F245952

General Info

Members Datasets Scaffolds Average Seq Length
165 43 330 434

Family's Representative Sequence

Representative Sequence 3300007076|Ga0075435_100101129|Ga0075435_1001011292
Length 462
Sequence MFHVLHPANANRACHTRGMQARMALRVWRLGLLLVGAAIALLPLQGAAAAPRIEQADLNGDINTITASYVETSVSRAEADRADALLLILNTPGGISTSMDDIVTSLVNSTVPVIVYVYPSGARAASAGLFVAQAADVLAMAPGTNIGSAHPIQASGGDITGDLGAKVLNDAVTRVRNLASMHGRNADWAEQAVRNSVNINAEEAVRLHVADLEASSISSLLQQTDGRELTRHGGTVTLHTAGATINDYPMPFWQVFLNVLIDPTIAALLILVAGYGIITELSNPGLILPGVVGGIAAVLAIVSLANLPVNIAGALMMLLALILFIADIKAPTHGFLSVGGVIALILGMAFLVNTGPIGLGVNPITSVAAALITAGFFVFFIRKVVEARRRPAFVGGDSMVGAVGHVRRDLAPEGLVFVQGALWKASAESPIPAGSTVRVLSRKGLELQVARENGHPETKEEA

Samples

Sample ID Description Type Environment
1 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
4 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
5 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
21 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
33 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
34 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
35 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
36 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
37 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
38 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
39 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
40 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
41 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
42 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
43 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 3.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075435_100101129 3300007076 Bacteria 2388
2 Ga0070714_100000990 3300005435 Bacteria 20281
3 Ga0070714_100043316 3300005435 Bacteria 3806
4 Ga0070714_100151325 3300005435 Bacteria 2091
5 Ga0070713_100010985 3300005436 Bacteria 6569
6 Ga0070705_100004477 3300005440 Bacteria 6806
7 Ga0070708_100000062 3300005445 Bacteria 70144
8 Ga0070708_100001215 3300005445 Bacteria 19794
9 Ga0070708_100001432 3300005445 Bacteria 18201
10 Ga0070708_100009185 3300005445 Bacteria 7973
11 Ga0070708_100011998 3300005445 Bacteria 7062
12 Ga0070708_100012788 3300005445 Bacteria 6857
13 Ga0070708_100013201 3300005445 Bacteria 6757
14 Ga0070708_100032400 3300005445 Bacteria 4534
15 Ga0070708_100092787 3300005445 Bacteria 2751
16 Ga0070708_100106116 3300005445 Bacteria 2578
17 Ga0070708_100181981 3300005445 Unclassified 1965
18 Ga0070681_10162269 3300005458 Unclassified 2159
19 Ga0070706_100000039 3300005467 Bacteria 150482
20 Ga0070706_100000046 3300005467 Bacteria 143869
21 Ga0070706_100000144 3300005467 Bacteria 90033
22 Ga0070706_100000229 3300005467 Bacteria 68466
23 Ga0070706_100000238 3300005467 Bacteria 67181
24 Ga0070706_100000284 3300005467 Bacteria 61545
25 Ga0070706_100000741 3300005467 Bacteria 36820
26 Ga0070706_100025715 3300005467 Bacteria 5418
27 Ga0070706_100045564 3300005467 Bacteria 4051
28 Ga0070706_100047086 3300005467 Bacteria 3979
29 Ga0070706_100051581 3300005467 Bacteria 3797
30 Ga0070706_100059670 3300005467 Bacteria 3521
31 Ga0070706_100071771 3300005467 Bacteria 3203
32 Ga0070706_100119574 3300005467 Bacteria 2455
33 Ga0070707_100000034 3300005468 Bacteria 117028
34 Ga0070707_100000392 3300005468 Bacteria 43132
35 Ga0070707_100000820 3300005468 Bacteria 30823
36 Ga0070707_100002064 3300005468 Bacteria 19255
37 Ga0070707_100004614 3300005468 Bacteria 12891
38 Ga0070707_100005394 3300005468 Bacteria 11964
39 Ga0070707_100007297 3300005468 Bacteria 10264
40 Ga0070707_100012057 3300005468 Bacteria 8069
41 Ga0070707_100013044 3300005468 Bacteria 7766
42 Ga0070707_100039539 3300005468 Bacteria 4508
43 Ga0070707_100065049 3300005468 Bacteria 3502
44 Ga0070707_100072913 3300005468 Bacteria 3310
45 Ga0070698_100004757 3300005471 Bacteria 14901
46 Ga0070698_100005670 3300005471 Bacteria 13670
47 Ga0070698_100011672 3300005471 Bacteria 9317
48 Ga0070698_100021018 3300005471 Bacteria 6838
49 Ga0070698_100027451 3300005471 Bacteria 5921
50 Ga0070698_100047050 3300005471 Bacteria 4410
51 Ga0070698_100276983 3300005471 Bacteria 1609
52 Ga0070699_100000105 3300005518 Bacteria 78799
53 Ga0070699_100000127 3300005518 Bacteria 70260
54 Ga0070699_100000248 3300005518 Bacteria 53012
55 Ga0070699_100000355 3300005518 Bacteria 44525
56 Ga0070699_100000846 3300005518 Bacteria 28347
57 Ga0070699_100002441 3300005518 Bacteria 16686
58 Ga0070699_100005000 3300005518 Bacteria 11690
59 Ga0070699_100011719 3300005518 Bacteria 7568
60 Ga0070699_100027315 3300005518 Bacteria 4924
61 Ga0070699_100039781 3300005518 Bacteria 4071
62 Ga0070699_100080605 3300005518 Bacteria 2837
63 Ga0070699_100082087 3300005518 Bacteria 2809
64 Ga0070699_100084896 3300005518 Bacteria 2763
65 Ga0070697_100000023 3300005536 Bacteria 132367
66 Ga0070697_100000030 3300005536 Bacteria 111048
67 Ga0070697_100000625 3300005536 Bacteria 26854
68 Ga0070697_100001027 3300005536 Bacteria 21074
69 Ga0070697_100002602 3300005536 Bacteria 13888
70 Ga0070697_100006231 3300005536 Bacteria 9236
71 Ga0070697_100011398 3300005536 Bacteria 6948
72 Ga0070697_100028305 3300005536 Bacteria 4486
73 Ga0070697_100097401 3300005536 Unclassified 2441
74 Ga0070695_100033200 3300005545 Bacteria 3229
75 Ga0070695_100123993 3300005545 Bacteria 1771
76 Ga0070704_100033708 3300005549 Bacteria 3465
77 Ga0081539_10008347 3300005985 Bacteria 9052
78 Ga0070717_10000020 3300006028 Bacteria 172640
79 Ga0070717_10000197 3300006028 Bacteria 42378
80 Ga0070717_10000461 3300006028 Bacteria 25861
81 Ga0070717_10011051 3300006028 Bacteria 6839
82 Ga0070717_10160079 3300006028 Bacteria 1952
83 Ga0070717_10223719 3300006028 Bacteria 1655
84 Ga0070712_100230672 3300006175 Bacteria 1470
85 Ga0075431_100217375 3300006847 Bacteria 1950
86 Ga0075433_10005386 3300006852 Bacteria 10053
87 Ga0075433_10267512 3300006852 Bacteria 1515
88 Ga0075434_100060240 3300006871 Bacteria 3775
89 Ga0075436_100004842 3300006914 Bacteria 9252
90 Ga0075436_100024311 3300006914 Bacteria 4164
91 Ga0075436_100031313 3300006914 Bacteria 3662
92 Ga0075436_100037958 3300006914 Bacteria 3325
93 Ga0075435_100005136 3300007076 Bacteria 9099
94 Ga0075435_100036342 3300007076 Bacteria 3914
95 Ga0075435_100043425 3300007076 Bacteria 3598
96 Ga0099794_10020553 3300007265 Bacteria 2989
97 Ga0099794_10028806 3300007265 Bacteria 2584
98 Ga0105240_10006753 3300009093 Bacteria 16796
99 Ga0111539_10084501 3300009094 Bacteria 3731
100 Ga0114129_10000466 3300009147 Bacteria 48604
101 Ga0114129_10179173 3300009147 Bacteria 2885
102 Ga0207653_10004488 3300025885 Bacteria 4377
103 Ga0207684_10000001 3300025910 Bacteria 1115726
104 Ga0207684_10000003 3300025910 Bacteria 766933
105 Ga0207684_10000031 3300025910 Bacteria 296401
106 Ga0207684_10000046 3300025910 Bacteria 251569
107 Ga0207684_10000103 3300025910 Bacteria 161901
108 Ga0207684_10000112 3300025910 Bacteria 150502
109 Ga0207684_10000147 3300025910 Bacteria 124645
110 Ga0207684_10000154 3300025910 Bacteria 119373
111 Ga0207684_10003327 3300025910 Bacteria 15783
112 Ga0207684_10010211 3300025910 Bacteria 8264
113 Ga0207684_10014564 3300025910 Bacteria 6775
114 Ga0207684_10031064 3300025910 Bacteria 4545
115 Ga0207684_10042782 3300025910 Bacteria 3841
116 Ga0207684_10043606 3300025910 Bacteria 3804
117 Ga0207684_10102026 3300025910 Bacteria 2453
118 Ga0207684_10103071 3300025910 Bacteria 2440
119 Ga0207646_10000064 3300025922 Bacteria 150502
120 Ga0207646_10000233 3300025922 Bacteria 76555
121 Ga0207646_10000373 3300025922 Bacteria 59879
122 Ga0207646_10000482 3300025922 Bacteria 53410
123 Ga0207646_10000935 3300025922 Bacteria 37511
124 Ga0207646_10001132 3300025922 Bacteria 34051
125 Ga0207646_10002831 3300025922 Bacteria 20183
126 Ga0207646_10003380 3300025922 Bacteria 18051
127 Ga0207646_10003670 3300025922 Bacteria 17141
128 Ga0207646_10004301 3300025922 Bacteria 15549
129 Ga0207646_10009972 3300025922 Bacteria 9333
130 Ga0207646_10010740 3300025922 Bacteria 8907
131 Ga0207646_10013392 3300025922 Bacteria 7847
132 Ga0207646_10015360 3300025922 Bacteria 7233
133 Ga0207646_10017691 3300025922 Bacteria 6661
134 Ga0207646_10019775 3300025922 Bacteria 6251
135 Ga0207646_10022521 3300025922 Bacteria 5803
136 Ga0207646_10036287 3300025922 Bacteria 4450
137 Ga0207664_10000278 3300025929 Bacteria 38790
138 Ga0207664_10038930 3300025929 Bacteria 3688
139 Ga0207664_10144613 3300025929 Unclassified 2015
140 Ga0207665_10019338 3300025939 Bacteria 4477
141 Ga0207665_10021724 3300025939 Bacteria 4222
142 Ga0207665_10025198 3300025939 Bacteria 3924
143 Ga0207667_10124197 3300025949 Bacteria 2659
144 Ga0209588_1010260 3300027671 Bacteria 2814
145 Ga0373939_0001207 3300035114 Bacteria 6323
146 Ga0395899_0001877 3300037312 Bacteria 17349
147 Ga0395900_0141798 3300037418 Bacteria 2460
148 Ga0395900_0149584 3300037418 Bacteria 2386
149 Ga0395898_0016572 3300037466 Bacteria 7534
150 Ga0395905_0000138 3300037471 Bacteria 120373
151 Ga0395905_0004452 3300037471 Bacteria 14562
152 Ga0395905_0195902 3300037471 Bacteria 1894
153 Ga0395901_0018128 3300038443 Bacteria 7184
154 Ga0436360_0592562 3300039438 Bacteria 2906
155 nmdc:mga05p37_2702_c1 3300050507 Bacteria 20619
156 nmdc:mga0n895_11318_c1 3300050512 Bacteria 7950
157 nmdc:mga0n895_180292_c1 3300050512 Bacteria 2144
158 nmdc:mga0n895_40675_c1 3300050512 Unclassified 4516
159 nmdc:mga0rr50_3713_c1 3300050513 Bacteria 8845
160 nmdc:mga08x19_107090_c1 3300050514 Bacteria 1861
161 nmdc:mga08x19_11057_c1 3300050514 Bacteria 5432
162 nmdc:mga08x19_29269_c1 3300050514 Bacteria 3454
163 nmdc:mga08x19_49929_c1 3300050514 Bacteria 2684
164 nmdc:mga0a205_30715_c1 3300050515 Bacteria 5146
165 nmdc:mga0a205_4378_c1 3300050515 Bacteria 12659
166 Ga0075435_100101129
167 Ga0070714_100000990
168 Ga0070714_100043316
169 Ga0070714_100151325
170 Ga0070713_100010985
171 Ga0070705_100004477
172 Ga0070708_100000062
173 Ga0070708_100001215
174 Ga0070708_100001432
175 Ga0070708_100009185
176 Ga0070708_100011998
177 Ga0070708_100012788
178 Ga0070708_100013201
179 Ga0070708_100032400
180 Ga0070708_100092787
181 Ga0070708_100106116
182 Ga0070708_100181981
183 Ga0070681_10162269
184 Ga0070706_100000039
185 Ga0070706_100000046
186 Ga0070706_100000144
187 Ga0070706_100000229
188 Ga0070706_100000238
189 Ga0070706_100000284
190 Ga0070706_100000741
191 Ga0070706_100025715
192 Ga0070706_100045564
193 Ga0070706_100047086
194 Ga0070706_100051581
195 Ga0070706_100059670
196 Ga0070706_100071771
197 Ga0070706_100119574
198 Ga0070707_100000034
199 Ga0070707_100000392
200 Ga0070707_100000820
201 Ga0070707_100002064
202 Ga0070707_100004614
203 Ga0070707_100005394
204 Ga0070707_100007297
205 Ga0070707_100012057
206 Ga0070707_100013044
207 Ga0070707_100039539
208 Ga0070707_100065049
209 Ga0070707_100072913
210 Ga0070698_100004757
211 Ga0070698_100005670
212 Ga0070698_100011672
213 Ga0070698_100021018
214 Ga0070698_100027451
215 Ga0070698_100047050
216 Ga0070698_100276983
217 Ga0070699_100000105
218 Ga0070699_100000127
219 Ga0070699_100000248
220 Ga0070699_100000355
221 Ga0070699_100000846
222 Ga0070699_100002441
223 Ga0070699_100005000
224 Ga0070699_100011719
225 Ga0070699_100027315
226 Ga0070699_100039781
227 Ga0070699_100080605
228 Ga0070699_100082087
229 Ga0070699_100084896
230 Ga0070697_100000023
231 Ga0070697_100000030
232 Ga0070697_100000625
233 Ga0070697_100001027
234 Ga0070697_100002602
235 Ga0070697_100006231
236 Ga0070697_100011398
237 Ga0070697_100028305
238 Ga0070697_100097401
239 Ga0070695_100033200
240 Ga0070695_100123993
241 Ga0070704_100033708
242 Ga0081539_10008347
243 Ga0070717_10000020
244 Ga0070717_10000197
245 Ga0070717_10000461
246 Ga0070717_10011051
247 Ga0070717_10160079
248 Ga0070717_10223719
249 Ga0070712_100230672
250 Ga0075431_100217375
251 Ga0075433_10005386
252 Ga0075433_10267512
253 Ga0075434_100060240
254 Ga0075436_100004842
255 Ga0075436_100024311
256 Ga0075436_100031313
257 Ga0075436_100037958
258 Ga0075435_100005136
259 Ga0075435_100036342
260 Ga0075435_100043425
261 Ga0099794_10020553
262 Ga0099794_10028806
263 Ga0105240_10006753
264 Ga0111539_10084501
265 Ga0114129_10000466
266 Ga0114129_10179173
267 Ga0207653_10004488
268 Ga0207684_10000001
269 Ga0207684_10000003
270 Ga0207684_10000031
271 Ga0207684_10000046
272 Ga0207684_10000103
273 Ga0207684_10000112
274 Ga0207684_10000147
275 Ga0207684_10000154
276 Ga0207684_10003327
277 Ga0207684_10010211
278 Ga0207684_10014564
279 Ga0207684_10031064
280 Ga0207684_10042782
281 Ga0207684_10043606
282 Ga0207684_10102026
283 Ga0207684_10103071
284 Ga0207646_10000064
285 Ga0207646_10000233
286 Ga0207646_10000373
287 Ga0207646_10000482
288 Ga0207646_10000935
289 Ga0207646_10001132
290 Ga0207646_10002831
291 Ga0207646_10003380
292 Ga0207646_10003670
293 Ga0207646_10004301
294 Ga0207646_10009972
295 Ga0207646_10010740
296 Ga0207646_10013392
297 Ga0207646_10015360
298 Ga0207646_10017691
299 Ga0207646_10019775
300 Ga0207646_10022521
301 Ga0207646_10036287
302 Ga0207664_10000278
303 Ga0207664_10038930
304 Ga0207664_10144613
305 Ga0207665_10019338
306 Ga0207665_10021724
307 Ga0207665_10025198
308 Ga0207667_10124197
309 Ga0209588_1010260
310 Ga0373939_0001207
311 Ga0395899_0001877
312 Ga0395900_0141798
313 Ga0395900_0149584
314 Ga0395898_0016572
315 Ga0395905_0000138
316 Ga0395905_0004452
317 Ga0395905_0195902
318 Ga0395901_0018128
319 Ga0436360_0592562
320 nmdc:mga05p37_2702_c1
321 nmdc:mga0n895_11318_c1
322 nmdc:mga0n895_180292_c1
323 nmdc:mga0n895_40675_c1
324 nmdc:mga0rr50_3713_c1
325 nmdc:mga08x19_107090_c1
326 nmdc:mga08x19_11057_c1
327 nmdc:mga08x19_29269_c1
328 nmdc:mga08x19_49929_c1
329 nmdc:mga0a205_30715_c1
330 nmdc:mga0a205_4378_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01957

NfeD

NfeD-like C-terminal, partner-binding

368

451

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cp0-assembly1.cif.gz_A crystal structure of the soluble domain of membrane protein implicated in regulation of membrane protease activity from corynebacterium glutamicum 0.9632 352 404
3wwv-assembly1.cif.gz_A-2 c-terminal domain of stomatin operon partner protein 1510-c from pyrococcus horikoshii 0.943 348 408
6m4b-assembly1.cif.gz_B 1510-n membrane-bound stomatin-specific protease s97a mutant 0.9242 26 228
2deo-assembly1.cif.gz_A 1510-n membrane protease specific for a stomatin homolog from pyrococcus horikoshii 0.9184 27 241
3viv-assembly1.cif.gz_B 1510-n membrane-bound stomatin-specific protease k138a mutant in complex with a substrate peptide 0.9174 26 241
ID Description Score Start End Superfamily
3cp0A00 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9473 352 404 2.40.50.140
af_P71767_83_144_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9445 351 408 2.40.50.140
3wwvA00 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.943 348 408 2.40.50.140
af_Q2FXZ8_166_227_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9395 347 408 2.40.50.140
af_Q2FXZ8_166_227_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9251 347 408 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A7K2EGZ9-F1-model_v4 Nodulation protein NfeD 0.969 26 93 GO:0005886
AF-A0A3C0B563-F1-model_v4 Serine protease 0.967 353 407 GO:0005886
GO:0006508
GO:0008233
AF-A0A3D0DG96-F1-model_v4 Serine protease 0.9572 27 207 GO:0006508
GO:0008233
AF-W4RPP6-F1-model_v4 NfeD-like C-terminal domain-containing protein 0.9571 354 408 GO:0005886
AF-A0A806KHH2-F1-model_v4 NfeD-like C-terminal domain-containing protein 0.9562 350 407

Map