F235453

General Info

Members Datasets Scaffolds Average Seq Length
160 126 145 442

Family's Representative Sequence

Representative Sequence 3300047443|Ga0495687_031535|Ga0495687_031535_799_2280
Length 486
Sequence MPLLDLEKMTAGLSKTAFRHRRLSHEPAPPCLCGVDQQAEGIMREIVIIGGGYAGFYTAWGLEKRLRAGEARVTVVDPRPYMTYQPFLPEVTAGSVEARHAAVSLRRHLRHTRLIAGSAVEIRYADRRVVVRPVNGADYELSYDILVVTAGAVTRTFPIPGLAQQAIGLKHVEEAVAIRDRLMTAFDQAASLPPGAERRRLLTVTFVGGGFSGVEGFGELLSLATAMLRSYPELSIDDLSFHLVEARGRILPEVGDKPGAWVVRSLERRGAHVHLNTQLLTATDGHVVLSNGEEFDSALIVWAAGNASNPIVHNHTDLPVDERGPLVVRPDLRVGTDSEPVPDVWAAGLASPVPEARTVPNAQHAVRQGRLLAKNIAADLRGGRIRNYRHSSLGVVATLGLGQGVFQYKSLVIKGLPAWLMHRGYHVLAVPSWERKIRVLTVWLTAAVFGRDLVSLASVQHPRDAFVTSANPERSGESRARDNAAA

Samples

Sample ID Description Type Environment
1 2508501039 Frankia saprophytica CN3 Isolate Nodule
2 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
3 2643221572 Leifsonia sp. Root60 Isolate Unclassified
4 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
5 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
6 2687453737 Frankia sp. BMG5.36 Isolate Nodule
7 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
8 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
9 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
10 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
11 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
12 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
13 2928153084 Leifsonia sp. 563 Isolate Unclassified
14 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
15 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
16 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
17 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
18 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
19 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
20 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
21 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
22 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
23 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
24 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
25 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
39 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
40 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
42 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
48 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
49 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
50 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
53 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
54 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
55 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
56 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
57 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
58 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
59 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
60 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
63 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
64 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
67 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
68 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
69 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
70 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
71 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
72 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
75 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
76 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
77 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
78 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
79 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
80 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
81 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
82 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
83 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
84 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
85 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
86 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
87 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
88 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
89 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
90 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
91 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
92 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
95 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
96 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
97 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
105 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
106 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
122 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
123 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
124 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
125 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
126 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.75
Metatranscriptomes 1.88
Isolates 9.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.75
Nodule 1.88
Rhizoplane 3.75
Rhizosphere 69.38
Stem 0
Stem Tuber 0
Unclassified 11.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10013479 3300001979 Bacteria 3046
2 JGI24737J22298_10009992 3300001990 Bacteria 3142
3 JGI24735J21928_10009614 3300002067 Bacteria 3100
4 JGI25164J39214_1000947 3300002772 Bacteria 9385
5 JGI25165J46597_1000014 3300003214 Bacteria 390383
6 Ga0006562J51391_1070461 3300003578 Bacteria 17530
7 Ga0006562J51391_1070463 3300003578 Bacteria 17440
8 Ga0055539_1000083 3300003752 Bacteria 121281
9 Ga0055533_1000037 3300003756 Bacteria 255573
10 Ga0055525_1000213 3300003759 Bacteria 64854
11 Ga0055541_1002689 3300003841 Bacteria 3480
12 Ga0070658_10182317 3300005327 Bacteria 1767
13 Ga0070667_100268217 3300005367 Bacteria 1530
14 Ga0068857_100058702 3300005577 Bacteria 3418
15 Ga0075365_10094740 3300006038 Bacteria 2038
16 Ga0075364_10004769 3300006051 Bacteria 7839
17 Ga0075364_10039513 3300006051 Bacteria 3059
18 Ga0105248_10112559 3300009177 Bacteria 3069
19 Ga0105246_10117244 3300011119 Bacteria 1967
20 Ga0157372_10197603 3300013307 Bacteria 2329
21 Ga0157380_10009600 3300014326 Bacteria 6941
22 Ga0224712_10002042 3300022467 Bacteria 4898
23 Ga0209566_100047 3300025225 Bacteria 243995
24 Ga0209674_100001 3300025226 Bacteria 4013750
25 Ga0209563_100001 3300025230 Bacteria 4013775
26 Ga0207427_100041 3300025231 Bacteria 263659
27 Ga0209437_100554 3300025233 Bacteria 24966
28 Ga0209677_100001 3300025253 Bacteria 4013787
29 Ga0209233_1000014 3300025261 Bacteria 996641
30 Ga0209455_1000434 3300025272 Bacteria 32609
31 Ga0207647_10005094 3300025904 Bacteria 9685
32 Ga0207711_10085586 3300025941 Bacteria 2762
33 Ga0207658_10189387 3300025986 Bacteria 1709
34 Ga0207674_10027970 3300026116 Bacteria 5958
35 Ga0307515_10192704 3300028794 Bacteria 1942
36 Ga0307513_10138297 3300031456 Bacteria 2366
37 Ga0307413_10116206 3300031824 Bacteria 1802
38 Ga0307406_10033209 3300031901 Bacteria 3157
39 Ga0395900_0009819 3300037418 Bacteria 9806
40 Ga0395898_0000657 3300037466 Bacteria 62703
41 Ga0451791_0368631 3300041451 Bacteria 3359
42 Ga0451853_1693887 3300041512 Bacteria 3243
43 Ga0466966_0080259 3300044684 Bacteria 2032
44 Ga0466961_0008370 3300044693 Bacteria 6588
45 Ga0466961_0094590 3300044693 Bacteria 1885
46 Ga0466964_0031265 3300044706 Bacteria 2110
47 Ga0466968_0016506 3300044735 Bacteria 2941
48 Ga0466968_0078251 3300044735 Bacteria 1449
49 Ga0466960_0007292 3300044901 Bacteria 4482
50 Ga0466959_0029916 3300045049 Bacteria 4033
51 Ga0466967_0224157 3300045976 Bacteria 1788
52 Ga0495592_0026202 3300046454 Bacteria 4423
53 Ga0495603_0014416 3300046455 Bacteria 4780
54 Ga0495629_0016492 3300046459 Bacteria 5303
55 Ga0495638_0017099 3300046460 Bacteria 4844
56 Ga0495638_0029892 3300046460 Bacteria 3512
57 Ga0495651_0004509 3300046462 Bacteria 10656
58 Ga0495651_0004844 3300046462 Bacteria 10301
59 Ga0495651_0067239 3300046462 Bacteria 2734
60 Ga0495582_0010896 3300046473 Bacteria 5004
61 Ga0495664_0026377 3300046477 Bacteria 3384
62 Ga0495664_0141603 3300046477 Bacteria 1458
63 Ga0495594_0049927 3300046499 Bacteria 2300
64 Ga0495594_0107150 3300046499 Bacteria 1574
65 Ga0495583_0002160 3300046506 Bacteria 17562
66 Ga0495583_0046058 3300046506 Bacteria 2013
67 Ga0495620_0022551 3300046515 Bacteria 3029
68 Ga0495628_0017867 3300046516 Bacteria 5886
69 Ga0495630_0004555 3300046517 Bacteria 9712
70 Ga0495643_0001551 3300046522 Bacteria 20496
71 Ga0495648_0009700 3300046524 Bacteria 7420
72 Ga0495640_0001142 3300046533 Bacteria 20731
73 Ga0495640_0001941 3300046533 Bacteria 16493
74 Ga0495640_0016030 3300046533 Bacteria 5618
75 Ga0495622_0010882 3300046557 Bacteria 4197
76 Ga0495667_0106594 3300046559 Bacteria 1811
77 Ga0495668_0014177 3300046616 Bacteria 4683
78 Ga0495634_0110635 3300046642 Bacteria 1766
79 Ga0495625_0046740 3300046660 Bacteria 3122
80 Ga0495657_0000398 3300046675 Bacteria 40528
81 Ga0495657_0018960 3300046675 Bacteria 4970
82 Ga0495657_0028144 3300046675 Bacteria 3957
83 Ga0495613_0001511 3300046689 Bacteria 17700
84 Ga0495613_0006238 3300046689 Bacteria 8919
85 Ga0495613_0009477 3300046689 Bacteria 7223
86 Ga0495613_0021520 3300046689 Bacteria 4805
87 Ga0495613_0024069 3300046689 Bacteria 4537
88 Ga0495624_0092747 3300046690 Bacteria 1862
89 Ga0495649_0011270 3300046694 Bacteria 5252
90 Ga0495589_0003340 3300046794 Bacteria 8707
91 Ga0495600_0060173 3300046809 Bacteria 2480
92 Ga0495600_0260144 3300046809 Bacteria 1102
93 Ga0495660_0005807 3300046810 Bacteria 7369
94 Ga0495581_0009814 3300047315 Bacteria 5541
95 Ga0495581_0115691 3300047315 Bacteria 1560
96 Ga0495604_0012873 3300047317 Bacteria 6663
97 Ga0495604_0023833 3300047317 Bacteria 4884
98 Ga0495636_0003812 3300047318 Bacteria 5876
99 Ga0495636_0016399 3300047318 Bacteria 2958
100 Ga0495676_0005823 3300047321 Bacteria 11310
101 Ga0495676_0065573 3300047321 Bacteria 2818
102 Ga0495676_0074340 3300047321 Bacteria 2603
103 Ga0495676_0081746 3300047321 Bacteria 2447
104 Ga0495680_0058623 3300047322 Bacteria 2974
105 Ga0495687_001727 3300047443 Bacteria 19345
106 Ga0495687_006368 3300047443 Bacteria 7250
107 Ga0495687_031535 3300047443 Bacteria 2430
108 Ga0495685_001920 3300047447 Bacteria 6421
109 Ga0495685_012156 3300047447 Bacteria 2914
110 Ga0495685_022165 3300047447 Bacteria 2186
111 Ga0495593_0016968 3300047673 Bacteria 4097
112 Ga0495614_0021531 3300048089 Bacteria 2784
113 Ga0496108_0006545 3300048911 Bacteria 9449
114 Ga0496109_0160332 3300048912 Bacteria 2107
115 Ga0496110_0086497 3300048913 Bacteria 2799
116 Ga0496112_0167379 3300048915 Bacteria 2164
117 Ga0496114_0006152 3300048917 Bacteria 9447
118 Ga0496117_0002409 3300048920 Bacteria 23781
119 Ga0496117_0006804 3300048920 Bacteria 11391
120 Ga0496122_0000430 3300048925 Bacteria 88467
121 Ga0496122_0001228 3300048925 Bacteria 43356
122 Ga0496123_0000807 3300048926 Bacteria 50548
123 Ga0496124_0000836 3300048927 Bacteria 50145
124 Ga0496124_0009448 3300048927 Bacteria 10045
125 Ga0496126_0112473 3300048929 Bacteria 2371
126 Ga0501031_0071949 3300049568 Bacteria 2251
127 Ga0501036_0055586 3300049572 Bacteria 3353
128 Ga0501037_0125454 3300049573 Bacteria 1843
129 Ga0501038_0063136 3300049574 Bacteria 3163
130 Ga0501039_0061048 3300049575 Bacteria 2919
131 Ga0501043_0040019 3300049579 Bacteria 3684
132 Ga0501046_0006435 3300049580 Bacteria 10405
133 Ga0501047_0036227 3300049581 Bacteria 4767
134 Ga0501048_0011161 3300049582 Bacteria 6698
135 Ga0501070_0000058 3300049586 Bacteria 94954
136 Ga0501070_0004081 3300049586 Bacteria 12551
137 Ga0501080_0021810 3300049742 Bacteria 5933
138 Ga0501044_0001741 3300049823 Bacteria 25406
139 Ga0501044_0053761 3300049823 Bacteria 4142
140 Ga0501045_0029996 3300049824 Bacteria 3934
141 nmdc:mga00v17_93705_c1 3300050491 Bacteria 1889
142 nmdc:mga0yw44_82702_c1 3300050492 Bacteria 2015
143 Ga0500635_0000097 3300053080 Bacteria 52649
144 Ga0500560_009485 3300053107 Bacteria 2395
145 Ga0500600_0011141 3300053149 Bacteria 5463

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046809 Ga0495600_0260144 Ga0495600_0260144_81_1088 332
2 3300046810 Ga0495660_0005807 Ga0495660_0005807_6200_7327 334
3 3300044706 Ga0466964_0031265 Ga0466964_0031265_49_1185 359
4 3300046559 Ga0495667_0106594 Ga0495667_0106594_47_1303 386
5 3300006051 Ga0075364_10039513 Ga0075364_100395133 388
6 3300047447 Ga0495685_012156 Ga0495685_012156_21_1259 394
7 3300044735 Ga0466968_0078251 Ga0466968_0078251_53_1390 402
8 3300049823 Ga0501044_0001741 Ga0501044_0001741_18922_20247 402
9 3300046506 Ga0495583_0002160 Ga0495583_0002160_9948_11303 405
10 3300046515 Ga0495620_0022551 Ga0495620_0022551_518_1873 405
11 3300046516 Ga0495628_0017867 Ga0495628_0017867_424_1779 405
12 3300046522 Ga0495643_0001551 Ga0495643_0001551_11378_12733 405
13 3300046524 Ga0495648_0009700 Ga0495648_0009700_3884_5239 405
14 3300046533 Ga0495640_0001941 Ga0495640_0001941_8353_9708 405
15 3300046616 Ga0495668_0014177 Ga0495668_0014177_98_1453 405
16 3300046660 Ga0495625_0046740 Ga0495625_0046740_75_1430 405
17 3300046675 Ga0495657_0000398 Ga0495657_0000398_7390_8745 405
18 3300046689 Ga0495613_0009477 Ga0495613_0009477_5528_6883 405
19 3300046694 Ga0495649_0011270 Ga0495649_0011270_2176_3531 405
20 3300046794 Ga0495589_0003340 Ga0495589_0003340_3426_4781 405
21 3300047315 Ga0495581_0115691 Ga0495581_0115691_139_1494 405
22 3300047321 Ga0495676_0074340 Ga0495676_0074340_873_2228 405
23 3300047443 Ga0495687_006368 Ga0495687_006368_5462_6817 405
24 3300047447 Ga0495685_022165 Ga0495685_022165_434_1789 405
25 3300048089 Ga0495614_0021531 Ga0495614_0021531_332_1687 405
26 3300002772 JGI25164J39214_1000947 JGI25164J39214_10009474 407
27 3300003214 JGI25165J46597_1000014 JGI25165J46597_1000014287 407
28 3300025231 Ga0207427_100041 Ga0207427_10004176 407
29 3300025233 Ga0209437_100554 Ga0209437_10055417 407
30 3300025261 Ga0209233_1000014 Ga0209233_1000014695 407
31 3300025272 Ga0209455_1000434 Ga0209455_100043431 409
32 3300046557 Ga0495622_0010882 Ga0495622_0010882_1513_2865 409
33 3300037418 Ga0395900_0009819 Ga0395900_0009819_178_1557 411
34 3300037466 Ga0395898_0000657 Ga0395898_0000657_17798_19177 411
35 3300031824 Ga0307413_10116206 Ga0307413_101162061 416
36 3300048925 Ga0496122_0000430 Ga0496122_0000430_70078_71433 417
37 3300048926 Ga0496123_0000807 Ga0496123_0000807_32161_33516 417
38 3300048927 Ga0496124_0000836 Ga0496124_0000836_9004_10359 417
39 3300048927 Ga0496124_0009448 Ga0496124_0009448_576_1919 417
40 3300031456 Ga0307513_10138297 Ga0307513_101382972 418
41 3300048915 Ga0496112_0167379 Ga0496112_0167379_282_1619 418
42 iso_pu_bacteria 2675903059 2676485598 418
43 3300002067 JGI24735J21928_10009614 JGI24735J21928_100096143 419
44 3300003578 Ga0006562J51391_1070461 Ga0006562J51391_10704619 419
45 3300003578 Ga0006562J51391_1070463 Ga0006562J51391_107046317 419
46 3300028794 Ga0307515_10192704 Ga0307515_101927042 419
47 3300046460 Ga0495638_0017099 Ga0495638_0017099_2947_4302 419
48 3300046499 Ga0495594_0049927 Ga0495594_0049927_104_1459 419
49 3300048920 Ga0496117_0002409 Ga0496117_0002409_1908_3260 419
50 3300053107 Ga0500560_009485 Ga0500560_009485_163_1548 419
51 3300041451 Ga0451791_0368631 Ga0451791_0368631_1161_2477 420
52 3300046506 Ga0495583_0046058 Ga0495583_0046058_673_1989 420
53 3300047318 Ga0495636_0003812 Ga0495636_0003812_1666_2982 420
54 3300047443 Ga0495687_001727 Ga0495687_001727_1683_2999 420
55 3300047447 Ga0495685_001920 Ga0495685_001920_1146_2462 420
56 3300053149 Ga0500600_0011141 Ga0500600_0011141_2299_3681 420
57 3300005327 Ga0070658_10182317 Ga0070658_101823172 421
58 3300031901 Ga0307406_10033209 Ga0307406_100332092 421
59 3300041512 Ga0451853_1693887 Ga0451853_1693887_1491_2873 421
60 3300044693 Ga0466961_0094590 Ga0466961_0094590_193_1527 421
61 3300047443 Ga0495687_031535 Ga0495687_031535_799_2280 421
62 3300049586 Ga0501070_0004081 Ga0501070_0004081_10141_11460 421
63 3300006038 Ga0075365_10094740 Ga0075365_100947402 422
64 3300006051 Ga0075364_10004769 Ga0075364_100047694 422
65 3300045976 Ga0466967_0224157 Ga0466967_0224157_312_1652 422
66 3300050491 nmdc:mga00v17_93705_c1 nmdc:mga00v17_93705_c1_299_1621 422
67 3300050492 nmdc:mga0yw44_82702_c1 nmdc:mga0yw44_82702_c1_336_1658 422
68 iso_pu_bacteria 2919443155 2919445296 422
69 3300048911 Ga0496108_0006545 Ga0496108_0006545_5655_6980 423
70 3300048912 Ga0496109_0160332 Ga0496109_0160332_574_1899 423
71 3300048913 Ga0496110_0086497 Ga0496110_0086497_133_1458 423
72 3300048917 Ga0496114_0006152 Ga0496114_0006152_510_1835 423
73 3300048925 Ga0496122_0001228 Ga0496122_0001228_30676_32088 423
74 3300009177 Ga0105248_10112559 Ga0105248_101125592 424
75 3300025941 Ga0207711_10085586 Ga0207711_100855863 424
76 3300046462 Ga0495651_0004509 Ga0495651_0004509_4957_6330 424
77 iso_pu_bacteria 2508501039 2508673949 424
78 iso_pu_bacteria 2687453737 2689962339 424
79 3300049574 Ga0501038_0063136 Ga0501038_0063136_159_1592 425
80 3300011119 Ga0105246_10117244 Ga0105246_101172442 426
81 3300014326 Ga0157380_10009600 Ga0157380_100096004 426
82 3300046473 Ga0495582_0010896 Ga0495582_0010896_2990_4339 426
83 3300046499 Ga0495594_0107150 Ga0495594_0107150_207_1556 426
84 3300046517 Ga0495630_0004555 Ga0495630_0004555_3209_4558 426
85 3300046689 Ga0495613_0021520 Ga0495613_0021520_100_1449 426
86 3300047315 Ga0495581_0009814 Ga0495581_0009814_511_1860 426
87 3300047322 Ga0495680_0058623 Ga0495680_0058623_1554_2903 426
88 3300048929 Ga0496126_0112473 Ga0496126_0112473_524_1873 426
89 3300049586 Ga0501070_0000058 Ga0501070_0000058_44639_45988 426
90 iso_pu_bacteria 2919055335 2919055871 426
91 iso_pu_bacteria 2928153084 2928153996 426
92 3300005367 Ga0070667_100268217 Ga0070667_1002682171 427
93 3300013307 Ga0157372_10197603 Ga0157372_101976032 427
94 3300022467 Ga0224712_10002042 Ga0224712_100020424 427
95 3300046454 Ga0495592_0026202 Ga0495592_0026202_2434_3795 427
96 3300046477 Ga0495664_0026377 Ga0495664_0026377_572_1936 427
97 3300046477 Ga0495664_0141603 Ga0495664_0141603_18_1379 427
98 3300046533 Ga0495640_0001142 Ga0495640_0001142_426_1787 427
99 3300046642 Ga0495634_0110635 Ga0495634_0110635_103_1464 427
100 3300046675 Ga0495657_0028144 Ga0495657_0028144_2356_3717 427
101 3300046689 Ga0495613_0006238 Ga0495613_0006238_2149_3510 427
102 3300046690 Ga0495624_0092747 Ga0495624_0092747_439_1800 427
103 3300046809 Ga0495600_0060173 Ga0495600_0060173_69_1430 427
104 3300047317 Ga0495604_0023833 Ga0495604_0023833_1158_2519 427
105 3300047321 Ga0495676_0005823 Ga0495676_0005823_7192_8553 427
106 3300053080 Ga0500635_0000097 Ga0500635_0000097_3588_4922 427
107 iso_pu_bacteria 2837268691 2837269990 427
108 3300001979 JGI24740J21852_10013479 JGI24740J21852_100134792 428
109 3300001990 JGI24737J22298_10009992 JGI24737J22298_100099922 428
110 3300003752 Ga0055539_1000083 Ga0055539_1000083116 428
111 3300003756 Ga0055533_1000037 Ga0055533_1000037241 428
112 3300003759 Ga0055525_1000213 Ga0055525_100021318 428
113 3300003841 Ga0055541_1002689 Ga0055541_10026892 428
114 3300005577 Ga0068857_100058702 Ga0068857_1000587022 428
115 3300025225 Ga0209566_100047 Ga0209566_100047197 428
116 3300025226 Ga0209674_100001 Ga0209674_1000012390 428
117 3300025230 Ga0209563_100001 Ga0209563_1000012390 428
118 3300025253 Ga0209677_100001 Ga0209677_1000012390 428
119 3300025904 Ga0207647_10005094 Ga0207647_100050942 428
120 3300025986 Ga0207658_10189387 Ga0207658_101893872 428
121 3300026116 Ga0207674_10027970 Ga0207674_100279704 428
122 3300044684 Ga0466966_0080259 Ga0466966_0080259_462_1817 428
123 3300044693 Ga0466961_0008370 Ga0466961_0008370_3729_5084 428
124 3300044735 Ga0466968_0016506 Ga0466968_0016506_945_2300 428
125 3300044901 Ga0466960_0007292 Ga0466960_0007292_1614_2969 428
126 3300045049 Ga0466959_0029916 Ga0466959_0029916_1179_2534 428
127 3300046455 Ga0495603_0014416 Ga0495603_0014416_2805_4196 428
128 3300046459 Ga0495629_0016492 Ga0495629_0016492_73_1464 428
129 3300046460 Ga0495638_0029892 Ga0495638_0029892_417_1814 428
130 3300046462 Ga0495651_0004844 Ga0495651_0004844_8575_9933 428
131 3300046462 Ga0495651_0067239 Ga0495651_0067239_920_2275 428
132 3300046533 Ga0495640_0016030 Ga0495640_0016030_1673_3028 428
133 3300046675 Ga0495657_0018960 Ga0495657_0018960_495_1850 428
134 3300046689 Ga0495613_0001511 Ga0495613_0001511_2302_3657 428
135 3300046689 Ga0495613_0024069 Ga0495613_0024069_592_1947 428
136 3300047317 Ga0495604_0012873 Ga0495604_0012873_3748_5103 428
137 3300047318 Ga0495636_0016399 Ga0495636_0016399_823_2178 428
138 3300047321 Ga0495676_0065573 Ga0495676_0065573_1243_2598 428
139 3300047321 Ga0495676_0081746 Ga0495676_0081746_1000_2391 428
140 3300047673 Ga0495593_0016968 Ga0495593_0016968_1861_3216 428
141 3300048920 Ga0496117_0006804 Ga0496117_0006804_3794_5134 428
142 3300049568 Ga0501031_0071949 Ga0501031_0071949_260_1684 428
143 3300049572 Ga0501036_0055586 Ga0501036_0055586_1710_3134 428
144 3300049573 Ga0501037_0125454 Ga0501037_0125454_305_1729 428
145 3300049575 Ga0501039_0061048 Ga0501039_0061048_62_1486 428
146 3300049579 Ga0501043_0040019 Ga0501043_0040019_135_1559 428
147 3300049580 Ga0501046_0006435 Ga0501046_0006435_8776_10200 428
148 3300049581 Ga0501047_0036227 Ga0501047_0036227_965_2389 428
149 3300049582 Ga0501048_0011161 Ga0501048_0011161_3264_4688 428
150 3300049742 Ga0501080_0021810 Ga0501080_0021810_397_1821 428
151 3300049823 Ga0501044_0053761 Ga0501044_0053761_1509_2873 428
152 3300049824 Ga0501045_0029996 Ga0501045_0029996_870_2294 428
153 iso_pu_bacteria 2616644814 2616698878 428
154 iso_pu_bacteria 2643221572 2643876151 428
155 iso_pu_bacteria 2643221669 2644383206 428
156 iso_pu_bacteria 2773857921 2774843558 428
157 iso_pu_bacteria 2816332119 2816426514 428
158 iso_pu_bacteria 2919523602 2919523681 428
159 iso_pu_bacteria 2946041624 2946042433 428
160 iso_pu_bacteria 8003314358 8003324092 428

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

44

369

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pf4-assembly1.cif.gz_A crystal structure of bs-cspb in complex with r(gucuuua) 0.7419 70 95
5jwb-assembly1.cif.gz_A structure of ndh2 from plasmodium falciparum in complex with nadh 0.697 3 401
5yjw-assembly1.cif.gz_A-2 structure of the ndi1 protein from saccharomyces cerevisiae in complex with the competitive inhibitor, stigmatellin. 0.6956 3 402
5jwb-assembly1.cif.gz_H structure of ndh2 from plasmodium falciparum in complex with nadh 0.6931 3 401
5kmp-assembly1.cif.gz_A the structure of g164e variant of type ii nadh dehydrogenase from caldalkalibacillus thermarum 0.6914 3 394
ID Description Score Start End Superfamily
1xhcA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8414 108 255 3.50.50.60
3fg2P02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8239 109 255 3.50.50.60
af_A0A1D6LF14_1_79_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8228 189 250 3.50.50.60
1xhcA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8163 108 255 3.50.50.60
af_P9WHH5_150_268_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8125 155 257 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A6J4Q0E6-F1-model_v4 NADH dehydrogenase (EC 1.6.99.3) 0.8433 98 277 GO:0003954
GO:0006116
AF-A0A4Q2CZL3-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.8212 134 267 GO:0003954
GO:0005739
GO:0006116
AF-A0A6B3FJZ1-F1-model_v4 FAD-dependent oxidoreductase 0.8069 163 277 GO:0003954
GO:0006116
AF-A0A6J4Q0E6-F1-model_v4 NADH dehydrogenase (EC 1.6.99.3) 0.796 98 277 GO:0003954
GO:0006116
AF-A0A6B3FJZ1-F1-model_v4 FAD-dependent oxidoreductase 0.7869 163 277 GO:0003954
GO:0006116

Feature Viewer

pLDDT pTM Quality
73.37 0.72 High
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Predicted Structure (AlphaFold2)

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