F237815

General Info

Members Datasets Scaffolds Average Seq Length
161 121 322 293

Family's Representative Sequence

Representative Sequence 3300048914|Ga0496111_0268087|Ga0496111_0268087_131_1195
Length 354
Sequence MSVDPFVDHRSLLFTVAYEMLGSAADAEDVVQETWLRWAAVDQSEVQDPRAYLVRSVTRQSLNRLRTLSRRREEYVGEWLPEPLLTSPDVAEDVELAEGVSIAMLTVLETLTPTERAVFVLREVFEVPYDEIAAAVNKSQAAVRQLAHRAREHVTARRPRMQVDRTEQQQVLEWFVAAVTAGDVQGLMDVLAPDVVLLADGGGIAQAVRVPVVGVKKVVNLLRPYPSVSVNPAIGTIRLNGAVGVRIDDEVGGTTIVSVSSRTSGSRGSSRCATRTSSPGWTRRSISPVERRPKLGLPCPRVRLGSVRLDMIATAALRSFGPERSSMERVGLVAVGPRTSVDPMVSVARRQAAD

Samples

Sample ID Description Type Environment
1 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
5 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
9 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
10 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
11 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
27 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
28 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
29 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
40 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
42 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
43 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
44 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
45 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
46 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
47 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
48 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
49 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
50 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
53 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
54 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
55 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
56 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
57 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
58 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
59 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
60 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
63 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
64 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
65 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
66 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
67 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
68 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
69 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
70 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
71 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
72 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
73 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
74 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
87 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
88 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
89 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
90 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
91 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
92 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
93 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
100 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
101 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
107 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
108 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
109 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
110 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
111 2643221641 Nocardioides sp. Root122 Isolate Unclassified
112 2671180195 Frankia sp. CcI49 Isolate Nodule
113 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
114 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
115 2773857922 Frankia sp. CcI49 Isolate Nodule
116 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
117 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
118 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
119 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
120 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
121 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.3
Metatranscriptomes 1.24
Isolates 7.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.97
Nodule 1.24
Rhizoplane 2.48
Rhizosphere 85.09
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496111_0268087 3300048914 Bacteria 1267
2 Ga0070658_10156835 3300005327 Bacteria 1908
3 Ga0070683_100119747 3300005329 Bacteria 2486
4 Ga0070674_100394083 3300005356 Bacteria 1130
5 Ga0070663_100094335 3300005455 Bacteria 2222
6 Ga0070681_10352701 3300005458 Bacteria 1381
7 Ga0070679_100113747 3300005530 Bacteria 2691
8 Ga0068857_100112418 3300005577 Bacteria 2448
9 Ga0068852_100010849 3300005616 Bacteria 6828
10 Ga0068852_100371334 3300005616 Bacteria 1401
11 Ga0068852_100672855 3300005616 Bacteria 1044
12 Ga0068870_10069944 3300005840 Bacteria 1911
13 Ga0068862_100638376 3300005844 Bacteria 1026
14 Ga0081455_10000609 3300005937 Bacteria 46322
15 Ga0081539_10027528 3300005985 Bacteria 3597
16 Ga0075363_100064412 3300006048 Bacteria 1980
17 Ga0075364_10017546 3300006051 Bacteria 4474
18 Ga0075364_10172022 3300006051 Bacteria 1464
19 Ga0075428_100021719 3300006844 Bacteria 7106
20 Ga0075431_100226922 3300006847 Bacteria 1904
21 Ga0075433_10149927 3300006852 Bacteria 2074
22 Ga0075434_100011689 3300006871 Bacteria 8292
23 Ga0075435_100010522 3300007076 Bacteria 6766
24 Ga0111539_10299798 3300009094 Bacteria 1871
25 Ga0114129_10140045 3300009147 Bacteria 3317
26 Ga0105243_10125275 3300009148 Bacteria 2172
27 Ga0105249_10281038 3300009553 Bacteria 1662
28 Ga0157369_10473385 3300013105 Bacteria 1296
29 Ga0157380_10593106 3300014326 Bacteria 1095
30 Ga0163161_10075651 3300017792 Bacteria 2471
31 Ga0206353_11109633 3300020082 Bacteria 1594
32 Ga0207654_10039468 3300025911 Bacteria 2656
33 Ga0207709_10096333 3300025935 Bacteria 1946
34 Ga0207709_10177386 3300025935 Bacteria 1501
35 Ga0207679_10009195 3300025945 Bacteria 6317
36 Ga0207667_10589702 3300025949 Bacteria 1121
37 Ga0207668_10034512 3300025972 Bacteria 3361
38 Ga0207678_10110957 3300026067 Bacteria 2340
39 Ga0207641_10373509 3300026088 Bacteria 1364
40 Ga0207676_10240526 3300026095 Bacteria 1624
41 Ga0207683_10233909 3300026121 Bacteria 1676
42 Ga0207698_10001762 3300026142 Bacteria 12625
43 Ga0207698_10126040 3300026142 Bacteria 2178
44 Ga0207428_10041424 3300027907 Bacteria 3729
45 Ga0268265_10527512 3300028380 Bacteria 1117
46 Ga0307517_10068574 3300028786 Bacteria 3228
47 Ga0307512_10097026 3300030522 Bacteria 2018
48 Ga0307508_10013131 3300031616 Bacteria 7576
49 Ga0316576_10008369 3300031727 Bacteria 6591
50 Ga0316578_10009222 3300031728 Bacteria 5066
51 Ga0307405_10163715 3300031731 Bacteria 1579
52 Ga0307405_10232044 3300031731 Bacteria 1361
53 Ga0307410_10060289 3300031852 Bacteria 2593
54 Ga0307410_10459400 3300031852 Bacteria 1040
55 Ga0307406_10044391 3300031901 Bacteria 2785
56 Ga0307406_10132280 3300031901 Bacteria 1753
57 Ga0307406_10273200 3300031901 Bacteria 1285
58 Ga0307407_10044062 3300031903 Bacteria 2512
59 Ga0307407_10239320 3300031903 Bacteria 1237
60 Ga0307412_10499840 3300031911 Bacteria 1012
61 Ga0307409_100089580 3300031995 Bacteria 2515
62 Ga0307409_100105609 3300031995 Bacteria 2348
63 Ga0307409_100169183 3300031995 Bacteria 1921
64 Ga0307409_100185724 3300031995 Bacteria 1845
65 Ga0307409_100241244 3300031995 Bacteria 1645
66 Ga0307409_100463858 3300031995 Bacteria 1225
67 Ga0307416_100237178 3300032002 Bacteria 1764
68 Ga0307416_100248696 3300032002 Bacteria 1729
69 Ga0307416_100429066 3300032002 Bacteria 1368
70 Ga0307411_10184945 3300032005 Bacteria 1585
71 Ga0307415_100359397 3300032126 Bacteria 1229
72 Ga0307415_100443971 3300032126 Bacteria 1120
73 Ga0307415_100593520 3300032126 Bacteria 984
74 Ga0373960_0014530 3300035121 Bacteria 1997
75 Ga0316574_0013576 3300035398 Bacteria 4686
76 Ga0372808_000257 3300036459 Bacteria 3595
77 Ga0316582_0014959 3300036647 Bacteria 4421
78 Ga0316584_0002695 3300036712 Bacteria 11342
79 Ga0395898_0097282 3300037466 Bacteria 2827
80 Ga0395898_0339076 3300037466 Bacteria 1433
81 Ga0395901_0009847 3300038443 Bacteria 9689
82 Ga0395901_0052149 3300038443 Bacteria 4252
83 Ga0395901_0098749 3300038443 Bacteria 3061
84 Ga0439461_0019705 3300041410 Bacteria 1331
85 Ga0466972_0105248 3300044658 Bacteria 1334
86 Ga0466965_0001382 3300044683 Bacteria 9745
87 Ga0466965_0007466 3300044683 Bacteria 5022
88 Ga0466966_0022607 3300044684 Bacteria 4124
89 Ga0466963_0251290 3300044694 Bacteria 1241
90 Ga0466970_0002720 3300044765 Bacteria 8539
91 Ga0466970_0012331 3300044765 Bacteria 4368
92 Ga0466957_0023063 3300044842 Bacteria 3676
93 Ga0466957_0024042 3300044842 Bacteria 3606
94 Ga0466957_0208565 3300044842 Bacteria 1286
95 Ga0466960_0000534 3300044901 Bacteria 13017
96 Ga0466960_0246518 3300044901 Bacteria 991
97 Ga0466959_0021275 3300045049 Bacteria 4783
98 Ga0466959_0318956 3300045049 Bacteria 1062
99 Ga0466967_0007413 3300045976 Bacteria 7911
100 Ga0466967_0144245 3300045976 Bacteria 2220
101 Ga0466967_0188682 3300045976 Bacteria 1947
102 Ga0466967_0234371 3300045976 Bacteria 1749
103 Ga0495588_0079962 3300046674 Bacteria 1706
104 Ga0496101_0034064 3300048904 Bacteria 3596
105 Ga0496102_0009007 3300048905 Bacteria 8566
106 Ga0496108_0093980 3300048911 Bacteria 2552
107 Ga0501031_0023693 3300049568 Bacteria 4001
108 Ga0501033_0016271 3300049570 Bacteria 5632
109 Ga0501034_0009479 3300049571 Bacteria 10191
110 Ga0501034_0171865 3300049571 Bacteria 2134
111 Ga0501036_0008722 3300049572 Bacteria 8318
112 Ga0501038_0029044 3300049574 Bacteria 4904
113 Ga0501039_0005851 3300049575 Bacteria 9312
114 Ga0501039_0101270 3300049575 Bacteria 2248
115 Ga0501042_0150710 3300049578 Bacteria 1677
116 Ga0501046_0008441 3300049580 Bacteria 8987
117 Ga0501047_0045592 3300049581 Bacteria 4239
118 Ga0501048_0003323 3300049582 Bacteria 12251
119 Ga0501068_0035552 3300049584 Bacteria 2974
120 Ga0501068_0055588 3300049584 Bacteria 2398
121 Ga0501070_0012570 3300049586 Bacteria 7141
122 Ga0501070_0168551 3300049586 Bacteria 1804
123 Ga0501071_0048833 3300049587 Bacteria 3044
124 Ga0501072_0041623 3300049588 Bacteria 3609
125 Ga0501073_0093426 3300049589 Bacteria 2090
126 Ga0501074_0021830 3300049590 Bacteria 4647
127 Ga0501074_0042386 3300049590 Bacteria 3293
128 Ga0501075_0044823 3300049591 Bacteria 3318
129 Ga0501079_0088551 3300049741 Bacteria 2397
130 Ga0501079_0177594 3300049741 Bacteria 1661
131 Ga0501080_0054936 3300049742 Bacteria 3708
132 Ga0501083_0084543 3300049744 Bacteria 2101
133 Ga0501035_0021787 3300049822 Bacteria 5890
134 Ga0501044_0005230 3300049823 Bacteria 14437
135 Ga0501045_0012631 3300049824 Bacteria 5946
136 Ga0501045_0165076 3300049824 Bacteria 1649
137 nmdc:mga03n38_98659_c1 3300050490 Bacteria 1405
138 nmdc:mga00v17_22876_c1 3300050491 Bacteria 3612
139 nmdc:mga0yw44_121032_c1 3300050492 Bacteria 1686
140 nmdc:mga0yw44_294886_c1 3300050492 Bacteria 1086
141 nmdc:mga05p37_87402_c1 3300050507 Bacteria 3842
142 nmdc:mga06r32_63085_c1 3300050510 Bacteria 3571
143 nmdc:mga06r32_79005_c1 3300050510 Bacteria 3199
144 nmdc:mga08y16_230256_c1 3300050511 Bacteria 1917
145 nmdc:mga0n895_106818_c1 3300050512 Bacteria 2813
146 nmdc:mga0a205_182141_c1 3300050515 Bacteria 1995
147 Ga0495601_0008737 3300053077 Bacteria 5978
148 Ga0500583_0061158 3300053092 Bacteria 1778
149 Ga0501082_0040875 3300060353 Bacteria 3998
150 2547406956 2547132111 Bacteria 8013147
151 2644229592 2643221641 Bacteria 4490190
152 2671837994 2671180195 Bacteria 9757215
153 2686539180 2684623035 Bacteria 8032739
154 2744958396 2744054611 Bacteria 5611514
155 2774856150 2773857922 Bacteria 9757215
156 2785338804 2784746763 Bacteria 9783172
157 2870784690 2870782633 Bacteria 9624083
158 2884698846 2884693830 Bacteria 11273186
159 2895450111 2895442618 Bacteria 11027144
160 2895890469 2895880812 Bacteria 11255272
161 2946035976 2946033335 Bacteria 3835514
162 Ga0496111_0268087
163 Ga0070658_10156835
164 Ga0070683_100119747
165 Ga0070674_100394083
166 Ga0070663_100094335
167 Ga0070681_10352701
168 Ga0070679_100113747
169 Ga0068857_100112418
170 Ga0068852_100010849
171 Ga0068852_100371334
172 Ga0068852_100672855
173 Ga0068870_10069944
174 Ga0068862_100638376
175 Ga0081455_10000609
176 Ga0081539_10027528
177 Ga0075363_100064412
178 Ga0075364_10017546
179 Ga0075364_10172022
180 Ga0075428_100021719
181 Ga0075431_100226922
182 Ga0075433_10149927
183 Ga0075434_100011689
184 Ga0075435_100010522
185 Ga0111539_10299798
186 Ga0114129_10140045
187 Ga0105243_10125275
188 Ga0105249_10281038
189 Ga0157369_10473385
190 Ga0157380_10593106
191 Ga0163161_10075651
192 Ga0206353_11109633
193 Ga0207654_10039468
194 Ga0207709_10096333
195 Ga0207709_10177386
196 Ga0207679_10009195
197 Ga0207667_10589702
198 Ga0207668_10034512
199 Ga0207678_10110957
200 Ga0207641_10373509
201 Ga0207676_10240526
202 Ga0207683_10233909
203 Ga0207698_10001762
204 Ga0207698_10126040
205 Ga0207428_10041424
206 Ga0268265_10527512
207 Ga0307517_10068574
208 Ga0307512_10097026
209 Ga0307508_10013131
210 Ga0316576_10008369
211 Ga0316578_10009222
212 Ga0307405_10163715
213 Ga0307405_10232044
214 Ga0307410_10060289
215 Ga0307410_10459400
216 Ga0307406_10044391
217 Ga0307406_10132280
218 Ga0307406_10273200
219 Ga0307407_10044062
220 Ga0307407_10239320
221 Ga0307412_10499840
222 Ga0307409_100089580
223 Ga0307409_100105609
224 Ga0307409_100169183
225 Ga0307409_100185724
226 Ga0307409_100241244
227 Ga0307409_100463858
228 Ga0307416_100237178
229 Ga0307416_100248696
230 Ga0307416_100429066
231 Ga0307411_10184945
232 Ga0307415_100359397
233 Ga0307415_100443971
234 Ga0307415_100593520
235 Ga0373960_0014530
236 Ga0316574_0013576
237 Ga0372808_000257
238 Ga0316582_0014959
239 Ga0316584_0002695
240 Ga0395898_0097282
241 Ga0395898_0339076
242 Ga0395901_0009847
243 Ga0395901_0052149
244 Ga0395901_0098749
245 Ga0439461_0019705
246 Ga0466972_0105248
247 Ga0466965_0001382
248 Ga0466965_0007466
249 Ga0466966_0022607
250 Ga0466963_0251290
251 Ga0466970_0002720
252 Ga0466970_0012331
253 Ga0466957_0023063
254 Ga0466957_0024042
255 Ga0466957_0208565
256 Ga0466960_0000534
257 Ga0466960_0246518
258 Ga0466959_0021275
259 Ga0466959_0318956
260 Ga0466967_0007413
261 Ga0466967_0144245
262 Ga0466967_0188682
263 Ga0466967_0234371
264 Ga0495588_0079962
265 Ga0496101_0034064
266 Ga0496102_0009007
267 Ga0496108_0093980
268 Ga0501031_0023693
269 Ga0501033_0016271
270 Ga0501034_0009479
271 Ga0501034_0171865
272 Ga0501036_0008722
273 Ga0501038_0029044
274 Ga0501039_0005851
275 Ga0501039_0101270
276 Ga0501042_0150710
277 Ga0501046_0008441
278 Ga0501047_0045592
279 Ga0501048_0003323
280 Ga0501068_0035552
281 Ga0501068_0055588
282 Ga0501070_0012570
283 Ga0501070_0168551
284 Ga0501071_0048833
285 Ga0501072_0041623
286 Ga0501073_0093426
287 Ga0501074_0021830
288 Ga0501074_0042386
289 Ga0501075_0044823
290 Ga0501079_0088551
291 Ga0501079_0177594
292 Ga0501080_0054936
293 Ga0501083_0084543
294 Ga0501035_0021787
295 Ga0501044_0005230
296 Ga0501045_0012631
297 Ga0501045_0165076
298 nmdc:mga03n38_98659_c1
299 nmdc:mga00v17_22876_c1
300 nmdc:mga0yw44_121032_c1
301 nmdc:mga0yw44_294886_c1
302 nmdc:mga05p37_87402_c1
303 nmdc:mga06r32_63085_c1
304 nmdc:mga06r32_79005_c1
305 nmdc:mga08y16_230256_c1
306 nmdc:mga0n895_106818_c1
307 nmdc:mga0a205_182141_c1
308 Ga0495601_0008737
309 Ga0500583_0061158
310 Ga0501082_0040875
311 2547406956
312 2644229592
313 2671837994
314 2686539180
315 2744958396
316 2774856150
317 2785338804
318 2870784690
319 2884698846
320 2895450111
321 2895890469
322 2946035976

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

107

155

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

101

154

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

6

71

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.8975 116 171
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8755 112 174
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.8636 113 171
1h3l-assembly1.cif.gz_A n-terminal fragment of sigr from streptomyces coelicolor 0.8585 21 79
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.8585 113 171
ID Description Score Start End Superfamily
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8948 118 171 1.10.10.10
1or7A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8738 114 174 1.10.10.10
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8665 114 171 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8636 113 171 1.10.10.10
3hugK00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8622 114 174 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6B2T2Y3-F1-model_v4 RNA polymerase subunit sigma-24 0.9179 188 295 GO:0016987
AF-U2R1V7-F1-model_v4 Uncharacterized protein 0.8926 215 298 GO:0016987
AF-A0A854Q2L1-F1-model_v4 deleted 0.8859 175 299
AF-A0A238WDN6-F1-model_v4 SnoaL-like domain-containing protein 0.8793 189 299 GO:0016987
AF-A0A656KVT4-F1-model_v4 deleted 0.8716 181 306

Map