F238820

General Info

Members Datasets Scaffolds Average Seq Length
162 132 324 171

Family's Representative Sequence

Representative Sequence 3300005548|Ga0070665_100805954|Ga0070665_1008059542
Length 169
Sequence MITFTTIIKKFDDHGDKTGWTYIEVPADIAGQLNPENKKGFRVKGKLDNYAIQGISLIPMGGGQYILAVNATIRKGLKKNKGAMVKVQLALDKPYELSKELMDCLSDEPTALKFFNSLPRAHQNYFSKWIESAKTESTRAKRIAMTVSATAKKWGFGEMIRASKKDDQD

Samples

Sample ID Description Type Environment
1 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
10 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
11 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
12 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
15 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
16 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
17 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
21 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
79 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
83 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
84 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
85 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
86 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
87 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
88 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
89 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
90 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
91 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
92 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
93 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
94 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
95 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
96 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
97 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
98 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
107 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
110 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
113 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
119 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
120 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
121 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
122 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
123 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
124 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
125 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
126 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
127 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
128 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
129 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
130 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
131 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
132 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.38
Metatranscriptomes 0
Isolates 0.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.99
Nodule 0
Rhizoplane 3.09
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 16.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070665_100805954 3300005548 Bacteria 952
2 SwRhRL2b_contig_3278702 2162886007 Unclassified 1019
3 JGI25153J46596_10020524 3300003215 Bacteria 2496
4 JGI25153J46596_10063286 3300003215 Bacteria 992
5 rootH1_10188728 3300003316 Unclassified 2240
6 rootH2_10125542 3300003320 Bacteria 5223
7 rootH2_10174709 3300003320 Unclassified 2926
8 rootL2_10108177 3300003322 Bacteria 1477
9 rootL2_10157981 3300003322 Bacteria 1448
10 rootL2_10278788 3300003322 Bacteria 1975
11 rootH1_10089431 3300003323 Bacteria 6466
12 rootH1_10092777 3300003323 Bacteria 4918
13 JGI25160J50197_1011761 3300003354 Bacteria 3077
14 Ga0055526_1016672 3300003771 Bacteria 2857
15 Ga0055528_1000105 3300003790 Bacteria 67910
16 Ga0055531_10030036 3300003794 Bacteria 1836
17 Ga0055543_1008779 3300004625 Bacteria 2215
18 Ga0065165_1000168 3300005262 Bacteria 115574
19 Ga0065704_10165181 3300005289 Unclassified 1327
20 Ga0070670_100101370 3300005331 Bacteria 2479
21 Ga0068869_100015220 3300005334 Bacteria 5155
22 Ga0068869_100237139 3300005334 Unclassified 1452
23 Ga0070682_100084991 3300005337 Bacteria 2057
24 Ga0070668_100050812 3300005347 Bacteria 3193
25 Ga0070675_100501169 3300005354 Bacteria 1094
26 Ga0070671_100992679 3300005355 Bacteria 735
27 Ga0070674_100468272 3300005356 Bacteria 1043
28 Ga0070667_101120131 3300005367 Bacteria 736
29 Ga0068867_100155793 3300005459 Bacteria 1798
30 Ga0070698_100009662 3300005471 Bacteria 10319
31 Ga0070698_100018803 3300005471 Bacteria 7270
32 Ga0068853_101504206 3300005539 Bacteria 652
33 Ga0068855_100877600 3300005563 Bacteria 949
34 Ga0068856_100034821 3300005614 Bacteria 4934
35 Ga0068856_100358434 3300005614 Unclassified 1477
36 Ga0068861_100037842 3300005719 Bacteria 3588
37 Ga0068870_10195092 3300005840 Bacteria 1224
38 Ga0068862_100381965 3300005844 Bacteria 1314
39 Ga0075366_10438298 3300006195 Bacteria 806
40 Ga0097621_100575939 3300006237 Unclassified 1027
41 Ga0068871_100490089 3300006358 Bacteria 1107
42 Ga0068871_101217640 3300006358 Bacteria 707
43 Ga0075434_101480084 3300006871 Bacteria 688
44 Ga0068865_101440140 3300006881 Unclassified 616
45 Ga0105240_10160378 3300009093 Bacteria 2672
46 Ga0105240_10175654 3300009093 Bacteria 2532
47 Ga0114129_10008444 3300009147 Bacteria 14674
48 Ga0105241_10018842 3300009174 Bacteria 5085
49 Ga0105237_10015829 3300009545 Bacteria 7845
50 Ga0105237_10633617 3300009545 Bacteria 1076
51 Ga0105249_10185346 3300009553 Unclassified 2028
52 Ga0105249_10279809 3300009553 Bacteria 1666
53 Ga0105239_10001576 3300010375 Bacteria 30132
54 Ga0157373_10055774 3300013100 Bacteria 2807
55 Ga0157371_10224536 3300013102 Bacteria 1349
56 Ga0157369_10533801 3300013105 Bacteria 1213
57 Ga0157374_10030627 3300013296 Bacteria 4887
58 Ga0163162_11999479 3300013306 Unclassified 664
59 Ga0157372_10419132 3300013307 Unclassified 1560
60 Ga0163163_10090458 3300014325 Bacteria 3074
61 Ga0163163_10179846 3300014325 Bacteria 2162
62 Ga0157380_10832665 3300014326 Bacteria 943
63 Ga0157380_12280652 3300014326 Bacteria 606
64 Ga0157377_10476708 3300014745 Bacteria 867
65 Ga0157376_10120905 3300014969 Bacteria 2321
66 Ga0157376_10769556 3300014969 Bacteria 973
67 Ga0163161_10222885 3300017792 Bacteria 1461
68 Ga0209258_106253 3300025242 Bacteria 1893
69 Ga0209673_1000107 3300025273 Bacteria 184825
70 Ga0209564_1005186 3300025295 Bacteria 7556
71 Ga0209564_1009132 3300025295 Bacteria 4769
72 Ga0209564_1041564 3300025295 Bacteria 1232
73 Ga0209758_1003433 3300025297 Bacteria 14433
74 Ga0209758_1023736 3300025297 Bacteria 2761
75 Ga0209050_1000476 3300025298 Bacteria 70845
76 Ga0207426_1001462 3300025302 Bacteria 19541
77 Ga0209257_1012011 3300025304 Unclassified 4072
78 Ga0207643_10373209 3300025908 Bacteria 898
79 Ga0207705_10091242 3300025909 Unclassified 2231
80 Ga0207695_10147897 3300025913 Bacteria 2291
81 Ga0207650_10078458 3300025925 Bacteria 2498
82 Ga0207704_10373718 3300025938 Unclassified 1117
83 Ga0207689_10011431 3300025942 Bacteria 7608
84 Ga0207689_10176418 3300025942 Unclassified 1762
85 Ga0207667_10003614 3300025949 Bacteria 19078
86 Ga0207712_10446190 3300025961 Bacteria 1096
87 Ga0207712_10570364 3300025961 Unclassified 975
88 Ga0207639_10078505 3300026041 Bacteria 2606
89 Ga0207702_10247022 3300026078 Bacteria 1674
90 Ga0207675_101159409 3300026118 Bacteria 793
91 Ga0207683_10135440 3300026121 Unclassified 2217
92 Ga0268266_10312415 3300028379 Bacteria 1469
93 Ga0268265_10161339 3300028380 Bacteria 1905
94 Ga0268264_10186281 3300028381 Bacteria 1889
95 Ga0268264_10482030 3300028381 Unclassified 1206
96 Ga0307513_10481952 3300031456 Bacteria 960
97 Ga0307509_10034110 3300031507 Bacteria 5595
98 Ga0307516_10662805 3300031730 Bacteria 699
99 Ga0307415_101714568 3300032126 Unclassified 606
100 Ga0373937_1073898 3300036401 Unclassified 754
101 Ga0395905_0000340 3300037471 Bacteria 66412
102 Ga0436365_1696056 3300039437 Unclassified 1199
103 Ga0451791_1132473 3300041451 Bacteria 929
104 Ga0451797_0542397 3300041453 Bacteria 1128
105 Ga0451800_1373564 3300041459 Unclassified 745
106 Ga0451802_0156069 3300041460 Bacteria 742
107 Ga0451802_0437432 3300041460 Bacteria 1093
108 Ga0451847_0955983 3300041503 Unclassified 645
109 Ga0451851_0418904 3300041507 Bacteria 642
110 Ga0451853_2399135 3300041512 Bacteria 1583
111 Ga0466969_0001692 3300044656 Bacteria 11786
112 Ga0453683_0241919 3300044673 Bacteria 1150
113 Ga0466966_0007346 3300044684 Bacteria 7308
114 Ga0466964_0046110 3300044706 Unclassified 1776
115 Ga0466968_0020067 3300044735 Bacteria 2695
116 Ga0466957_0003483 3300044842 Bacteria 8645
117 Ga0466957_0130018 3300044842 Bacteria 1612
118 Ga0466959_0000399 3300045049 Bacteria 25506
119 Ga0451576_0000003 3300045051 Bacteria 1550573
120 Ga0495668_0000785 3300046616 Bacteria 36849
121 Ga0495672_0063768 3300047320 Bacteria 2113
122 Ga0501032_0006815 3300049569 Bacteria 8383
123 Ga0501034_0029148 3300049571 Bacteria 5611
124 Ga0501034_0812253 3300049571 Bacteria 827
125 Ga0501037_0020958 3300049573 Bacteria 4829
126 Ga0501039_0022564 3300049575 Bacteria 4832
127 Ga0501043_0053131 3300049579 Bacteria 3181
128 Ga0501046_0013781 3300049580 Bacteria 6834
129 Ga0501046_0343415 3300049580 Bacteria 1085
130 Ga0501047_0073385 3300049581 Bacteria 3294
131 Ga0501047_0169978 3300049581 Bacteria 2049
132 Ga0501047_0713913 3300049581 Bacteria 820
133 Ga0501067_0053251 3300049583 Bacteria 2242
134 Ga0501068_0383280 3300049584 Bacteria 905
135 Ga0501070_0002380 3300049586 Bacteria 16489
136 Ga0501074_0001024 3300049590 Bacteria 18175
137 Ga0501079_0925409 3300049741 Bacteria 686
138 Ga0501080_0062672 3300049742 Bacteria 3460
139 Ga0501083_0038529 3300049744 Bacteria 3249
140 Ga0501269_003454 3300049766 Unclassified 1913
141 Ga0501035_0030875 3300049822 Bacteria 4881
142 Ga0501035_0172463 3300049822 Bacteria 1868
143 Ga0501044_0051628 3300049823 Bacteria 4239
144 Ga0501044_0327227 3300049823 Bacteria 1456
145 nmdc:mga0k408_152292_c1 3300050493 Bacteria 1377
146 nmdc:mga05p37_1848_c1 3300050507 Bacteria 24665
147 nmdc:mga0n895_159160_c1 3300050512 Unclassified 2289
148 Ga0500578_0000054 3300053086 Bacteria 121082
149 Ga0500578_0038253 3300053086 Bacteria 3082
150 Ga0500646_0032842 3300053090 Bacteria 1433
151 Ga0500583_0001443 3300053092 Bacteria 6816
152 Ga0500651_0334786 3300053093 Bacteria 862
153 Ga0500556_0009497 3300053104 Bacteria 2829
154 Ga0500642_0020700 3300053130 Bacteria 2591
155 Ga0500652_062915 3300053131 Bacteria 1531
156 Ga0500568_0002667 3300053139 Bacteria 10353
157 Ga0500619_113456 3300053154 Bacteria 923
158 Ga0500636_0244553 3300053177 Bacteria 919
159 Ga0500637_0306445 3300053178 Unclassified 864
160 Ga0500645_011856 3300053730 Bacteria 2832
161 Ga0500587_008874 3300053739 Bacteria 1290
162 2911140088 2911138879 Bacteria 5811561
163 Ga0070665_100805954
164 SwRhRL2b_contig_3278702
165 JGI25153J46596_10020524
166 JGI25153J46596_10063286
167 rootH1_10188728
168 rootH2_10125542
169 rootH2_10174709
170 rootL2_10108177
171 rootL2_10157981
172 rootL2_10278788
173 rootH1_10089431
174 rootH1_10092777
175 JGI25160J50197_1011761
176 Ga0055526_1016672
177 Ga0055528_1000105
178 Ga0055531_10030036
179 Ga0055543_1008779
180 Ga0065165_1000168
181 Ga0065704_10165181
182 Ga0070670_100101370
183 Ga0068869_100015220
184 Ga0068869_100237139
185 Ga0070682_100084991
186 Ga0070668_100050812
187 Ga0070675_100501169
188 Ga0070671_100992679
189 Ga0070674_100468272
190 Ga0070667_101120131
191 Ga0068867_100155793
192 Ga0070698_100009662
193 Ga0070698_100018803
194 Ga0068853_101504206
195 Ga0068855_100877600
196 Ga0068856_100034821
197 Ga0068856_100358434
198 Ga0068861_100037842
199 Ga0068870_10195092
200 Ga0068862_100381965
201 Ga0075366_10438298
202 Ga0097621_100575939
203 Ga0068871_100490089
204 Ga0068871_101217640
205 Ga0075434_101480084
206 Ga0068865_101440140
207 Ga0105240_10160378
208 Ga0105240_10175654
209 Ga0114129_10008444
210 Ga0105241_10018842
211 Ga0105237_10015829
212 Ga0105237_10633617
213 Ga0105249_10185346
214 Ga0105249_10279809
215 Ga0105239_10001576
216 Ga0157373_10055774
217 Ga0157371_10224536
218 Ga0157369_10533801
219 Ga0157374_10030627
220 Ga0163162_11999479
221 Ga0157372_10419132
222 Ga0163163_10090458
223 Ga0163163_10179846
224 Ga0157380_10832665
225 Ga0157380_12280652
226 Ga0157377_10476708
227 Ga0157376_10120905
228 Ga0157376_10769556
229 Ga0163161_10222885
230 Ga0209258_106253
231 Ga0209673_1000107
232 Ga0209564_1005186
233 Ga0209564_1009132
234 Ga0209564_1041564
235 Ga0209758_1003433
236 Ga0209758_1023736
237 Ga0209050_1000476
238 Ga0207426_1001462
239 Ga0209257_1012011
240 Ga0207643_10373209
241 Ga0207705_10091242
242 Ga0207695_10147897
243 Ga0207650_10078458
244 Ga0207704_10373718
245 Ga0207689_10011431
246 Ga0207689_10176418
247 Ga0207667_10003614
248 Ga0207712_10446190
249 Ga0207712_10570364
250 Ga0207639_10078505
251 Ga0207702_10247022
252 Ga0207675_101159409
253 Ga0207683_10135440
254 Ga0268266_10312415
255 Ga0268265_10161339
256 Ga0268264_10186281
257 Ga0268264_10482030
258 Ga0307513_10481952
259 Ga0307509_10034110
260 Ga0307516_10662805
261 Ga0307415_101714568
262 Ga0373937_1073898
263 Ga0395905_0000340
264 Ga0436365_1696056
265 Ga0451791_1132473
266 Ga0451797_0542397
267 Ga0451800_1373564
268 Ga0451802_0156069
269 Ga0451802_0437432
270 Ga0451847_0955983
271 Ga0451851_0418904
272 Ga0451853_2399135
273 Ga0466969_0001692
274 Ga0453683_0241919
275 Ga0466966_0007346
276 Ga0466964_0046110
277 Ga0466968_0020067
278 Ga0466957_0003483
279 Ga0466957_0130018
280 Ga0466959_0000399
281 Ga0451576_0000003
282 Ga0495668_0000785
283 Ga0495672_0063768
284 Ga0501032_0006815
285 Ga0501034_0029148
286 Ga0501034_0812253
287 Ga0501037_0020958
288 Ga0501039_0022564
289 Ga0501043_0053131
290 Ga0501046_0013781
291 Ga0501046_0343415
292 Ga0501047_0073385
293 Ga0501047_0169978
294 Ga0501047_0713913
295 Ga0501067_0053251
296 Ga0501068_0383280
297 Ga0501070_0002380
298 Ga0501074_0001024
299 Ga0501079_0925409
300 Ga0501080_0062672
301 Ga0501083_0038529
302 Ga0501269_003454
303 Ga0501035_0030875
304 Ga0501035_0172463
305 Ga0501044_0051628
306 Ga0501044_0327227
307 nmdc:mga0k408_152292_c1
308 nmdc:mga05p37_1848_c1
309 nmdc:mga0n895_159160_c1
310 Ga0500578_0000054
311 Ga0500578_0038253
312 Ga0500646_0032842
313 Ga0500583_0001443
314 Ga0500651_0334786
315 Ga0500556_0009497
316 Ga0500642_0020700
317 Ga0500652_062915
318 Ga0500568_0002667
319 Ga0500619_113456
320 Ga0500636_0244553
321 Ga0500637_0306445
322 Ga0500645_011856
323 Ga0500587_008874
324 2911140088

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13376

OmdA

Bacteriocin-protection, YdeI or OmpD-Associated

94

153

0.95

PF08922

DUF1905

Domain of unknown function (DUF1905)

4

89

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2d9r-assembly1.cif.gz_A structure of conserved protein of unknown function pg0164 from porphyromonas gingivalis [w83] 0.8222 2 92
2d9r-assembly1.cif.gz_A structure of conserved protein of unknown function pg0164 from porphyromonas gingivalis [w83] 0.7966 2 92
5u6z-assembly1.cif.gz_A crystal structure of xenopus laevis apex2 c-terminal znf-grf domain 0.7189 6 23
7omk-assembly1.cif.gz_A the nmr structure of the zf-grf domains from the mouse endonuclease viii-like 3 (mneil3) 0.6924 6 26
5trd-assembly1.cif.gz_B structure of rbkr (riboflavin kinase) from thermoplasma acidophilum determined in complex with ctp and its cognate dna operator 0.5596 2 92
ID Description Score Start End Superfamily
2d9rA00 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;AF2212/PG0164-like 0.8463 2 92 2.40.30.100
2d9rA00 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;AF2212/PG0164-like 0.8191 2 92 2.40.30.100
af_Q0VGT4_1109_1153_2.20.70.10 Mainly Beta;Single Sheet;Ubiquitin Ligase Nedd4; Chain: W;; 0.7006 6 28 2.20.70.10
af_B6SN49_38_138_2.40.330.10 Mainly Beta;Beta Barrel;At1g16640 B3 domain;DNA-binding pseudobarrel domain 0.6399 2 84 2.40.330.10
af_Q851W5_393_518_2.40.330.10 Mainly Beta;Beta Barrel;At1g16640 B3 domain;DNA-binding pseudobarrel domain 0.6194 2 94 2.40.330.10
ID Description Score Start End GO Terms
AF-A0A524M643-F1-model_v4 DUF1905 domain-containing protein 0.983 1 80
AF-A0A2Z3V045-F1-model_v4 OmdA domain containing protein 0.9814 96 156
AF-A0A2P6NM94-F1-model_v4 Bacteriocin-protection protein, YdeI/OmpD-associated family 0.9798 97 157
AF-A0A652KSE8-F1-model_v4 OmdA domain containing protein 0.9773 96 156
AF-A0A4Q3PMM3-F1-model_v4 deleted 0.9737 2 96

Map