F239816

General Info

Members Datasets Scaffolds Average Seq Length
162 124 136 335

Family's Representative Sequence

Representative Sequence 3300038443|Ga0395901_0027570|Ga0395901_0027570_798_1961
Length 387
Sequence MTSEPTRSGDAYPAPPEHAPGDVVVGREGSARASSSALPGTHPDNAGHGGTRPGRLLMPPEWAPQDRIWMAFPAPGYSLGDTAEEAAEARATWAGVANACAAFEPVTVVVDPAEATAARAVLDSQVEIVEAPLNDAWMRDMGPTFVHRPDGSVAGVDWVFNGWGQCDWATWDRDERIGSFVCETAGVARIGSPMVNEGGAIHVDGTGVVLVTETVQLGQGRNEDWTKEQVEAELARTIGSTEVFWLPRGLTRDYERYGTRGHVDIVATFTSPGRVLLHTQRAPEHPDHEVSRSLHALLAERFEVVELPAPATLTDAEGWVDWSYVNHLVVNGGVIACSFDDPHDAEAIAILREAYPDREVVAVDARPLFDRGGGIHCITQQQPSPRA

Samples

Sample ID Description Type Environment
1 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
2 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
3 2643221711 Terrabacter sp. Root85 Isolate Unclassified
4 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
5 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
6 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
7 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
8 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
9 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
10 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
11 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
12 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
13 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
14 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
15 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
16 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
17 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
18 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
19 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
20 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
21 2922554459 Rhodococcus sp. 66b Isolate Unclassified
22 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
23 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
24 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
25 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
26 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
27 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
28 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
31 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
38 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
41 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
62 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
63 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
64 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
65 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
66 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
72 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
73 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
74 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
75 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
76 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
77 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
78 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
83 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
84 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
85 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
86 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
87 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
88 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
89 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
92 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
93 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
94 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
98 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
99 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
100 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
101 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
104 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
105 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
106 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
107 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
121 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
122 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
123 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
124 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.95
Metatranscriptomes 0
Isolates 16.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.56
Nodule 0
Rhizoplane 17.28
Rhizosphere 54.32
Stem 0
Stem Tuber 0
Unclassified 22.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10005924 3300002067 Bacteria 4039
2 rootH2_10222890 3300003320 Bacteria 3760
3 Ga0055527_1000025 3300003760 Bacteria 195817
4 Ga0055540_1001029 3300003792 Bacteria 17869
5 Ga0070683_100368118 3300005329 Bacteria 1369
6 Ga0070668_100021228 3300005347 Bacteria 4909
7 Ga0070669_100025723 3300005353 Bacteria 4228
8 Ga0070667_100000666 3300005367 Bacteria 33290
9 Ga0068859_100017231 3300005617 Bacteria 7255
10 Ga0068863_100000277 3300005841 Bacteria 53361
11 Ga0068858_100080236 3300005842 Bacteria 3032
12 Ga0068860_100000044 3300005843 Bacteria 225595
13 Ga0068862_100000003 3300005844 Bacteria 369793
14 Ga0075364_10038783 3300006051 Bacteria 3087
15 Ga0075370_10147259 3300006353 Bacteria 1379
16 Ga0097620_100017231 3300006931 Bacteria 7255
17 Ga0105244_10095994 3300009036 Bacteria 1454
18 Ga0105247_10000006 3300009101 Bacteria 416061
19 Ga0105248_10000062 3300009177 Bacteria 124366
20 Ga0105249_10000008 3300009553 Bacteria 341271
21 Ga0105246_10000539 3300011119 Bacteria 20755
22 Ga0157371_10004501 3300013102 Bacteria 12146
23 Ga0163162_10049763 3300013306 Bacteria 4201
24 Ga0157375_10051386 3300013308 Bacteria 4047
25 Ga0163163_10020498 3300014325 Bacteria 6227
26 Ga0157379_10233149 3300014968 Bacteria 1669
27 Ga0209563_100229 3300025230 Bacteria 27477
28 Ga0209051_1001270 3300025303 Bacteria 22522
29 Ga0207710_10000025 3300025900 Bacteria 314658
30 Ga0207711_10002407 3300025941 Bacteria 16710
31 Ga0207712_10000011 3300025961 Bacteria 412321
32 Ga0207668_10000126 3300025972 Bacteria 54346
33 Ga0207658_10000653 3300025986 Bacteria 30258
34 Ga0207703_10015748 3300026035 Bacteria 5898
35 Ga0207641_10002285 3300026088 Bacteria 17857
36 Ga0268265_10000010 3300028380 Bacteria 370129
37 Ga0268264_10000007 3300028381 Bacteria 815790
38 Ga0316575_10015077 3300031665 Bacteria 2911
39 Ga0316579_10006795 3300031691 Bacteria 4686
40 Ga0316577_10019358 3300031733 Bacteria 3766
41 Ga0316574_0006035 3300035398 Bacteria 6509
42 Ga0316574_0008919 3300035398 Bacteria 5596
43 Ga0316584_0039518 3300036712 Bacteria 3512
44 Ga0316584_0264871 3300036712 Bacteria 1252
45 Ga0395899_0004087 3300037312 Bacteria 11490
46 Ga0395899_0010200 3300037312 Bacteria 7199
47 Ga0395900_0001829 3300037418 Bacteria 24258
48 Ga0395898_0000100 3300037466 Bacteria 226446
49 Ga0395905_0058868 3300037471 Bacteria 3592
50 Ga0395905_0219650 3300037471 Bacteria 1779
51 Ga0395901_0027570 3300038443 Bacteria 5838
52 Ga0439461_0005151 3300041410 Bacteria 2217
53 Ga0439461_0007603 3300041410 Bacteria 1924
54 Ga0439465_0000467 3300041413 Bacteria 11943
55 Ga0451795_0816134 3300041456 Bacteria 1209
56 Ga0451807_0534029 3300041486 Bacteria 1687
57 Ga0451841_1043469 3300041498 Bacteria 1336
58 Ga0439431_0004221 3300041997 Bacteria 3153
59 Ga0439433_0008134 3300041999 Bacteria 2271
60 Ga0439442_017921 3300042002 Bacteria 1463
61 Ga0466972_0005306 3300044658 Bacteria 6452
62 Ga0466972_0056199 3300044658 Bacteria 1892
63 Ga0466965_0021020 3300044683 Bacteria 3139
64 Ga0466965_0049986 3300044683 Bacteria 2072
65 Ga0466961_0115397 3300044693 Bacteria 1688
66 Ga0466964_0029437 3300044706 Bacteria 2168
67 Ga0466968_0027102 3300044735 Bacteria 2356
68 Ga0466968_0061065 3300044735 Bacteria 1625
69 Ga0466970_0023125 3300044765 Bacteria 3244
70 Ga0466970_0034442 3300044765 Bacteria 2681
71 Ga0466970_0063013 3300044765 Bacteria 1988
72 Ga0466960_0006391 3300044901 Bacteria 4727
73 Ga0466967_0162487 3300045976 Bacteria 2097
74 Ga0466967_0189152 3300045976 Bacteria 1945
75 Ga0466967_0252369 3300045976 Bacteria 1685
76 Ga0466967_0276330 3300045976 Bacteria 1611
77 Ga0466967_0537999 3300045976 Bacteria 1149
78 Ga0495686_0176050 3300047472 Bacteria 1242
79 Ga0496100_0028554 3300048903 Bacteria 3442
80 Ga0496100_0346848 3300048903 Bacteria 1120
81 Ga0496101_0055331 3300048904 Bacteria 2866
82 Ga0496101_0112177 3300048904 Bacteria 2054
83 Ga0496102_0000402 3300048905 Bacteria 50427
84 Ga0496102_0345227 3300048905 Bacteria 1402
85 Ga0496103_0000391 3300048906 Bacteria 39061
86 Ga0496103_0147059 3300048906 Bacteria 1509
87 Ga0496104_0081051 3300048907 Bacteria 3094
88 Ga0496104_0114858 3300048907 Bacteria 2583
89 Ga0496104_0177604 3300048907 Bacteria 2039
90 Ga0496104_0215115 3300048907 Bacteria 1834
91 Ga0496105_0010789 3300048908 Bacteria 7195
92 Ga0496105_0012678 3300048908 Bacteria 6676
93 Ga0496105_0200837 3300048908 Bacteria 1627
94 Ga0496107_0047008 3300048910 Bacteria 3107
95 Ga0496107_0099363 3300048910 Bacteria 2132
96 Ga0496108_0060794 3300048911 Bacteria 3179
97 Ga0496108_0565603 3300048911 Bacteria 991
98 Ga0496110_0106804 3300048913 Bacteria 2512
99 Ga0496111_0010254 3300048914 Bacteria 6278
100 Ga0496114_0015629 3300048917 Bacteria 6104
101 Ga0496114_0095133 3300048917 Bacteria 2534
102 Ga0496114_0141322 3300048917 Bacteria 2084
103 Ga0496114_0218413 3300048917 Bacteria 1673
104 Ga0496114_0238435 3300048917 Bacteria 1599
105 Ga0496116_0009856 3300048919 Bacteria 8083
106 Ga0496117_0004131 3300048920 Bacteria 16247
107 Ga0496118_0016227 3300048921 Bacteria 6841
108 Ga0496120_0011094 3300048923 Bacteria 6220
109 Ga0496120_0147056 3300048923 Bacteria 1189
110 Ga0496121_0000311 3300048924 Bacteria 101361
111 Ga0496121_0254094 3300048924 Bacteria 1217
112 Ga0496122_0026378 3300048925 Bacteria 5011
113 Ga0496122_0026667 3300048925 Bacteria 4972
114 Ga0496122_0063328 3300048925 Bacteria 2699
115 Ga0496123_0009852 3300048926 Bacteria 8533
116 Ga0496124_0084968 3300048927 Bacteria 2594
117 Ga0496125_0008386 3300048928 Bacteria 10828
118 Ga0496125_0036429 3300048928 Bacteria 4296
119 Ga0496125_0041240 3300048928 Bacteria 3949
120 Ga0496126_0000162 3300048929 Bacteria 153331
121 Ga0496126_0004799 3300048929 Bacteria 15886
122 Ga0496126_0026381 3300048929 Bacteria 5571
123 Ga0501032_0085129 3300049569 Bacteria 2102
124 Ga0501033_0042546 3300049570 Bacteria 3387
125 Ga0501034_0007155 3300049571 Bacteria 11908
126 Ga0501037_0021855 3300049573 Bacteria 4735
127 Ga0501038_0011896 3300049574 Bacteria 7942
128 Ga0501046_0042967 3300049580 Bacteria 3601
129 Ga0501047_0004573 3300049581 Bacteria 13013
130 Ga0501048_0080374 3300049582 Bacteria 2300
131 Ga0501070_0000664 3300049586 Bacteria 31757
132 Ga0501073_0127215 3300049589 Bacteria 1766
133 Ga0501035_0006942 3300049822 Bacteria 10578
134 nmdc:mga00v17_12536_c1 3300050491 Bacteria 4680
135 nmdc:mga07m45_229201_c1 3300050496 Bacteria 1081
136 Ga0500620_000258 3300053155 Bacteria 10337

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048911 Ga0496108_0565603 Ga0496108_0565603_105_965 258
2 3300045976 Ga0466967_0162487 Ga0466967_0162487_31_870 279
3 3300048907 Ga0496104_0177604 Ga0496104_0177604_1037_2011 296
4 3300048908 Ga0496105_0200837 Ga0496105_0200837_85_1059 296
5 3300048904 Ga0496101_0112177 Ga0496101_0112177_584_1558 297
6 3300048917 Ga0496114_0238435 Ga0496114_0238435_66_1040 297
7 3300013306 Ga0163162_10049763 Ga0163162_100497632 308
8 3300048917 Ga0496114_0095133 Ga0496114_0095133_1453_2463 308
9 3300048903 Ga0496100_0346848 Ga0496100_0346848_64_1077 313
10 3300048907 Ga0496104_0081051 Ga0496104_0081051_605_1681 313
11 3300048908 Ga0496105_0012678 Ga0496105_0012678_4915_5991 313
12 3300048910 Ga0496107_0099363 Ga0496107_0099363_1018_2094 313
13 3300048917 Ga0496114_0141322 Ga0496114_0141322_931_2007 313
14 3300041498 Ga0451841_1043469 Ga0451841_1043469_339_1313 317
15 3300044693 Ga0466961_0115397 Ga0466961_0115397_133_1089 318
16 3300044765 Ga0466970_0063013 Ga0466970_0063013_726_1682 318
17 3300045976 Ga0466967_0189152 Ga0466967_0189152_873_1829 318
18 3300048924 Ga0496121_0254094 Ga0496121_0254094_170_1126 318
19 3300049569 Ga0501032_0085129 Ga0501032_0085129_452_1438 318
20 3300049571 Ga0501034_0007155 Ga0501034_0007155_4329_5315 318
21 3300049573 Ga0501037_0021855 Ga0501037_0021855_3193_4179 318
22 3300049574 Ga0501038_0011896 Ga0501038_0011896_3361_4347 318
23 3300049580 Ga0501046_0042967 Ga0501046_0042967_356_1342 318
24 3300049581 Ga0501047_0004573 Ga0501047_0004573_5958_6944 318
25 3300049582 Ga0501048_0080374 Ga0501048_0080374_508_1494 318
26 3300049589 Ga0501073_0127215 Ga0501073_0127215_477_1463 318
27 3300049822 Ga0501035_0006942 Ga0501035_0006942_3635_4621 318
28 3300005842 Ga0068858_100080236 Ga0068858_1000802362 322
29 3300035398 Ga0316574_0008919 Ga0316574_0008919_2721_3710 323
30 3300036712 Ga0316584_0039518 Ga0316584_0039518_385_1374 323
31 3300048907 Ga0496104_0114858 Ga0496104_0114858_604_1578 323
32 3300035398 Ga0316574_0006035 Ga0316574_0006035_1230_2222 324
33 3300036712 Ga0316584_0264871 Ga0316584_0264871_231_1223 324
34 3300048917 Ga0496114_0218413 Ga0496114_0218413_259_1236 325
35 3300049570 Ga0501033_0042546 Ga0501033_0042546_1614_2621 325
36 3300044735 Ga0466968_0061065 Ga0466968_0061065_43_1029 328
37 3300048923 Ga0496120_0147056 Ga0496120_0147056_169_1155 328
38 3300037471 Ga0395905_0058868 Ga0395905_0058868_1329_2318 329
39 3300041410 Ga0439461_0005151 Ga0439461_0005151_599_1588 329
40 3300041413 Ga0439465_0000467 Ga0439465_0000467_7908_8897 329
41 3300041456 Ga0451795_0816134 Ga0451795_0816134_37_1026 329
42 3300044658 Ga0466972_0005306 Ga0466972_0005306_3189_4181 330
43 3300044706 Ga0466964_0029437 Ga0466964_0029437_993_1985 330
44 3300045976 Ga0466967_0537999 Ga0466967_0537999_102_1100 330
45 3300048906 Ga0496103_0147059 Ga0496103_0147059_65_1057 330
46 3300048929 Ga0496126_0000162 Ga0496126_0000162_123831_124823 330
47 3300009101 Ga0105247_10000006 Ga0105247_1000000694 331
48 3300009177 Ga0105248_10000062 Ga0105248_100000624 331
49 3300009553 Ga0105249_10000008 Ga0105249_10000008316 331
50 3300014325 Ga0163163_10020498 Ga0163163_100204984 331
51 3300014968 Ga0157379_10233149 Ga0157379_102331492 331
52 3300044765 Ga0466970_0034442 Ga0466970_0034442_815_1831 331
53 3300045976 Ga0466967_0276330 Ga0466967_0276330_591_1592 331
54 3300048903 Ga0496100_0028554 Ga0496100_0028554_2278_3273 331
55 3300048905 Ga0496102_0000402 Ga0496102_0000402_45308_46303 331
56 3300048906 Ga0496103_0000391 Ga0496103_0000391_4170_5165 331
57 3300048910 Ga0496107_0047008 Ga0496107_0047008_1370_2365 331
58 3300048919 Ga0496116_0009856 Ga0496116_0009856_2659_3654 331
59 3300048920 Ga0496117_0004131 Ga0496117_0004131_11057_12052 331
60 3300048921 Ga0496118_0016227 Ga0496118_0016227_4196_5191 331
61 3300048923 Ga0496120_0011094 Ga0496120_0011094_2210_3205 331
62 3300048924 Ga0496121_0000311 Ga0496121_0000311_1663_2658 331
63 3300048928 Ga0496125_0041240 Ga0496125_0041240_218_1213 331
64 3300048929 Ga0496126_0026381 Ga0496126_0026381_2332_3327 331
65 3300041410 Ga0439461_0007603 Ga0439461_0007603_115_1116 333
66 3300041997 Ga0439431_0004221 Ga0439431_0004221_142_1143 333
67 3300042002 Ga0439442_017921 Ga0439442_017921_397_1398 333
68 3300044658 Ga0466972_0056199 Ga0466972_0056199_16_1017 333
69 3300044683 Ga0466965_0021020 Ga0466965_0021020_1228_2229 333
70 3300044735 Ga0466968_0027102 Ga0466968_0027102_254_1255 333
71 3300044765 Ga0466970_0023125 Ga0466970_0023125_1621_2622 333
72 3300044901 Ga0466960_0006391 Ga0466960_0006391_3685_4686 333
73 3300045976 Ga0466967_0252369 Ga0466967_0252369_89_1090 333
74 3300050491 nmdc:mga00v17_12536_c1 nmdc:mga00v17_12536_c1_1777_2802 333
75 3300038443 Ga0395901_0027570 Ga0395901_0027570_798_1961 334
76 3300048925 Ga0496122_0026667 Ga0496122_0026667_358_1386 334
77 3300048927 Ga0496124_0084968 Ga0496124_0084968_872_1900 334
78 3300048928 Ga0496125_0008386 Ga0496125_0008386_383_1411 334
79 iso_pu_bacteria 2902810491 2902811451 334
80 iso_pu_bacteria 8002811521 8002813636 334
81 3300013308 Ga0157375_10051386 Ga0157375_100513865 335
82 3300037471 Ga0395905_0219650 Ga0395905_0219650_65_1084 335
83 3300048907 Ga0496104_0215115 Ga0496104_0215115_536_1543 335
84 3300048908 Ga0496105_0010789 Ga0496105_0010789_5866_6873 335
85 3300048913 Ga0496110_0106804 Ga0496110_0106804_1318_2325 335
86 3300048914 Ga0496111_0010254 Ga0496111_0010254_526_1533 335
87 3300048917 Ga0496114_0015629 Ga0496114_0015629_3997_5004 335
88 iso_pu_bacteria 2751185725 2753035990 335
89 iso_pu_bacteria 2751185792 2753325985 335
90 iso_pu_bacteria 2738543034 2739366454 336
91 3300048904 Ga0496101_0055331 Ga0496101_0055331_556_1569 337
92 3300048925 Ga0496122_0063328 Ga0496122_0063328_252_1265 337
93 3300048926 Ga0496123_0009852 Ga0496123_0009852_4669_5682 337
94 3300048929 Ga0496126_0004799 Ga0496126_0004799_3061_4074 337
95 iso_pu_bacteria 2565956761 2566992161 337
96 iso_pu_bacteria 2738541308 2738888349 337
97 iso_pu_bacteria 2904535858 2904538017 337
98 iso_pu_bacteria 2922554459 2922557200 337
99 iso_pu_bacteria 2977264416 2977265392 337
100 3300013102 Ga0157371_10004501 Ga0157371_1000450114 338
101 iso_pu_bacteria 2902837492 2902841029 338
102 3300031691 Ga0316579_10006795 Ga0316579_100067953 339
103 3300031733 Ga0316577_10019358 Ga0316577_100193582 339
104 iso_pu_bacteria 2643221711 2644607546 339
105 iso_pu_bacteria 2811994882 2812373695 339
106 iso_pu_bacteria 2818991458 2819665343 339
107 iso_pu_bacteria 2818991462 2819691445 339
108 iso_pu_bacteria 2818991469 2819727518 339
109 iso_pu_bacteria 2902837492 2902839706 339
110 3300006353 Ga0075370_10147259 Ga0075370_101472591 340
111 3300041486 Ga0451807_0534029 Ga0451807_0534029_189_1262 340
112 3300041999 Ga0439433_0008134 Ga0439433_0008134_49_1089 340
113 3300050496 nmdc:mga07m45_229201_c1 nmdc:mga07m45_229201_c1_29_1051 340
114 iso_pu_bacteria 2811994872 2812324532 340
115 3300048911 Ga0496108_0060794 Ga0496108_0060794_1635_2660 341
116 iso_pu_bacteria 2643221687 2644490473 341
117 iso_pu_bacteria 2808606306 2808628894 341
118 iso_pu_bacteria 2808606447 2809226328 342
119 3300005329 Ga0070683_100368118 Ga0070683_1003681181 343
120 3300048928 Ga0496125_0036429 Ga0496125_0036429_3174_4241 343
121 3300009036 Ga0105244_10095994 Ga0105244_100959941 344
122 3300025230 Ga0209563_100229 Ga0209563_1002296 344
123 3300037312 Ga0395899_0010200 Ga0395899_0010200_4638_5672 344
124 3300037418 Ga0395900_0001829 Ga0395900_0001829_1802_2836 344
125 3300037466 Ga0395898_0000100 Ga0395898_0000100_126892_127926 344
126 3300048905 Ga0496102_0345227 Ga0496102_0345227_338_1372 344
127 3300049586 Ga0501070_0000664 Ga0501070_0000664_15161_16195 344
128 3300053155 Ga0500620_000258 Ga0500620_000258_624_1751 344
129 iso_pu_bacteria 2919443155 2919445172 344
130 iso_pu_bacteria 2935409751 2935411712 344
131 3300003792 Ga0055540_1001029 Ga0055540_100102913 345
132 3300025303 Ga0209051_1001270 Ga0209051_100127019 345
133 3300031665 Ga0316575_10015077 Ga0316575_100150774 345
134 3300003320 rootH2_10222890 rootH2_102228902 346
135 3300005353 Ga0070669_100025723 Ga0070669_1000257232 346
136 3300011119 Ga0105246_10000539 Ga0105246_100005398 346
137 3300047472 Ga0495686_0176050 Ga0495686_0176050_89_1129 346
138 3300048925 Ga0496122_0026378 Ga0496122_0026378_1729_2805 346
139 iso_pu_bacteria 2852677369 2852678493 346
140 iso_pu_bacteria 2897561785 2897561880 346
141 3300005347 Ga0070668_100021228 Ga0070668_1000212283 347
142 3300005367 Ga0070667_100000666 Ga0070667_1000006664 347
143 3300005617 Ga0068859_100017231 Ga0068859_1000172313 347
144 3300005841 Ga0068863_100000277 Ga0068863_10000027753 347
145 3300005843 Ga0068860_100000044 Ga0068860_1000000444 347
146 3300005844 Ga0068862_100000003 Ga0068862_100000003227 347
147 3300006931 Ga0097620_100017231 Ga0097620_1000172314 347
148 3300025900 Ga0207710_10000025 Ga0207710_10000025193 347
149 3300025941 Ga0207711_10002407 Ga0207711_100024072 347
150 3300025961 Ga0207712_10000011 Ga0207712_100000115 347
151 3300025972 Ga0207668_10000126 Ga0207668_1000012620 347
152 3300025986 Ga0207658_10000653 Ga0207658_100006534 347
153 3300026035 Ga0207703_10015748 Ga0207703_100157484 347
154 3300026088 Ga0207641_10002285 Ga0207641_100022853 347
155 3300028380 Ga0268265_10000010 Ga0268265_10000010224 347
156 3300028381 Ga0268264_10000007 Ga0268264_10000007758 347
157 3300003760 Ga0055527_1000025 Ga0055527_1000025131 349
158 3300006051 Ga0075364_10038783 Ga0075364_100387832 349
159 3300002067 JGI24735J21928_10005924 JGI24735J21928_100059242 350
160 3300037312 Ga0395899_0004087 Ga0395899_0004087_620_1693 350
161 3300044683 Ga0466965_0049986 Ga0466965_0049986_904_1977 350
162 iso_pu_bacteria 8056037122 8056040516 350

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04371

PAD_porph

Porphyromonas-type peptidyl-arginine deiminase

57

383

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6nic-assembly2.cif.gz_C crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9292 3 341
2q3u-assembly2.cif.gz_B ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase 0.9285 2 341
6nib-assembly1.cif.gz_A-2 crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) 0.9265 3 341
6nic-assembly1.cif.gz_B crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.924 3 341
3h7k-assembly1.cif.gz_A crystal structure of arabidopsis thaliana agmatine deiminase complexed with a covalently bound reaction intermediate 0.9229 2 345
ID Description Score Start End Superfamily
3hvmA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9135 3 339 3.75.10.10
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9067 2 345 3.75.10.10
3hvmA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9055 3 339 3.75.10.10
6b10B00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.8989 1 344 3.75.10.10
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.8891 2 345 3.75.10.10
ID Description Score Start End GO Terms
AF-A0A543BJ17-F1-model_v4 Agmatine deiminase 0.9949 1 341 GO:0004668
GO:0009446
GO:0047632
AF-A0A5R8L401-F1-model_v4 Agmatine deiminase family protein 0.9945 1 344 GO:0004668
GO:0009446
GO:0047632
AF-A0A5C1Y992-F1-model_v4 Agmatine deiminase family protein 0.9932 1 346 GO:0004668
GO:0009446
GO:0047632
AF-A0A5R8L401-F1-model_v4 Agmatine deiminase family protein 0.9916 1 344 GO:0004668
GO:0009446
GO:0047632
AF-A0A6M0QXM5-F1-model_v4 Agmatine deiminase family protein 0.9911 1 343 GO:0004668
GO:0009446
GO:0047632

Feature Viewer

pLDDT pTM Quality
92.45 0.91 High
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Predicted Structure (AlphaFold2)

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