F236805

General Info

Members Datasets Scaffolds Average Seq Length
161 87 147 662

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10000173|Ga0105240_1000017385
Length 683
Sequence MEESKEQQSQHRFLQAAIYLSVALEIFCFICGPRLLQSHAYKGLAFFIERLHRLKIYQHPLNSKLFTLILICLVSVGTLSKKQKDFNPKNSVAYPLSVGLLLFFGCLWFYGRQGLPVVYGLSWSDIAYIVLAFAGTVLIHISMDNVSKMISARLGKDRWNIEEESFMQRTTPLLANNAVNIPTLFYFKRKVHRGYLVLENLYRGILLLGVPGSGKSFGIVMPVIRQMIANEFTLCVYDLKFPDLGKVAYYHYLLAKQNGKCEGYTFHVVNLNDPEKSRRVNPFNRKYLKTLADASENAEALVEALKKGDKSGGSDQFFTQSAVNFLAACIYFFSKYEDGKYSSLPHVLAFLNLPYEEVFNTLFSEPELASLLSPFVTAYRAKAFEQLEGQVGTLKIFISRMATKETFWVFSGDDFDLKISDPNHPGILILANDPSTQSINSACYSVVMNCILREVNSKGNIPVGIVVDESPSLYCHRVDVCVSQARSNRVSVLLGMQELPMLRQQYGKETAETITSVMGNVLSGSVRNKDTLEWLERLFGKVKQTGESISIDRNKTSLSLNERLEPLIPAGKIASLKAGEMVGLLASDAVEKFTGKYETSAVNCRINLDLEAIKTEEKAYKDLPLFYDFKGKKDEVLRSNYLRITNEVLAMTRTFRKIPPQQPAGGVKGTMRPANTIQNTLRK

Samples

Sample ID Description Type Environment
1 2739367656 Pedobacter sp. CF523 Isolate Unclassified
2 2739367663 Pedobacter sp. YR510 Isolate Unclassified
3 2818991437 Pedobacter terrae 518 Isolate Unclassified
4 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
5 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
6 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
7 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
8 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
9 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
10 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
11 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
12 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
13 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
14 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
15 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
16 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
17 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
18 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
19 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
22 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
23 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
24 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
42 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
43 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
46 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
47 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
48 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
72 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
73 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
74 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
75 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
76 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
77 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
81 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
82 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
83 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
84 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
85 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
86 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
87 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.93
Metatranscriptomes 0
Isolates 8.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.29
Nodule 0
Rhizoplane 0
Rhizosphere 77.64
Stem 0
Stem Tuber 0
Unclassified 8.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1000005 3300002737 Bacteria 435925
2 JGI25150J39212_1000029 3300002774 Bacteria 103974
3 JGI25151J46595_10000003 3300003187 Bacteria 715330
4 JGI25153J46596_10000111 3300003215 Bacteria 92915
5 rootH2_10000231 3300003320 Bacteria 15757
6 rootH2_10010201 3300003320 Bacteria 15086
7 rootL2_10006015 3300003322 Bacteria 19280
8 rootL2_10094355 3300003322 Bacteria 4203
9 rootH1_10079289 3300003323 Bacteria 8955
10 rootH1_10092274 3300003323 Bacteria 8777
11 rootH1_10172575 3300003323 Bacteria 3972
12 Ga0055536_1000012 3300003781 Bacteria 263217
13 Ga0055530_10001256 3300003791 Bacteria 19253
14 Ga0065714_10064431 3300005288 Bacteria 135024
15 Ga0065714_10064540 3300005288 Bacteria 39469
16 Ga0070658_10000100 3300005327 Bacteria 76165
17 Ga0070663_100007664 3300005455 Bacteria 6587
18 Ga0068855_100002083 3300005563 Bacteria 24775
19 Ga0068855_100010925 3300005563 Bacteria 10958
20 Ga0068855_100014846 3300005563 Bacteria 9379
21 Ga0068855_100041704 3300005563 Bacteria 5439
22 Ga0068856_100000005 3300005614 Bacteria 225505
23 Ga0068856_100000100 3300005614 Bacteria 82857
24 Ga0068856_100045108 3300005614 Bacteria 4339
25 Ga0068856_100069205 3300005614 Bacteria 3490
26 Ga0068865_100000015 3300006881 Bacteria 129922
27 Ga0105240_10000044 3300009093 Bacteria 250257
28 Ga0105240_10000075 3300009093 Bacteria 199596
29 Ga0105240_10000173 3300009093 Bacteria 131281
30 Ga0105240_10000316 3300009093 Bacteria 92409
31 Ga0105240_10000686 3300009093 Bacteria 62303
32 Ga0105240_10003706 3300009093 Bacteria 23613
33 Ga0105240_10027209 3300009093 Bacteria 7490
34 Ga0105240_10139259 3300009093 Bacteria 2903
35 Ga0105241_10000089 3300009174 Bacteria 68136
36 Ga0105241_10004169 3300009174 Bacteria 10673
37 Ga0105241_10021252 3300009174 Bacteria 4796
38 Ga0105237_10000176 3300009545 Bacteria 90175
39 Ga0105237_10000511 3300009545 Bacteria 54911
40 Ga0105237_10000786 3300009545 Bacteria 43345
41 Ga0105237_10031258 3300009545 Bacteria 5399
42 Ga0105238_10000124 3300009551 Bacteria 85021
43 Ga0105238_10022060 3300009551 Bacteria 6490
44 Ga0105238_10027292 3300009551 Bacteria 5817
45 Ga0105238_10100160 3300009551 Bacteria 2881
46 Ga0105238_10130303 3300009551 Bacteria 2493
47 Ga0105239_10000001 3300010375 Bacteria 617353
48 Ga0105239_10000005 3300010375 Bacteria 496066
49 Ga0105239_10000053 3300010375 Bacteria 163705
50 Ga0105239_10000055 3300010375 Bacteria 158211
51 Ga0105239_10000177 3300010375 Bacteria 92286
52 Ga0105239_10005161 3300010375 Bacteria 15414
53 Ga0105239_10005612 3300010375 Bacteria 14672
54 Ga0105239_10024442 3300010375 Bacteria 6657
55 Ga0157373_10000053 3300013100 Bacteria 104200
56 Ga0157371_10006752 3300013102 Bacteria 9381
57 Ga0157370_10000040 3300013104 Bacteria 134107
58 Ga0157370_10000247 3300013104 Bacteria 69318
59 Ga0157370_10000392 3300013104 Bacteria 55046
60 Ga0157370_10003085 3300013104 Bacteria 19728
61 Ga0157370_10004088 3300013104 Bacteria 16925
62 Ga0157370_10004383 3300013104 Bacteria 16204
63 Ga0157370_10058546 3300013104 Bacteria 3662
64 Ga0157369_10000005 3300013105 Bacteria 470816
65 Ga0157374_10000063 3300013296 Bacteria 109371
66 Ga0157374_10015263 3300013296 Bacteria 6737
67 Ga0163162_10050362 3300013306 Bacteria 4177
68 Ga0157372_10000353 3300013307 Bacteria 50337
69 Ga0182008_10000030 3300014497 Bacteria 169168
70 Ga0182008_10000223 3300014497 Bacteria 44585
71 Ga0182006_1000278 3300015261 Bacteria 45666
72 Ga0182007_10000001 3300015262 Bacteria 1127301
73 Ga0182007_10000023 3300015262 Bacteria 187131
74 Ga0163161_10000070 3300017792 Bacteria 103561
75 Ga0163161_10012474 3300017792 Bacteria 5899
76 Ga0163161_10045569 3300017792 Bacteria 3163
77 Ga0209437_100043 3300025233 Bacteria 440454
78 Ga0207425_1000004 3300025245 Bacteria 1092421
79 Ga0209129_1000005 3300025258 Bacteria 777812
80 Ga0209455_1003406 3300025272 Bacteria 5637
81 Ga0209455_1003618 3300025272 Bacteria 5379
82 Ga0209455_1003737 3300025272 Bacteria 5250
83 Ga0209676_1000001 3300025292 Bacteria 1852142
84 Ga0209025_1000009 3300025294 Bacteria 1092561
85 Ga0209758_1000010 3300025297 Bacteria 1092782
86 Ga0209050_1000018 3300025298 Bacteria 723263
87 Ga0207705_10000126 3300025909 Bacteria 83870
88 Ga0207654_10000040 3300025911 Bacteria 105600
89 Ga0207654_10028047 3300025911 Bacteria 3066
90 Ga0207695_10000013 3300025913 Bacteria 821265
91 Ga0207695_10000053 3300025913 Bacteria 396740
92 Ga0207695_10000055 3300025913 Bacteria 382776
93 Ga0207695_10000524 3300025913 Bacteria 81259
94 Ga0207695_10048956 3300025913 Bacteria 4459
95 Ga0207695_10057389 3300025913 Bacteria 4044
96 Ga0207671_10000136 3300025914 Bacteria 112191
97 Ga0207671_10000172 3300025914 Bacteria 99486
98 Ga0207671_10000237 3300025914 Bacteria 82854
99 Ga0207694_10000244 3300025924 Bacteria 52258
100 Ga0207704_10000010 3300025938 Bacteria 188125
101 Ga0207667_10004802 3300025949 Bacteria 16529
102 Ga0207667_10013863 3300025949 Bacteria 9208
103 Ga0207667_10015423 3300025949 Bacteria 8682
104 Ga0207667_10057678 3300025949 Bacteria 4075
105 Ga0207702_10000047 3300026078 Bacteria 143192
106 Ga0207702_10000288 3300026078 Bacteria 58420
107 Ga0307515_10000839 3300028794 Bacteria 70656
108 Ga0265338_10011075 3300028800 Bacteria 10461
109 Ga0265338_10039482 3300028800 Bacteria 4451
110 Ga0307408_100000444 3300031548 Bacteria 36433
111 Ga0307405_10000014 3300031731 Bacteria 226733
112 Ga0307405_10000020 3300031731 Bacteria 156779
113 Ga0307407_10000004 3300031903 Bacteria 240912
114 Ga0307416_100000001 3300032002 Bacteria 515017
115 Ga0307414_10000245 3300032004 Bacteria 34318
116 Ga0395899_0000001 3300037312 Bacteria 1750322
117 Ga0395900_0000122 3300037418 Bacteria 133423
118 Ga0466966_0000714 3300044684 Bacteria 21065
119 Ga0495650_0000003 3300046471 Bacteria 900730
120 Ga0495650_0000036 3300046471 Bacteria 400633
121 Ga0495650_0006962 3300046471 Bacteria 6915
122 Ga0495650_0030466 3300046471 Bacteria 2444
123 Ga0495585_0000058 3300046492 Bacteria 112144
124 Ga0495583_0015796 3300046506 Bacteria 4089
125 Ga0495606_0006034 3300046507 Bacteria 11340
126 Ga0495606_0062305 3300046507 Bacteria 2382
127 Ga0495610_0000172 3300046512 Bacteria 72424
128 Ga0495610_0031654 3300046512 Unclassified 2757
129 Ga0495648_0004008 3300046524 Bacteria 12727
130 Ga0495633_0000142 3300046558 Bacteria 95597
131 Ga0495668_0000153 3300046616 Bacteria 104580
132 Ga0495625_0000090 3300046660 Bacteria 146944
133 Ga0495661_0000645 3300046665 Bacteria 35309
134 Ga0495661_0002875 3300046665 Bacteria 13020
135 Ga0495649_0000003 3300046694 Bacteria 880817
136 Ga0495687_000206 3300047443 Bacteria 84323
137 Ga0495687_001019 3300047443 Bacteria 27958
138 Ga0495686_0000138 3300047472 Bacteria 146224
139 Ga0495686_0000150 3300047472 Bacteria 135172
140 Ga0495686_0008045 3300047472 Bacteria 7814
141 Ga0500635_0001020 3300053080 Bacteria 6707
142 Ga0500651_0000181 3300053093 Bacteria 40952
143 Ga0500618_000259 3300053125 Bacteria 41609
144 Ga0500618_000262 3300053125 Bacteria 40957
145 Ga0500618_000329 3300053125 Bacteria 34392
146 Ga0500624_000241 3300053157 Bacteria 19457
147 Ga0500624_000297 3300053157 Bacteria 17026

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031548 Ga0307408_100000444 Ga0307408_10000044412 581
2 3300046471 Ga0495650_0030466 Ga0495650_0030466_59_1834 581
3 3300046512 Ga0495610_0031654 Ga0495610_0031654_882_2705 602
4 3300046507 Ga0495606_0062305 Ga0495606_0062305_453_2339 614
5 3300003323 rootH1_10172575 rootH1_101725753 625
6 3300031731 Ga0307405_10000014 Ga0307405_1000001479 641
7 3300005563 Ga0068855_100002083 Ga0068855_10000208311 642
8 3300025949 Ga0207667_10004802 Ga0207667_100048027 642
9 3300009093 Ga0105240_10000316 Ga0105240_1000031644 648
10 3300009174 Ga0105241_10000089 Ga0105241_1000008927 648
11 3300009545 Ga0105237_10000511 Ga0105237_1000051146 648
12 3300009551 Ga0105238_10000124 Ga0105238_1000012439 648
13 3300009551 Ga0105238_10130303 Ga0105238_101303032 648
14 3300010375 Ga0105239_10000177 Ga0105239_1000017744 648
15 3300025911 Ga0207654_10000040 Ga0207654_1000004056 648
16 3300025913 Ga0207695_10000524 Ga0207695_1000052456 648
17 3300025914 Ga0207671_10000136 Ga0207671_1000013642 648
18 3300025924 Ga0207694_10000244 Ga0207694_1000024420 648
19 iso_pu_bacteria 2739367663 2739648657 648
20 iso_pu_bacteria 2896344016 2896345297 648
21 iso_pu_bacteria 2945997725 2946001540 648
22 iso_pu_bacteria 2954016120 2954016974 648
23 3300005614 Ga0068856_100045108 Ga0068856_1000451082 650
24 3300009545 Ga0105237_10031258 Ga0105237_100312583 650
25 3300053125 Ga0500618_000262 Ga0500618_000262_15319_17340 650
26 iso_pu_bacteria 2739367656 2739616777 650
27 3300005327 Ga0070658_10000100 Ga0070658_1000010027 651
28 3300025909 Ga0207705_10000126 Ga0207705_1000012662 651
29 3300002774 JGI25150J39212_1000029 JGI25150J39212_100002967 652
30 3300003187 JGI25151J46595_10000003 JGI25151J46595_10000003139 652
31 3300003215 JGI25153J46596_10000111 JGI25153J46596_1000011173 652
32 3300005288 Ga0065714_10064431 Ga0065714_10064431109 652
33 3300005288 Ga0065714_10064540 Ga0065714_1006454043 652
34 3300013104 Ga0157370_10000247 Ga0157370_1000024741 652
35 3300013104 Ga0157370_10003085 Ga0157370_100030853 652
36 3300013104 Ga0157370_10004088 Ga0157370_100040883 652
37 3300013104 Ga0157370_10004383 Ga0157370_100043835 652
38 3300013105 Ga0157369_10000005 Ga0157369_10000005232 652
39 3300015262 Ga0182007_10000001 Ga0182007_10000001758 652
40 3300017792 Ga0163161_10000070 Ga0163161_1000007014 652
41 3300025245 Ga0207425_1000004 Ga0207425_1000004436 652
42 3300025258 Ga0209129_1000005 Ga0209129_1000005504 652
43 3300025294 Ga0209025_1000009 Ga0209025_1000009436 652
44 3300025297 Ga0209758_1000010 Ga0209758_1000010437 652
45 3300031903 Ga0307407_10000004 Ga0307407_1000000459 652
46 3300032002 Ga0307416_100000001 Ga0307416_100000001322 652
47 3300032004 Ga0307414_10000245 Ga0307414_100002456 652
48 3300046506 Ga0495583_0015796 Ga0495583_0015796_1560_3605 652
49 iso_pu_bacteria 2919437846 2919441385 652
50 3300017792 Ga0163161_10045569 Ga0163161_100455692 653
51 3300025272 Ga0209455_1003737 Ga0209455_10037373 654
52 3300005563 Ga0068855_100014846 Ga0068855_10001484610 656
53 3300009093 Ga0105240_10027209 Ga0105240_100272093 656
54 3300009545 Ga0105237_10000176 Ga0105237_1000017659 656
55 3300025914 Ga0207671_10000172 Ga0207671_1000017252 656
56 3300025949 Ga0207667_10013863 Ga0207667_100138635 656
57 3300013100 Ga0157373_10000053 Ga0157373_1000005317 657
58 3300013104 Ga0157370_10000392 Ga0157370_1000039219 657
59 3300014497 Ga0182008_10000223 Ga0182008_1000022352 657
60 3300047443 Ga0495687_000206 Ga0495687_000206_52516_54489 657
61 3300047472 Ga0495686_0000150 Ga0495686_0000150_29600_31573 657
62 3300047472 Ga0495686_0008045 Ga0495686_0008045_5107_7080 657
63 3300053093 Ga0500651_0000181 Ga0500651_0000181_32557_34530 657
64 3300014497 Ga0182008_10000030 Ga0182008_10000030136 659
65 3300025913 Ga0207695_10057389 Ga0207695_100573891 659
66 3300046471 Ga0495650_0006962 Ga0495650_0006962_3018_5015 659
67 3300046492 Ga0495585_0000058 Ga0495585_0000058_58452_60449 659
68 3300046512 Ga0495610_0000172 Ga0495610_0000172_55523_57502 659
69 3300047443 Ga0495687_001019 Ga0495687_001019_11426_13423 659
70 3300053125 Ga0500618_000329 Ga0500618_000329_15461_17458 659
71 iso_pu_bacteria 3003233435 3003234749 659
72 3300037312 Ga0395899_0000001 Ga0395899_0000001_187560_189581 661
73 iso_pu_bacteria 2818991437 2819547029 661
74 iso_pu_bacteria 2849281842 2849286698 661
75 iso_pu_bacteria 2852627209 2852631570 661
76 iso_pu_bacteria 2884933994 2884936050 661
77 iso_pu_bacteria 2902048731 2902052760 661
78 iso_pu_bacteria 2977232053 2977232420 661
79 3300003322 rootL2_10006015 rootL2_100060159 662
80 3300046665 Ga0495661_0000645 Ga0495661_0000645_12128_14146 662
81 3300047472 Ga0495686_0000138 Ga0495686_0000138_35801_37828 662
82 3300003322 rootL2_10094355 rootL2_100943553 664
83 3300013306 Ga0163162_10050362 Ga0163162_100503623 664
84 3300046507 Ga0495606_0006034 Ga0495606_0006034_5980_7977 664
85 3300046558 Ga0495633_0000142 Ga0495633_0000142_6784_8793 664
86 3300002737 JGI25162J39368_1000005 JGI25162J39368_100000568 665
87 3300003320 rootH2_10000231 rootH2_100002312 665
88 3300003320 rootH2_10010201 rootH2_100102015 665
89 3300003323 rootH1_10079289 rootH1_1007928910 665
90 3300003323 rootH1_10092274 rootH1_100922743 665
91 3300003781 Ga0055536_1000012 Ga0055536_100001256 665
92 3300003791 Ga0055530_10001256 Ga0055530_100012569 665
93 3300005455 Ga0070663_100007664 Ga0070663_1000076646 665
94 3300005563 Ga0068855_100010925 Ga0068855_1000109257 665
95 3300005563 Ga0068855_100041704 Ga0068855_1000417041 665
96 3300005614 Ga0068856_100000005 Ga0068856_10000000565 665
97 3300005614 Ga0068856_100000100 Ga0068856_10000010025 665
98 3300005614 Ga0068856_100069205 Ga0068856_1000692053 665
99 3300006881 Ga0068865_100000015 Ga0068865_10000001562 665
100 3300009093 Ga0105240_10000044 Ga0105240_1000004481 665
101 3300009093 Ga0105240_10000075 Ga0105240_10000075143 665
102 3300009093 Ga0105240_10000173 Ga0105240_1000017385 665
103 3300009093 Ga0105240_10000686 Ga0105240_1000068646 665
104 3300009093 Ga0105240_10003706 Ga0105240_1000370627 665
105 3300009093 Ga0105240_10139259 Ga0105240_101392591 665
106 3300009174 Ga0105241_10004169 Ga0105241_100041699 665
107 3300009174 Ga0105241_10021252 Ga0105241_100212523 665
108 3300009545 Ga0105237_10000786 Ga0105237_1000078632 665
109 3300009551 Ga0105238_10022060 Ga0105238_100220604 665
110 3300009551 Ga0105238_10027292 Ga0105238_100272923 665
111 3300009551 Ga0105238_10100160 Ga0105238_101001603 665
112 3300010375 Ga0105239_10000001 Ga0105239_10000001476 665
113 3300010375 Ga0105239_10000005 Ga0105239_10000005316 665
114 3300010375 Ga0105239_10000053 Ga0105239_1000005388 665
115 3300010375 Ga0105239_10000055 Ga0105239_10000055103 665
116 3300010375 Ga0105239_10005161 Ga0105239_1000516116 665
117 3300010375 Ga0105239_10005612 Ga0105239_100056129 665
118 3300010375 Ga0105239_10024442 Ga0105239_100244422 665
119 3300013102 Ga0157371_10006752 Ga0157371_1000675213 665
120 3300013104 Ga0157370_10000040 Ga0157370_1000004013 665
121 3300013104 Ga0157370_10058546 Ga0157370_100585464 665
122 3300013296 Ga0157374_10000063 Ga0157374_1000006316 665
123 3300013296 Ga0157374_10015263 Ga0157374_100152633 665
124 3300013307 Ga0157372_10000353 Ga0157372_1000035334 665
125 3300015261 Ga0182006_1000278 Ga0182006_100027815 665
126 3300015262 Ga0182007_10000023 Ga0182007_1000002384 665
127 3300017792 Ga0163161_10012474 Ga0163161_100124745 665
128 3300025233 Ga0209437_100043 Ga0209437_100043329 665
129 3300025272 Ga0209455_1003406 Ga0209455_10034062 665
130 3300025272 Ga0209455_1003618 Ga0209455_10036185 665
131 3300025292 Ga0209676_1000001 Ga0209676_10000011528 665
132 3300025298 Ga0209050_1000018 Ga0209050_100001853 665
133 3300025911 Ga0207654_10028047 Ga0207654_100280471 665
134 3300025913 Ga0207695_10000013 Ga0207695_10000013555 665
135 3300025913 Ga0207695_10000053 Ga0207695_1000005371 665
136 3300025913 Ga0207695_10000055 Ga0207695_10000055275 665
137 3300025913 Ga0207695_10048956 Ga0207695_100489563 665
138 3300025914 Ga0207671_10000237 Ga0207671_1000023733 665
139 3300025938 Ga0207704_10000010 Ga0207704_1000001080 665
140 3300025949 Ga0207667_10015423 Ga0207667_100154238 665
141 3300025949 Ga0207667_10057678 Ga0207667_100576783 665
142 3300026078 Ga0207702_10000047 Ga0207702_1000004768 665
143 3300026078 Ga0207702_10000288 Ga0207702_100002882 665
144 3300028794 Ga0307515_10000839 Ga0307515_1000083949 665
145 3300028800 Ga0265338_10011075 Ga0265338_100110753 665
146 3300028800 Ga0265338_10039482 Ga0265338_100394822 665
147 3300031731 Ga0307405_10000020 Ga0307405_1000002072 665
148 3300037312 Ga0395899_0000001 Ga0395899_0000001_1123265_1125283 665
149 3300037418 Ga0395900_0000122 Ga0395900_0000122_76393_78417 665
150 3300044684 Ga0466966_0000714 Ga0466966_0000714_13568_15592 665
151 3300046471 Ga0495650_0000003 Ga0495650_0000003_201505_203517 665
152 3300046471 Ga0495650_0000036 Ga0495650_0000036_100214_102235 665
153 3300046524 Ga0495648_0004008 Ga0495648_0004008_5826_7838 665
154 3300046616 Ga0495668_0000153 Ga0495668_0000153_95861_97873 665
155 3300046660 Ga0495625_0000090 Ga0495625_0000090_125787_127808 665
156 3300046665 Ga0495661_0002875 Ga0495661_0002875_4481_6481 665
157 3300046694 Ga0495649_0000003 Ga0495649_0000003_318509_320521 665
158 3300053080 Ga0500635_0001020 Ga0500635_0001020_1240_3273 665
159 3300053125 Ga0500618_000259 Ga0500618_000259_16034_18049 665
160 3300053157 Ga0500624_000241 Ga0500624_000241_8602_10635 665
161 3300053157 Ga0500624_000297 Ga0500624_000297_6545_8551 665

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12696

TraG-D_C

TraM recognition site of TraD and TraG

462

578

0.86

PF02534

T4SS-DNA_transf

Type IV secretory system Conjugative DNA transfer

160

586

0.76

PF14293

YWFCY

YWFCY protein

7

151

0.76

PF10412

TrwB_AAD_bind

Type IV secretion-system coupling protein DNA-binding domain

196

589

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
1e9s-assembly1.cif.gz_F bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.8137 198 606
1gl7-assembly1.cif.gz_E plasmid coupling protein trwb in complex with the non-hydrolisable atp-analogue adpnp. 0.8 198 606
1e9s-assembly2.cif.gz_L bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.7985 198 606
1e9s-assembly1.cif.gz_B bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.7977 198 606
1e9s-assembly1.cif.gz_E bacterial conjugative coupling protein trwbdeltan70. unbound monoclinic form. 0.7874 198 606
ID Description Score Start End Superfamily
1e9sG01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8168 198 606 3.40.50.300
4ag6B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6848 424 607 3.40.50.300
1e9sG01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.667 198 606 3.40.50.300
af_P9WNA7_712_974_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6471 163 243 3.40.50.300
4d2iB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.631 159 627 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A1M5HPE9-F1-model_v4 Type IV secretion-system coupling protein DNA-binding domain-containing protein 0.9494 263 648 GO:0003677
GO:0005886
AF-A0A562M6S3-F1-model_v4 Type IV secretion system coupling TraD/TrwB family protein 0.9475 274 664 GO:0005886
AF-W2CVJ8-F1-model_v4 TraD/TraG TraM recognition site domain-containing protein 0.9463 394 531 GO:0005886
AF-A0A1M5HPE9-F1-model_v4 Type IV secretion-system coupling protein DNA-binding domain-containing protein 0.9447 263 648 GO:0003677
GO:0005886
AF-A0A2N8N772-F1-model_v4 TraD/TraG TraM recognition site domain-containing protein 0.9412 410 525 GO:0005886

Feature Viewer

pLDDT pTM Quality
81.97 0.7 High
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Predicted Structure (AlphaFold2)

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