F244003

General Info

Members Datasets Scaffolds Average Seq Length
164 133 328 275

Family's Representative Sequence

Representative Sequence 3300025302|Ga0207426_1009479|Ga0207426_10094794
Length 320
Sequence VRTAPQAPRQTPAPTPLTWLYVPGDRPDVVAKALGCGADVVVVDLEDAVAPDRKDHALRATAELLGDPLPVPVHVRVNALDGPLAEHEIRTLATLPGLAGLRLPKVQGPADVHRAAGWATTAAEPVPEHVPYAAEGPVPPAGHPRTLVRTPPGSTATLPALYALLESALGVEHAFAIATAHPALRGIALGEADLCGELGVRDDTGLAWPRSRAVVAARAAGLAPPPQSVHPDVHDLDGLARSCARGRALGFLGRAAIHPRQLPVIEAAYLPSAEEVAAAREIVRAATAEGGALALPDGRFVDAAVVAGARRVLDLAGRRS

Samples

Sample ID Description Type Environment
1 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
6 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
7 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
8 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
9 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
10 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
11 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
12 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
13 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
14 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
15 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
20 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
21 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
22 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
23 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
24 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
25 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
26 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
27 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
28 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
29 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
30 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
31 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
32 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
33 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
34 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
35 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
36 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
37 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
38 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
39 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
40 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
41 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
42 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
43 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
44 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
45 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
46 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
47 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
48 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
49 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
50 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
51 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
52 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
53 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
54 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
55 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
56 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
57 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
58 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
59 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
60 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
61 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
62 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
63 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
64 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
65 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
66 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
67 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
68 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
69 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
70 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
71 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
72 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
73 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
74 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
75 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
76 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
77 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
78 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
79 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
80 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
81 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
82 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
83 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
84 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
85 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
86 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
98 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
99 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
100 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
101 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
102 2643221714 Streptomyces sp. Root264 Isolate Unclassified
103 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
104 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
105 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
106 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
107 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
108 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
109 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
110 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
111 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
112 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
113 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
114 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
115 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
116 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
117 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
118 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
119 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
120 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
121 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
122 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
123 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
124 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
125 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
126 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
127 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
128 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
129 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
130 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
131 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
132 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
133 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.44
Metatranscriptomes 0.61
Isolates 21.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.88
Nodule 0.61
Rhizoplane 0.61
Rhizosphere 77.44
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207426_1009479 3300025302 Bacteria 3850
2 rootL2_10003654 3300003322 Bacteria 3818
3 Ga0006562J51391_1079899 3300003578 Bacteria 7660
4 Ga0070658_10014939 3300005327 Bacteria 6217
5 Ga0070665_100047191 3300005548 Bacteria 4324
6 Ga0068854_100205519 3300005578 Bacteria 1550
7 Ga0075365_10056291 3300006038 Bacteria 2614
8 Ga0075367_10004830 3300006178 Bacteria 6641
9 Ga0099826_10178851 3300006948 Bacteria 1183
10 Ga0105251_10017453 3300009011 Bacteria 3845
11 Ga0157372_10197580 3300013307 Bacteria 2329
12 Ga0182008_10002374 3300014497 Bacteria 11848
13 Ga0182007_10002207 3300015262 Bacteria 9873
14 Ga0183367_1007 3300015688 Bacteria 498079
15 Ga0207426_1005595 3300025302 Bacteria 5692
16 Ga0207426_1025784 3300025302 Bacteria 1977
17 Ga0207713_1065034 3300025735 Bacteria 1370
18 Ga0207647_10013735 3300025904 Bacteria 5608
19 Ga0207705_10034935 3300025909 Bacteria 3596
20 Ga0207640_10101301 3300025981 Bacteria 2020
21 Ga0209371_1015604 3300027312 Bacteria 2034
22 Ga0307515_10030199 3300028794 Bacteria 9117
23 Ga0307511_10021766 3300030521 Bacteria 6022
24 Ga0307512_10013555 3300030522 Bacteria 7633
25 Ga0307512_10021720 3300030522 Bacteria 5782
26 Ga0307508_10084185 3300031616 Bacteria 2762
27 Ga0307514_10001845 3300031649 Bacteria 23467
28 Ga0307514_10079082 3300031649 Bacteria 2439
29 Ga0307516_10000836 3300031730 Bacteria 42164
30 Ga0307516_10018475 3300031730 Bacteria 7244
31 Ga0307518_10182879 3300031838 Bacteria 1415
32 Ga0307510_10132864 3300033180 Bacteria 2155
33 Ga0395899_0251727 3300037312 Bacteria 1212
34 Ga0395900_0288819 3300037418 Bacteria 1629
35 Ga0395898_0009489 3300037466 Bacteria 10217
36 Ga0395901_0273027 3300038443 Bacteria 1758
37 Ga0439436_0057255 3300041404 Bacteria 1093
38 Ga0439439_0048427 3300041406 Bacteria 1111
39 Ga0451849_0650227 3300041505 Bacteria 1243
40 Ga0451853_0925822 3300041512 Bacteria 2943
41 Ga0439433_0000876 3300041999 Bacteria 5988
42 Ga0439449_0010715 3300042007 Bacteria 3462
43 Ga0439455_0010612 3300042012 Bacteria 2030
44 Ga0439457_000022 3300042014 Bacteria 30879
45 Ga0450903_000407 3300042138 Bacteria 9224
46 Ga0466972_0013045 3300044658 Bacteria 4175
47 Ga0466972_0051196 3300044658 Bacteria 1992
48 Ga0466972_0189367 3300044658 Bacteria 964
49 Ga0466965_0166598 3300044683 Bacteria 1157
50 Ga0466966_0000681 3300044684 Bacteria 21566
51 Ga0466961_0052422 3300044693 Bacteria 2603
52 Ga0466963_0079677 3300044694 Bacteria 2216
53 Ga0466964_0091385 3300044706 Bacteria 1325
54 Ga0495617_044813 3300046452 Bacteria 1475
55 Ga0495603_0003426 3300046455 Bacteria 9434
56 Ga0495603_0075224 3300046455 Bacteria 1982
57 Ga0495603_0145945 3300046455 Bacteria 1375
58 Ga0495629_0054325 3300046459 Bacteria 2801
59 Ga0495629_0065312 3300046459 Bacteria 2540
60 Ga0495651_0141466 3300046462 Bacteria 1744
61 Ga0495582_0344598 3300046473 Bacteria 858
62 Ga0495605_0001479 3300046474 Bacteria 15341
63 Ga0495639_0106847 3300046475 Bacteria 1325
64 Ga0495662_0011420 3300046476 Bacteria 4340
65 Ga0495662_0072980 3300046476 Bacteria 1664
66 Ga0495662_0114644 3300046476 Bacteria 1321
67 Ga0495662_0190404 3300046476 Bacteria 1011
68 Ga0495584_0109584 3300046491 Bacteria 1397
69 Ga0495594_0134582 3300046499 Bacteria 1400
70 Ga0495607_0025198 3300046501 Bacteria 3701
71 Ga0495583_0030510 3300046506 Bacteria 2624
72 Ga0495583_0068852 3300046506 Bacteria 1559
73 Ga0495583_0075739 3300046506 Bacteria 1471
74 Ga0495606_0038997 3300046507 Bacteria 3208
75 Ga0495616_0021417 3300046513 Bacteria 3501
76 Ga0495620_0090417 3300046515 Bacteria 1228
77 Ga0495628_0130473 3300046516 Bacteria 1922
78 Ga0495631_0017453 3300046518 Bacteria 3395
79 Ga0495644_0059920 3300046523 Bacteria 1431
80 Ga0495666_0023043 3300046526 Bacteria 3080
81 Ga0495640_0064425 3300046533 Bacteria 2478
82 Ga0495609_0005095 3300046538 Bacteria 7003
83 Ga0495597_0018693 3300046542 Bacteria 3249
84 Ga0495633_0112777 3300046558 Bacteria 1260
85 Ga0495668_0012642 3300046616 Bacteria 5002
86 Ga0495668_0040205 3300046616 Bacteria 2608
87 Ga0495634_0120218 3300046642 Bacteria 1682
88 Ga0495661_0113835 3300046665 Bacteria 1504
89 Ga0495657_0008893 3300046675 Bacteria 7646
90 Ga0495623_0146563 3300046679 Bacteria 1399
91 Ga0495613_0011579 3300046689 Bacteria 6556
92 Ga0495613_0054146 3300046689 Bacteria 2950
93 Ga0495649_0012663 3300046694 Bacteria 4895
94 Ga0495589_0012966 3300046794 Bacteria 4307
95 Ga0495589_0062516 3300046794 Bacteria 1826
96 Ga0495636_0008405 3300047318 Bacteria 4073
97 Ga0495636_0048079 3300047318 Bacteria 1782
98 Ga0495636_0138068 3300047318 Bacteria 1087
99 Ga0495636_0187555 3300047318 Bacteria 940
100 Ga0495676_0063570 3300047321 Bacteria 2875
101 Ga0495676_0097839 3300047321 Bacteria 2178
102 Ga0495687_038642 3300047443 Bacteria 2116
103 Ga0495675_0037309 3300047444 Bacteria 3095
104 Ga0495685_003013 3300047447 Bacteria 5330
105 Ga0495685_011233 3300047447 Bacteria 3017
106 Ga0495685_070992 3300047447 Bacteria 1166
107 Ga0495681_0083855 3300047470 Bacteria 1418
108 Ga0495626_0062496 3300048091 Bacteria 1691
109 Ga0496108_0066107 3300048911 Bacteria 3049
110 Ga0501033_0024027 3300049570 Bacteria 4598
111 Ga0501034_0094484 3300049571 Bacteria 2986
112 Ga0501036_0266802 3300049572 Bacteria 1434
113 Ga0501038_0038165 3300049574 Bacteria 4207
114 Ga0501038_0240228 3300049574 Bacteria 1438
115 Ga0501047_0000068 3300049581 Bacteria 129241
116 Ga0501047_0342035 3300049581 Bacteria 1333
117 Ga0501047_0353649 3300049581 Bacteria 1305
118 Ga0501048_0062777 3300049582 Bacteria 2629
119 Ga0501035_0093825 3300049822 Bacteria 2640
120 Ga0501035_0121081 3300049822 Bacteria 2287
121 Ga0501035_0188303 3300049822 Bacteria 1775
122 Ga0501035_0279332 3300049822 Bacteria 1412
123 Ga0501044_0010943 3300049823 Bacteria 9847
124 Ga0501044_0285296 3300049823 Bacteria 1583
125 Ga0501045_0236537 3300049824 Bacteria 1360
126 nmdc:mga03n38_306329_c1 3300050490 Bacteria 854
127 nmdc:mga0yw44_135301_c1 3300050492 Bacteria 1598
128 nmdc:mga06z11_3814_c1 3300050494 Bacteria 5871
129 2585314176 2582581314 Bacteria 11452267
130 2616694201 2616644814 Bacteria 11555299
131 2623589084 2622736626 Bacteria 7181580
132 2644435700 2643221678 Bacteria 9540101
133 2644629474 2643221714 Bacteria 9015452
134 2676482339 2675903059 Bacteria 8644972
135 2768645223 2767802112 Bacteria 6465194
136 2804844311 2802429296 Bacteria 7227771
137 2808840509 2808606359 Bacteria 9866990
138 2808919088 2808606375 Bacteria 9466072
139 2812359673 2811994879 Bacteria 9313447
140 2812481797 2811994917 Bacteria 7761064
141 2852638345 2852635781 Bacteria 8251373
142 2861523210 2861520306 Bacteria 8348283
143 2862288776 2862281513 Bacteria 9621493
144 2862295090 2862290372 Bacteria 7471434
145 2867349107 2867346516 Bacteria 7608576
146 2868093597 2868088558 Bacteria 7609351
147 2912721721 2912715099 Bacteria 9460473
148 2912725571 2912723979 Bacteria 8557534
149 2912759423 2912757875 Bacteria 7940295
150 2919473045 2919468124 Bacteria 9133025
151 2935396794 2935390628 Bacteria 7043367
152 2946066236 2946064051 Bacteria 8957905
153 2946074505 2946072368 Bacteria 8999607
154 2954004447 2954002825 Bacteria 9173742
155 2954698707 2954691527 Bacteria 10720516
156 2954703515 2954701450 Bacteria 10834262
157 2996228428 2996221748 Bacteria 6799777
158 2997458634 2997451912 Bacteria 8492419
159 3006327447 3006321560 Bacteria 8247479
160 3006396515 3006393351 Bacteria 6615579
161 3006489513 3006486233 Bacteria 8157040
162 8008580167 8008574985 Bacteria 7815457
163 8025417026 8025413630 Bacteria 7014048
164 8056831140 8056829672 Bacteria 9045328
165 Ga0207426_1009479
166 rootL2_10003654
167 Ga0006562J51391_1079899
168 Ga0070658_10014939
169 Ga0070665_100047191
170 Ga0068854_100205519
171 Ga0075365_10056291
172 Ga0075367_10004830
173 Ga0099826_10178851
174 Ga0105251_10017453
175 Ga0157372_10197580
176 Ga0182008_10002374
177 Ga0182007_10002207
178 Ga0183367_1007
179 Ga0207426_1005595
180 Ga0207426_1025784
181 Ga0207713_1065034
182 Ga0207647_10013735
183 Ga0207705_10034935
184 Ga0207640_10101301
185 Ga0209371_1015604
186 Ga0307515_10030199
187 Ga0307511_10021766
188 Ga0307512_10013555
189 Ga0307512_10021720
190 Ga0307508_10084185
191 Ga0307514_10001845
192 Ga0307514_10079082
193 Ga0307516_10000836
194 Ga0307516_10018475
195 Ga0307518_10182879
196 Ga0307510_10132864
197 Ga0395899_0251727
198 Ga0395900_0288819
199 Ga0395898_0009489
200 Ga0395901_0273027
201 Ga0439436_0057255
202 Ga0439439_0048427
203 Ga0451849_0650227
204 Ga0451853_0925822
205 Ga0439433_0000876
206 Ga0439449_0010715
207 Ga0439455_0010612
208 Ga0439457_000022
209 Ga0450903_000407
210 Ga0466972_0013045
211 Ga0466972_0051196
212 Ga0466972_0189367
213 Ga0466965_0166598
214 Ga0466966_0000681
215 Ga0466961_0052422
216 Ga0466963_0079677
217 Ga0466964_0091385
218 Ga0495617_044813
219 Ga0495603_0003426
220 Ga0495603_0075224
221 Ga0495603_0145945
222 Ga0495629_0054325
223 Ga0495629_0065312
224 Ga0495651_0141466
225 Ga0495582_0344598
226 Ga0495605_0001479
227 Ga0495639_0106847
228 Ga0495662_0011420
229 Ga0495662_0072980
230 Ga0495662_0114644
231 Ga0495662_0190404
232 Ga0495584_0109584
233 Ga0495594_0134582
234 Ga0495607_0025198
235 Ga0495583_0030510
236 Ga0495583_0068852
237 Ga0495583_0075739
238 Ga0495606_0038997
239 Ga0495616_0021417
240 Ga0495620_0090417
241 Ga0495628_0130473
242 Ga0495631_0017453
243 Ga0495644_0059920
244 Ga0495666_0023043
245 Ga0495640_0064425
246 Ga0495609_0005095
247 Ga0495597_0018693
248 Ga0495633_0112777
249 Ga0495668_0012642
250 Ga0495668_0040205
251 Ga0495634_0120218
252 Ga0495661_0113835
253 Ga0495657_0008893
254 Ga0495623_0146563
255 Ga0495613_0011579
256 Ga0495613_0054146
257 Ga0495649_0012663
258 Ga0495589_0012966
259 Ga0495589_0062516
260 Ga0495636_0008405
261 Ga0495636_0048079
262 Ga0495636_0138068
263 Ga0495636_0187555
264 Ga0495676_0063570
265 Ga0495676_0097839
266 Ga0495687_038642
267 Ga0495675_0037309
268 Ga0495685_003013
269 Ga0495685_011233
270 Ga0495685_070992
271 Ga0495681_0083855
272 Ga0495626_0062496
273 Ga0496108_0066107
274 Ga0501033_0024027
275 Ga0501034_0094484
276 Ga0501036_0266802
277 Ga0501038_0038165
278 Ga0501038_0240228
279 Ga0501047_0000068
280 Ga0501047_0342035
281 Ga0501047_0353649
282 Ga0501048_0062777
283 Ga0501035_0093825
284 Ga0501035_0121081
285 Ga0501035_0188303
286 Ga0501035_0279332
287 Ga0501044_0010943
288 Ga0501044_0285296
289 Ga0501045_0236537
290 nmdc:mga03n38_306329_c1
291 nmdc:mga0yw44_135301_c1
292 nmdc:mga06z11_3814_c1
293 2585314176
294 2616694201
295 2623589084
296 2644435700
297 2644629474
298 2676482339
299 2768645223
300 2804844311
301 2808840509
302 2808919088
303 2812359673
304 2812481797
305 2852638345
306 2861523210
307 2862288776
308 2862295090
309 2867349107
310 2868093597
311 2912721721
312 2912725571
313 2912759423
314 2919473045
315 2935396794
316 2946066236
317 2946074505
318 2954004447
319 2954698707
320 2954703515
321 2996228428
322 2997458634
323 3006327447
324 3006396515
325 3006489513
326 8008580167
327 8025417026
328 8056831140

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03328

HpcH_HpaI

HpcH/HpaI aldolase/citrate lyase family

17

259

0.91

PF15617

C-C_Bond_Lyase

C-C_Bond_Lyase of the TIM-Barrel fold

213

306

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qll-assembly1.cif.gz_A crystal structure of ripc from yersinia pestis 0.9181 5 227
4l9y-assembly1.cif.gz_B crystal structure of rhodobacter sphaeroides malyl-coa lyase in complex with magnesium, glyoxylate, and propionyl-coa 0.9073 3 222
1sgj-assembly1.cif.gz_C crystal structure of citrate lyase beta subunit 0.9018 4 220
5vxc-assembly1.cif.gz_A crystal structure analysis of human clybl in complex with free coash 0.8956 4 266
3qll-assembly1.cif.gz_A crystal structure of ripc from yersinia pestis 0.8935 5 227
ID Description Score Start End Superfamily
3qllC00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.923 5 227 3.20.20.60
af_Q54Q74_39_346_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9214 4 266 3.20.20.60
af_P0A9I1_3_299_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9166 3 266 3.20.20.60
af_P9WPE1_223_273_1.10.287.10 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;S15/NS1, RNA-binding 0.9136 222 264 1.10.287.10
4l9yB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9073 3 222 3.20.20.60
ID Description Score Start End GO Terms
AF-A0A0J6XFR5-F1-model_v4 Citrate lyase subunit beta 0.9833 4 233 GO:0000287
GO:0006107
GO:0016829
AF-A0A6B2TI67-F1-model_v4 CoA ester lyase 0.9771 1 95 GO:0000287
GO:0006107
GO:0016829
AF-A0A1W7D6B9-F1-model_v4 CoA ester lyase 0.9763 6 269 GO:0000287
GO:0006107
GO:0016829
AF-A0A101PWX4-F1-model_v4 deleted 0.9758 5 266
AF-A0A0L0KK30-F1-model_v4 Citrate lyase subunit beta 0.9735 1 269 GO:0000287
GO:0006107
GO:0016829

Map