112
110 Ga0495664_0002961 3300046477 Bacteria 9169
111 Ga0495618_0001056 3300046514 Bacteria 18774
112 Ga0495630_0003105 3300046517 Bacteria 11512
113 Ga0495630_0028077 3300046517 Bacteria 4180
114 Ga0495665_0006224 3300046531 Bacteria 6442
115 Ga0495640_0000444 3300046533 Bacteria 30171
116 Ga0495634_0001959 3300046642 Bacteria 17575
117 Ga0495634_0002563 3300046642 Bacteria 15014
118 Ga0495635_0004363 3300046663 Bacteria 9792
119 Ga0495674_0001781 3300047319 Bacteria 21231
120 Ga0495674_0002656 3300047319 Bacteria 17397
121 Ga0495676_0029622 3300047321 Bacteria 4660
122 Ga0495684_0002432 3300047471 Bacteria 14842
123 Ga0495684_0004686 3300047471 Bacteria 10671
124 Ga0496102_0005530 3300048905 Bacteria 10731
125 Ga0496104_0004169 3300048907 Bacteria 12544
126 Ga0501034_0023865 3300049571 Bacteria 6227
127 Ga0501036_0017837 3300049572 Bacteria 5942
128 Ga0501039_0007119 3300049575 Bacteria 8522
129 Ga0501042_0033407 3300049578 Bacteria 3647
130 Ga0501046_0000679 3300049580 Bacteria 33015
131 Ga0501047_0005419 3300049581 Bacteria 12000
132 Ga0501048_0015343 3300049582 Bacteria 5658
133 Ga0501068_0003842 3300049584 Bacteria 8151
134 Ga0501072_0012203 3300049588 Bacteria 6566
135 Ga0501072_0037125 3300049588 Bacteria 3821
136 Ga0501075_0007685 3300049591 Bacteria 7483
137 Ga0501077_0036175 3300049593 Bacteria 3145
138 Ga0501080_0000914 3300049742 Bacteria 24162
139 Ga0501080_0055977 3300049742 Bacteria 3673
140 Ga0501081_0034635 3300049743 Bacteria 3436
141 Ga0501083_0009276 3300049744 Bacteria 6945
142 Ga0501044_0020798 3300049823 Bacteria 7004
143 Ga0501045_0031027 3300049824 Bacteria 3870
144 nmdc:mga06z11_13523_c1 3300050494 Bacteria 3587
145 nmdc:mga05p37_1101_c1 3300050507 Bacteria 31023
146 nmdc:mga05p37_16900_c1 3300050507 Bacteria 8797
147 nmdc:mga05p37_18342_c1 3300050507 Bacteria 8451
148 nmdc:mga05p37_5811_c1 3300050507 Bacteria 9875
149 nmdc:mga05p37_669_c1 3300050507 Bacteria 37823
150 nmdc:mga06r32_16738_c1 3300050510 Bacteria 6683
151 nmdc:mga06r32_21113_c1 3300050510 Bacteria 6008
152 nmdc:mga08y16_19129_c1 3300050511 Bacteria 7216
153 nmdc:mga08y16_22479_c1 3300050511 Bacteria 6657
154 nmdc:mga08y16_230_c1 3300050511 Bacteria 50237
155 nmdc:mga0n895_27969_c1 3300050512 Bacteria 5359
156 nmdc:mga08x19_3477_c1 3300050514 Bacteria 9386
157 Ga0495601_0006599 3300053077 Bacteria 6785
158 Ga0495612_0001770 3300053078 Bacteria 8847
159 Ga0495619_0004297 3300053085 Bacteria 9085
160 Ga0500637_0001723 3300053178 Bacteria 9426
161 Ga0501084_0013972 3300054114 Bacteria 6646
162 Ga0501084_0017647 3300054114 Bacteria 5938
163 Ga0501084_0040070 3300054114 Bacteria 3918
164 Ga0501082_0005509 3300060353 Bacteria 10986
165 Ga0501082_0027754 3300060353 Bacteria 4874
166 Ga0114129_10005451
167 Ga0070690_100005698
168 Ga0070689_100002216
169 Ga0070689_100025357
170 Ga0070687_100004952
171 Ga0070671_100002801
172 Ga0070674_100011476
173 Ga0070673_100000174
174 Ga0070711_100024351
175 Ga0070694_100032034
176 Ga0070662_100005355
177 Ga0070699_100014532
178 Ga0070697_100000039
179 Ga0070672_100008951
180 Ga0070686_100002019
181 Ga0070704_100021782
182 Ga0070664_100003526
183 Ga0068856_100036927
184 Ga0068863_100012515
185 Ga0068858_100010088
186 Ga0068860_100006456
187 Ga0081455_10001016
188 Ga0081455_10001551
189 Ga0081538_10001405
190 Ga0081538_10009861
191 Ga0070717_10000944
192 Ga0075364_10002602
193 Ga0070712_100004244
194 Ga0075362_10001014
195 Ga0075366_10004036
196 Ga0097621_100002509
197 Ga0068871_100001577
198 Ga0068871_100003532
199 Ga0075428_100009839
200 Ga0075428_100011873
201 Ga0075431_100055505
202 Ga0075433_10010235
203 Ga0075434_100000958
204 Ga0075434_100013568
205 Ga0075429_100032867
206 Ga0075436_100002159
207 Ga0075436_100028891
208 Ga0075435_100000242
209 Ga0105240_10018502
210 Ga0111539_10000032
211 Ga0111539_10008380
212 Ga0111539_10017747
213 Ga0105245_10010473
214 Ga0114129_10000028
215 Ga0114129_10000189
216 Ga0114129_10000486
217 Ga0114129_10009851
218 Ga0114129_10037421
219 Ga0105237_10008884
220 Ga0105238_10036738
221 Ga0105239_10016758
222 Ga0157378_10000495
223 Ga0157378_10000620
224 Ga0157372_10021757
225 Ga0157372_10022871
226 Ga0157372_10072706
227 Ga0207680_10000338
228 Ga0207645_10005284
229 Ga0207707_10021637
230 Ga0207695_10059551
231 Ga0207671_10025395
232 Ga0207693_10002620
233 Ga0207662_10000539
234 Ga0207646_10005232
235 Ga0207659_10000532
236 Ga0207659_10007842
237 Ga0207700_10002847
238 Ga0207706_10003394
239 Ga0207670_10007356
240 Ga0207665_10024394
241 Ga0207691_10014036
242 Ga0207679_10001838
243 Ga0207703_10011121
244 Ga0207708_10030612
245 Ga0207641_10009050
246 Ga0207641_10031146
247 Ga0207675_100020498
248 Ga0207428_10004586
249 Ga0207428_10039444
250 Ga0268264_10008594
251 Ga0268264_10021797
252 Ga0265760_10001743
253 Ga0265339_10005488
254 Ga0265313_10000131
255 Ga0307416_100047960
256 Ga0373931_0017459
257 Ga0373935_0005499
258 Ga0373927_0001116
259 Ga0373927_0001454
260 Ga0373927_0001930
261 Ga0373947_0000084
262 Ga0373937_0010470
263 Ga0373925_0000870
264 Ga0395900_0003990
265 Ga0395905_0001039
266 Ga0395905_0001111
267 Ga0395905_0006547
268 Ga0395901_0004868
269 Ga0436365_1712708
270 Ga0436363_0009406
271 Ga0453683_0000919
272 Ga0495629_0013940
273 Ga0495638_0028033
274 Ga0495580_0003165
275 Ga0495664_0002961
276 Ga0495618_0001056
277 Ga0495630_0003105
278 Ga0495630_0028077
279 Ga0495665_0006224
280 Ga0495640_0000444
281 Ga0495634_0001959
282 Ga0495634_0002563
283 Ga0495635_0004363
284 Ga0495674_0001781
285 Ga0495674_0002656
286 Ga0495676_0029622
287 Ga0495684_0002432
288 Ga0495684_0004686
289 Ga0496102_0005530
290 Ga0496104_0004169
291 Ga0501034_0023865
292 Ga0501036_0017837
293 Ga0501039_0007119
294 Ga0501042_0033407
295 Ga0501046_0000679
296 Ga0501047_0005419
297 Ga0501048_0015343
298 Ga0501068_0003842
299 Ga0501072_0012203
300 Ga0501072_0037125
301 Ga0501075_0007685
302 Ga0501077_0036175
303 Ga0501080_0000914
304 Ga0501080_0055977
305 Ga0501081_0034635
306 Ga0501083_0009276
307 Ga0501044_0020798
308 Ga0501045_0031027
309 nmdc:mga06z11_13523_c1
310 nmdc:mga05p37_1101_c1
311 nmdc:mga05p37_16900_c1
312 nmdc:mga05p37_18342_c1
313 nmdc:mga05p37_5811_c1
314 nmdc:mga05p37_669_c1
315 nmdc:mga06r32_16738_c1
316 nmdc:mga06r32_21113_c1
317 nmdc:mga08y16_19129_c1
318 nmdc:mga08y16_22479_c1
319 nmdc:mga08y16_230_c1
320 nmdc:mga0n895_27969_c1
321 nmdc:mga08x19_3477_c1
322 Ga0495601_0006599
323 Ga0495612_0001770
324 Ga0495619_0004297
325 Ga0500637_0001723
326 Ga0501084_0013972
327 Ga0501084_0017647
328 Ga0501084_0040070
329 Ga0501082_0005509
330 Ga0501082_0027754

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02502

LacAB_rpiB

Ribose/Galactose Isomerase

3

141

0.97

PF00923

TAL_FSA

Transaldolase/Fructose-6-phosphate aldolase

158

510

0.95

PF00342

PGI

Phosphoglucose isomerase

578

817

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7oey-assembly1.cif.gz_B neisseria gonnorhoeae variant e93q at 1.35 angstrom resolution 0.9659 153 501
7bbx-assembly1.cif.gz_A neisseria gonorrhoeae transaldolase, variant k8a 0.9644 153 501
7bbw-assembly2.cif.gz_B neisseria gonorrhoeae transaldolase, variant c38s 0.961 153 501
4lfk-assembly1.cif.gz_B crystal structure of d-galactose-6-phosphate isomerase in a substrate-free form 0.9588 3 143
7odq-assembly1.cif.gz_A neisseria gonorrhoeae transaldolase at 5.4 mgy dose 0.9541 153 501
ID Description Score Start End Superfamily
3clmA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9618 153 501 3.20.20.70
4lfkB00 Alpha Beta;3-Layer(aba) Sandwich;Ribose 5-phosphate Isomerase B; Chain: A,;Sugar-phosphate isomerase, RpiB/LacA/LacB 0.9588 3 143 3.40.1400.10
af_B4FRC9_66_421_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9485 150 504 3.20.20.70
1nn4D00 Alpha Beta;3-Layer(aba) Sandwich;Ribose 5-phosphate Isomerase B; Chain: A,;Sugar-phosphate isomerase, RpiB/LacA/LacB 0.9439 3 146 3.40.1400.10
3r5eA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9408 148 505 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7K4E7T9-F1-model_v4 deleted 0.9888 517 1000
AF-A0A2N6U686-F1-model_v4 deleted 0.9887 222 328
AF-A0A2V8MZT2-F1-model_v4 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.9873 517 1086 GO:0004347
GO:0005829
GO:0006094
GO:0006096
GO:0048029
GO:0051156
GO:0097367
AF-A0A3C0CVE7-F1-model_v4 Glucose-6-phosphate isomerase 0.9839 645 875 GO:0004347
GO:0005829
GO:0006094
GO:0006096
GO:0048029
GO:0051156
GO:0097367
AF-A0A2D9M2T9-F1-model_v4 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.9818 517 1089 GO:0004347
GO:0005829
GO:0006094
GO:0006096
GO:0048029
GO:0051156
GO:0097367

Map