F236476

General Info

Members Datasets Scaffolds Average Seq Length
161 116 322 342

Family's Representative Sequence

Representative Sequence 3300005536|Ga0070697_100001756|Ga0070697_1000017563
Length 378
Sequence VGRGPPGVSRVKNDQEGASPRPGRRPPRKTTXPPLSGTPDAGALLDPAVQVEDRGAERTLRPRTLDEYVGQEKVKANLTVFIRAARGRGEPLDHVLLYGPPGLGKTTIAHILSHEMGAVLKSTSGPAIERAGDLAAILTNLEGAGILFIDEIHRLAPALEEILYQAMEDFRIDIVIGQGPMARTVKIDLPPFTLVGATTRVGLLTGPLRDRFGIVHHLDFYPVEDLVRIVRRSASILGIDIAPEGADEIARRSRGTPRIANRLLKRVRDFAQVEDDGRVTGAVAERHLERLEVDRFGLDLLDRKILLTIHEKFDGGPVGVNTIAAALGEERDTIEELYEPYLMQIGFLDRTSRGRRITSRALEHLKAARRSGQGRLWD

Samples

Sample ID Description Type Environment
1 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
65 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
68 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
69 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
70 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
71 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
72 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
73 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
77 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
78 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
83 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
84 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
85 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
89 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
92 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
97 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
98 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
99 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
100 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
101 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
102 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
105 2554235469 Sporolactobacillus laevolacticus DSM 442 Isolate Rhizosphere
106 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
107 2711768088 Sporolactobacillus terrae DSM 11697 Isolate Rhizosphere
108 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
109 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
110 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
111 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
112 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
113 2858438669 Leuconostoc mesenteroides YL48 Isolate Unclassified
114 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
115 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
116 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.55
Metatranscriptomes 0
Isolates 7.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.24
Rhizosphere 94.41
Stem 0
Stem Tuber 0
Unclassified 1.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070697_100001756 3300005536 Bacteria 16543
2 MRS1b_contig_1769440 2162886011 Bacteria 1391
3 Ga0065712_10098980 3300005290 Bacteria 2103
4 Ga0070658_10137905 3300005327 Bacteria 2036
5 Ga0070676_10013741 3300005328 Bacteria 4438
6 Ga0070660_100002472 3300005339 Bacteria 12669
7 Ga0070687_100036483 3300005343 Bacteria 2450
8 Ga0070668_100075644 3300005347 Bacteria 2629
9 Ga0070669_100000028 3300005353 Bacteria 165168
10 Ga0070671_100012424 3300005355 Bacteria 6857
11 Ga0070709_10000085 3300005434 Bacteria 70030
12 Ga0070710_10104644 3300005437 Bacteria 1691
13 Ga0070694_100003725 3300005444 Bacteria 9092
14 Ga0070694_100199971 3300005444 Bacteria 1489
15 Ga0070708_100009105 3300005445 Bacteria 8006
16 Ga0070708_100173881 3300005445 Bacteria 2012
17 Ga0070708_100443654 3300005445 Unclassified 1224
18 Ga0070706_100000049 3300005467 Bacteria 141287
19 Ga0070706_100027418 3300005467 Bacteria 5242
20 Ga0070707_100005093 3300005468 Bacteria 12319
21 Ga0070698_100004452 3300005471 Bacteria 15397
22 Ga0070698_100068640 3300005471 Bacteria 3561
23 Ga0070698_100236504 3300005471 Bacteria 1760
24 Ga0070699_100000007 3300005518 Bacteria 310847
25 Ga0070699_100012247 3300005518 Bacteria 7399
26 Ga0070699_100046893 3300005518 Bacteria 3739
27 Ga0070679_100108245 3300005530 Bacteria 2765
28 Ga0070697_100031869 3300005536 Bacteria 4241
29 Ga0070672_100285207 3300005543 Bacteria 1397
30 Ga0070695_100101985 3300005545 Bacteria 1934
31 Ga0070696_100026340 3300005546 Bacteria 3956
32 Ga0070696_100306514 3300005546 Bacteria 1218
33 Ga0070693_100178132 3300005547 Bacteria 1367
34 Ga0070704_100004646 3300005549 Bacteria 7943
35 Ga0070704_100011216 3300005549 Bacteria 5484
36 Ga0068860_100000998 3300005843 Bacteria 31349
37 Ga0068862_100001091 3300005844 Bacteria 25837
38 Ga0068862_100048976 3300005844 Bacteria 3608
39 Ga0081455_10005141 3300005937 Bacteria 14416
40 Ga0081539_10001026 3300005985 Bacteria 51455
41 Ga0070716_100031435 3300006173 Bacteria 2887
42 Ga0075428_100112228 3300006844 Bacteria 2969
43 Ga0075428_100147293 3300006844 Bacteria 2559
44 Ga0075428_100318720 3300006844 Bacteria 1671
45 Ga0075431_100003641 3300006847 Bacteria 14938
46 Ga0075431_100032558 3300006847 Bacteria 5372
47 Ga0075431_100111949 3300006847 Bacteria 2817
48 Ga0075433_10167339 3300006852 Bacteria 1956
49 Ga0075433_10218890 3300006852 Bacteria 1691
50 Ga0075434_100134165 3300006871 Bacteria 2495
51 Ga0075434_100206617 3300006871 Bacteria 1984
52 Ga0075429_100006340 3300006880 Bacteria 10236
53 Ga0075436_100000031 3300006914 Bacteria 89989
54 Ga0075435_100084551 3300007076 Bacteria 2611
55 Ga0075435_100112177 3300007076 Bacteria 2268
56 Ga0099794_10000009 3300007265 Bacteria 92040
57 Ga0099794_10018139 3300007265 Bacteria 3150
58 Ga0099794_10056066 3300007265 Bacteria 1906
59 Ga0099794_10062186 3300007265 Bacteria 1815
60 Ga0111539_10014725 3300009094 Bacteria 9758
61 Ga0114129_10003336 3300009147 Bacteria 22553
62 Ga0114129_10012572 3300009147 Bacteria 12055
63 Ga0114129_10853221 3300009147 Bacteria 1157
64 Ga0105237_10000452 3300009545 Bacteria 58208
65 Ga0105249_10301775 3300009553 Bacteria 1606
66 Ga0157372_10306201 3300013307 Bacteria 1849
67 Ga0157380_10186564 3300014326 Bacteria 1827
68 Ga0207692_10032364 3300025898 Bacteria 2513
69 Ga0207680_10119207 3300025903 Bacteria 1723
70 Ga0207699_10000083 3300025906 Bacteria 70819
71 Ga0207645_10188149 3300025907 Bacteria 1356
72 Ga0207705_10028580 3300025909 Bacteria 3975
73 Ga0207684_10000011 3300025910 Bacteria 502991
74 Ga0207671_10000088 3300025914 Bacteria 141485
75 Ga0207662_10166126 3300025918 Bacteria 1413
76 Ga0207657_10005959 3300025919 Bacteria 12682
77 Ga0207649_10108667 3300025920 Bacteria 1849
78 Ga0207652_10038457 3300025921 Bacteria 4056
79 Ga0207681_10000006 3300025923 Bacteria 496979
80 Ga0207644_10003501 3300025931 Bacteria 10159
81 Ga0207665_10018698 3300025939 Bacteria 4553
82 Ga0207711_10309268 3300025941 Bacteria 1459
83 Ga0207689_10319094 3300025942 Bacteria 1289
84 Ga0207698_10199089 3300026142 Bacteria 1792
85 Ga0209588_1000012 3300027671 Bacteria 141363
86 Ga0209588_1013775 3300027671 Bacteria 2470
87 Ga0268265_10000119 3300028380 Bacteria 99097
88 Ga0268265_10357641 3300028380 Bacteria 1335
89 Ga0268264_10005297 3300028381 Bacteria 10927
90 Ga0265334_10010241 3300028573 Bacteria 3956
91 Ga0265320_10092762 3300031240 Bacteria 1397
92 Ga0265314_10015233 3300031711 Bacteria 6107
93 Ga0316576_10000380 3300031727 Bacteria 20284
94 Ga0316576_10052432 3300031727 Unclassified 2970
95 Ga0316576_10103795 3300031727 Bacteria 2127
96 Ga0316578_10025190 3300031728 Bacteria 3343
97 Ga0316577_10008335 3300031733 Bacteria 5552
98 Ga0316580_10020930 3300032139 Bacteria 2015
99 Ga0316574_0040051 3300035398 Bacteria 2884
100 Ga0316582_0002615 3300036647 Bacteria 8531
101 Ga0316584_0000303 3300036712 Bacteria 25230
102 Ga0316584_0206719 3300036712 Bacteria 1446
103 Ga0395900_0005835 3300037418 Bacteria 12868
104 Ga0395905_0001270 3300037471 Bacteria 31148
105 Ga0395905_0001655 3300037471 Bacteria 26354
106 Ga0316581_0006986 3300037588 Bacteria 3010
107 Ga0400490_42273 3300038726 Bacteria 27628
108 Ga0400491_05762 3300038727 Bacteria 6676
109 Ga0451577_0000704 3300042876 Bacteria 52305
110 Ga0451577_0001136 3300042876 Bacteria 37745
111 Ga0451577_0005844 3300042876 Bacteria 12450
112 Ga0451577_0010725 3300042876 Bacteria 8724
113 Ga0453683_0086133 3300044673 Bacteria 1969
114 Ga0453684_0001053 3300044712 Bacteria 87876
115 Ga0453684_0002267 3300044712 Bacteria 47502
116 Ga0453684_0002404 3300044712 Bacteria 45631
117 Ga0453684_0003175 3300044712 Bacteria 37731
118 Ga0453684_0031167 3300044712 Bacteria 7502
119 Ga0453684_0372370 3300044712 Bacteria 1605
120 Ga0451576_0001198 3300045051 Bacteria 46382
121 Ga0451576_0005290 3300045051 Bacteria 16229
122 Ga0451576_0411698 3300045051 Bacteria 1418
123 Ga0451576_0414551 3300045051 Bacteria 1413
124 Ga0495624_0021557 3300046690 Bacteria 4271
125 Ga0495624_0134954 3300046690 Bacteria 1513
126 Ga0495674_0019695 3300047319 Bacteria 6258
127 Ga0495675_0129977 3300047444 Bacteria 1566
128 Ga0496109_0467569 3300048912 Bacteria 1191
129 Ga0501034_0169612 3300049571 Bacteria 2150
130 Ga0501068_0165588 3300049584 Bacteria 1394
131 Ga0501071_0214435 3300049587 Bacteria 1448
132 Ga0501072_0048381 3300049588 Bacteria 3349
133 Ga0501075_0000412 3300049591 Bacteria 24967
134 Ga0501077_0000765 3300049593 Bacteria 19411
135 Ga0501080_0001638 3300049742 Bacteria 19048
136 Ga0501081_0071083 3300049743 Bacteria 2426
137 Ga0501083_0000454 3300049744 Bacteria 26218
138 nmdc:mga05p37_66440_c1 3300050507 Bacteria 4436
139 nmdc:mga05p37_7680_c1 3300050507 Bacteria 12723
140 nmdc:mga06r32_126664_c1 3300050510 Bacteria 2523
141 nmdc:mga08y16_200040_c1 3300050511 Bacteria 2070
142 nmdc:mga0n895_227597_c1 3300050512 Bacteria 1893
143 nmdc:mga0rr50_44476_c1 3300050513 Bacteria 3257
144 nmdc:mga08x19_47_c1 3300050514 Bacteria 141509
145 nmdc:mga0a205_42052_c1 3300050515 Bacteria 4403
146 nmdc:mga0a205_5106_c1 3300050515 Bacteria 11811
147 nmdc:mga0a205_96243_c1 3300050515 Bacteria 2859
148 Ga0501082_0000109 3300060353 Bacteria 64214
149 Ga0530510_0016624 3300061734 Bacteria 5210
150 2556062820 2554235469 Bacteria 3590176
151 2595089862 2593339131 Bacteria 5116855
152 2712198088 2711768088 Bacteria 3195027
153 2757568249 2757320391 Bacteria 4746095
154 2777762675 2775507177 Bacteria 4384303
155 2777839873 2775507192 Bacteria 4622234
156 2831906675 2831905167 Bacteria 3319172
157 2857463361 2857460504 Bacteria 5194327
158 2858438810 2858438669 Bacteria 2058402
159 2898909177 2898907183 Bacteria 4067722
160 2936340814 2936340661 Bacteria 5139038
161 3006976073 3006973921 Bacteria 4423788
162 Ga0070697_100001756
163 MRS1b_contig_1769440
164 Ga0065712_10098980
165 Ga0070658_10137905
166 Ga0070676_10013741
167 Ga0070660_100002472
168 Ga0070687_100036483
169 Ga0070668_100075644
170 Ga0070669_100000028
171 Ga0070671_100012424
172 Ga0070709_10000085
173 Ga0070710_10104644
174 Ga0070694_100003725
175 Ga0070694_100199971
176 Ga0070708_100009105
177 Ga0070708_100173881
178 Ga0070708_100443654
179 Ga0070706_100000049
180 Ga0070706_100027418
181 Ga0070707_100005093
182 Ga0070698_100004452
183 Ga0070698_100068640
184 Ga0070698_100236504
185 Ga0070699_100000007
186 Ga0070699_100012247
187 Ga0070699_100046893
188 Ga0070679_100108245
189 Ga0070697_100031869
190 Ga0070672_100285207
191 Ga0070695_100101985
192 Ga0070696_100026340
193 Ga0070696_100306514
194 Ga0070693_100178132
195 Ga0070704_100004646
196 Ga0070704_100011216
197 Ga0068860_100000998
198 Ga0068862_100001091
199 Ga0068862_100048976
200 Ga0081455_10005141
201 Ga0081539_10001026
202 Ga0070716_100031435
203 Ga0075428_100112228
204 Ga0075428_100147293
205 Ga0075428_100318720
206 Ga0075431_100003641
207 Ga0075431_100032558
208 Ga0075431_100111949
209 Ga0075433_10167339
210 Ga0075433_10218890
211 Ga0075434_100134165
212 Ga0075434_100206617
213 Ga0075429_100006340
214 Ga0075436_100000031
215 Ga0075435_100084551
216 Ga0075435_100112177
217 Ga0099794_10000009
218 Ga0099794_10018139
219 Ga0099794_10056066
220 Ga0099794_10062186
221 Ga0111539_10014725
222 Ga0114129_10003336
223 Ga0114129_10012572
224 Ga0114129_10853221
225 Ga0105237_10000452
226 Ga0105249_10301775
227 Ga0157372_10306201
228 Ga0157380_10186564
229 Ga0207692_10032364
230 Ga0207680_10119207
231 Ga0207699_10000083
232 Ga0207645_10188149
233 Ga0207705_10028580
234 Ga0207684_10000011
235 Ga0207671_10000088
236 Ga0207662_10166126
237 Ga0207657_10005959
238 Ga0207649_10108667
239 Ga0207652_10038457
240 Ga0207681_10000006
241 Ga0207644_10003501
242 Ga0207665_10018698
243 Ga0207711_10309268
244 Ga0207689_10319094
245 Ga0207698_10199089
246 Ga0209588_1000012
247 Ga0209588_1013775
248 Ga0268265_10000119
249 Ga0268265_10357641
250 Ga0268264_10005297
251 Ga0265334_10010241
252 Ga0265320_10092762
253 Ga0265314_10015233
254 Ga0316576_10000380
255 Ga0316576_10052432
256 Ga0316576_10103795
257 Ga0316578_10025190
258 Ga0316577_10008335
259 Ga0316580_10020930
260 Ga0316574_0040051
261 Ga0316582_0002615
262 Ga0316584_0000303
263 Ga0316584_0206719
264 Ga0395900_0005835
265 Ga0395905_0001270
266 Ga0395905_0001655
267 Ga0316581_0006986
268 Ga0400490_42273
269 Ga0400491_05762
270 Ga0451577_0000704
271 Ga0451577_0001136
272 Ga0451577_0005844
273 Ga0451577_0010725
274 Ga0453683_0086133
275 Ga0453684_0001053
276 Ga0453684_0002267
277 Ga0453684_0002404
278 Ga0453684_0003175
279 Ga0453684_0031167
280 Ga0453684_0372370
281 Ga0451576_0001198
282 Ga0451576_0005290
283 Ga0451576_0411698
284 Ga0451576_0414551
285 Ga0495624_0021557
286 Ga0495624_0134954
287 Ga0495674_0019695
288 Ga0495675_0129977
289 Ga0496109_0467569
290 Ga0501034_0169612
291 Ga0501068_0165588
292 Ga0501071_0214435
293 Ga0501072_0048381
294 Ga0501075_0000412
295 Ga0501077_0000765
296 Ga0501080_0001638
297 Ga0501081_0071083
298 Ga0501083_0000454
299 nmdc:mga05p37_66440_c1
300 nmdc:mga05p37_7680_c1
301 nmdc:mga06r32_126664_c1
302 nmdc:mga08y16_200040_c1
303 nmdc:mga0n895_227597_c1
304 nmdc:mga0rr50_44476_c1
305 nmdc:mga08x19_47_c1
306 nmdc:mga0a205_42052_c1
307 nmdc:mga0a205_5106_c1
308 nmdc:mga0a205_96243_c1
309 Ga0501082_0000109
310 Ga0530510_0016624
311 2556062820
312 2595089862
313 2712198088
314 2757568249
315 2777762675
316 2777839873
317 2831906675
318 2857463361
319 2858438810
320 2898909177
321 2936340814
322 3006976073

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05496

RuvB_N

Holliday junction DNA helicase RuvB P-loop domain

60

218

0.99

PF17864

AAA_lid_4

RuvB AAA lid domain

221

294

0.99

PF05491

RuvB_C

RuvB C-terminal winged helix domain

295

366

0.98

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

95

220

0.96

PF07728

AAA_5

AAA domain (dynein-related subfamily)

94

212

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1in6-assembly1.cif.gz_A thermotoga maritima ruvb k64r mutant 0.9827 23 331
7x5b-assembly1.cif.gz_A crystal structure of ruvb 0.98 24 332
1in7-assembly1.cif.gz_A thermotoga maritima ruvb r170a 0.978 24 331
1in4-assembly1.cif.gz_A thermotoga maritima ruvb holliday junction branch migration motor 0.9771 24 332
6blb-assembly1.cif.gz_A 1.88 angstrom resolution crystal structure holliday junction atp-dependent dna helicase (ruvb) from pseudomonas aeruginosa in complex with adp 0.9769 24 333
ID Description Score Start End Superfamily
1in5A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9937 261 332 1.10.10.10
6blbA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9936 185 259 1.10.8.60
6blbA03 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9893 261 333 1.10.10.10
6blbA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9892 25 184 3.40.50.300
3pfiB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9842 28 185 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A080KC06-F1-model_v4 deleted 0.9989 256 331
AF-X1UK10-F1-model_v4 RuvB-like P-loop domain-containing protein 0.9962 21 126 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A6M1X791-F1-model_v4 deleted 0.9952 25 120
AF-A0A3D6DLI0-F1-model_v4 Holliday junction branch migration DNA helicase RuvB 0.9946 14 138 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
GO:0016887
AF-A0A7Y2ISW1-F1-model_v4 AAA family ATPase 0.9942 30 138 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378

Map