F235384

General Info

Members Datasets Scaffolds Average Seq Length
160 101 153 312

Family's Representative Sequence

Representative Sequence 3300046524|Ga0495648_0036946|Ga0495648_0036946_979_1971
Length 330
Sequence LQNLQLKNLPKMCRKQTSLIILYILLPFLALAQFKNDPAFRVVPLGVLGGIDESNLSAYMLATAGSDKYICLDAGTLHYGIQKAVANKVFTVPGDKVLKQYIKGYFISHAHLDHIAGLIINSPEDSTKNIYGLQGTVETIKTHYFTWESWANFADQGETPVLKKYHYQLLTPGTETTVENTDLKVQAFPLSHSNLTSTAFLVQSHDAYILYLGDTGPDAIEKSNNLQNLWQAITPLIKNKKLKAILIEVSFPNEQPDKTLFGHLTPHWLMAEMDKLATLAGSDELKGLNIVVTHLKPPVSNIGKIKTQLKTANKLQLNLIYPEQGKALNF

Samples

Sample ID Description Type Environment
1 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
2 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
3 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
4 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
5 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
6 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
7 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
8 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
9 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
10 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
17 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
18 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
19 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
20 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
45 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
46 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
47 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
69 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
73 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
74 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
75 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
76 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
77 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
78 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
79 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
80 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
81 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
82 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
83 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
84 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
85 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
88 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
89 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
90 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
95 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
96 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
97 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
98 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
99 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
100 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
101 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.62
Metatranscriptomes 0
Isolates 4.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.75
Nodule 0
Rhizoplane 1.25
Rhizosphere 78.75
Stem 0
Stem Tuber 0
Unclassified 11.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10000796 3300001990 Bacteria 11186
2 JGI24735J21928_10000008 3300002067 Bacteria 319819
3 JGI25162J39368_1000047 3300002737 Viruses 167507
4 JGI25162J39368_1000183 3300002737 Bacteria 67086
5 rootH2_10013605 3300003320 Bacteria 52813
6 rootH2_10060254 3300003320 Bacteria 17516
7 rootH2_10180833 3300003320 Unclassified 3035
8 rootL2_10071361 3300003322 Bacteria 3686
9 rootL2_10104135 3300003322 Bacteria 9618
10 rootH1_10035826 3300003323 Bacteria 1504
11 rootH1_10085007 3300003323 Bacteria 3018
12 rootH1_10254452 3300003323 Bacteria 3229
13 Ga0065714_10067958 3300005288 Bacteria 5068
14 Ga0070658_10220424 3300005327 Bacteria 1604
15 Ga0070676_10000619 3300005328 Bacteria 17345
16 Ga0068869_100277603 3300005334 Bacteria 1346
17 Ga0068868_100019537 3300005338 Bacteria 5077
18 Ga0070660_100023172 3300005339 Bacteria 4598
19 Ga0070673_100007135 3300005364 Bacteria 7339
20 Ga0068867_100007963 3300005459 Bacteria 7486
21 Ga0068853_100021383 3300005539 Bacteria 5394
22 Ga0068853_100168383 3300005539 Bacteria 1981
23 Ga0068855_100000519 3300005563 Bacteria 47297
24 Ga0068855_100016939 3300005563 Bacteria 8764
25 Ga0068855_100021626 3300005563 Bacteria 7715
26 Ga0068855_100068188 3300005563 Bacteria 4142
27 Ga0068857_100295385 3300005577 Bacteria 1493
28 Ga0068856_100000092 3300005614 Bacteria 84781
29 Ga0068856_100039798 3300005614 Bacteria 4615
30 Ga0068852_100044537 3300005616 Bacteria 3769
31 Ga0068860_100111884 3300005843 Bacteria 2611
32 Ga0068862_100037133 3300005844 Bacteria 4128
33 Ga0075366_10000505 3300006195 Bacteria 18064
34 Ga0097621_100000247 3300006237 Bacteria 36324
35 Ga0068871_100003906 3300006358 Bacteria 10272
36 Ga0068865_100000076 3300006881 Bacteria 51732
37 Ga0105240_10000173 3300009093 Bacteria 131281
38 Ga0105240_10084529 3300009093 Bacteria 3891
39 Ga0105240_10127895 3300009093 Bacteria 3050
40 Ga0105240_10220782 3300009093 Bacteria 2208
41 Ga0105241_10010482 3300009174 Bacteria 6798
42 Ga0105242_10003180 3300009176 Bacteria 12809
43 Ga0105237_10002957 3300009545 Bacteria 20562
44 Ga0105237_10004078 3300009545 Bacteria 17033
45 Ga0105237_10008782 3300009545 Bacteria 10901
46 Ga0105238_10010890 3300009551 Bacteria 9140
47 Ga0105239_10000162 3300010375 Bacteria 95804
48 Ga0105239_10000703 3300010375 Bacteria 47494
49 Ga0105239_10000816 3300010375 Bacteria 44236
50 Ga0105239_10003173 3300010375 Bacteria 20361
51 Ga0105239_10006085 3300010375 Bacteria 14049
52 Ga0105239_10417745 3300010375 Bacteria 1519
53 Ga0105239_10509450 3300010375 Bacteria 1369
54 Ga0157371_10062130 3300013102 Bacteria 2648
55 Ga0157374_10000379 3300013296 Bacteria 40932
56 Ga0157374_10001476 3300013296 Bacteria 19869
57 Ga0157378_10035553 3300013297 Bacteria 4407
58 Ga0163162_10000082 3300013306 Bacteria 86888
59 Ga0163162_10533481 3300013306 Bacteria 1303
60 Ga0157372_10002043 3300013307 Bacteria 21955
61 Ga0157372_10029584 3300013307 Bacteria 5983
62 Ga0209437_100089 3300025233 Bacteria 250476
63 Ga0209026_1002723 3300025250 Bacteria 6355
64 Ga0209026_1005778 3300025250 Bacteria 3219
65 Ga0209129_1007113 3300025258 Bacteria 3415
66 Ga0207645_10002749 3300025907 Bacteria 13705
67 Ga0207654_10009865 3300025911 Bacteria 4857
68 Ga0207654_10047663 3300025911 Bacteria 2449
69 Ga0207695_10000053 3300025913 Bacteria 396740
70 Ga0207695_10031857 3300025913 Bacteria 5776
71 Ga0207695_10035141 3300025913 Bacteria 5439
72 Ga0207695_10092308 3300025913 Bacteria 3038
73 Ga0207695_10160686 3300025913 Bacteria 2178
74 Ga0207695_10271396 3300025913 Bacteria 1592
75 Ga0207671_10002724 3300025914 Bacteria 18482
76 Ga0207671_10006180 3300025914 Bacteria 10754
77 Ga0207671_10016347 3300025914 Bacteria 5771
78 Ga0207671_10021841 3300025914 Bacteria 4849
79 Ga0207657_10057769 3300025919 Bacteria 3342
80 Ga0207694_10015358 3300025924 Bacteria 5776
81 Ga0207686_10041185 3300025934 Bacteria 2815
82 Ga0207704_10000189 3300025938 Bacteria 32372
83 Ga0207689_10348377 3300025942 Bacteria 1231
84 Ga0207667_10001611 3300025949 Bacteria 28382
85 Ga0207667_10005697 3300025949 Bacteria 15190
86 Ga0207667_10017043 3300025949 Bacteria 8195
87 Ga0207667_10063957 3300025949 Bacteria 3843
88 Ga0207667_10098341 3300025949 Bacteria 3020
89 Ga0207651_10004706 3300025960 Bacteria 6929
90 Ga0207677_10012681 3300026023 Bacteria 4856
91 Ga0207702_10003844 3300026078 Bacteria 13545
92 Ga0207676_10420679 3300026095 Bacteria 1253
93 Ga0207674_10040221 3300026116 Bacteria 4845
94 Ga0207698_10298126 3300026142 Bacteria 1499
95 Ga0268265_10063350 3300028380 Bacteria 2844
96 Ga0268264_10300391 3300028381 Bacteria 1511
97 Ga0307517_10000429 3300028786 Bacteria 72171
98 Ga0307515_10001879 3300028794 Bacteria 46722
99 Ga0307515_10007245 3300028794 Bacteria 21963
100 Ga0307515_10155403 3300028794 Bacteria 2364
101 Ga0265338_10013311 3300028800 Bacteria 9297
102 Ga0307507_10000032 3300033179 Bacteria 194155
103 Ga0307510_10001152 3300033180 Bacteria 28416
104 Ga0395905_0000716 3300037471 Bacteria 43859
105 Ga0395901_0146875 3300038443 Bacteria 2478
106 Ga0466957_0011010 3300044842 Bacteria 5202
107 Ga0495650_0000119 3300046471 Bacteria 185719
108 Ga0495650_0033089 3300046471 Bacteria 2305
109 Ga0495585_0000173 3300046492 Bacteria 69500
110 Ga0495585_0003557 3300046492 Bacteria 10458
111 Ga0495583_0010045 3300046506 Bacteria 5576
112 Ga0495606_0000008 3300046507 Bacteria 321373
113 Ga0495606_0008730 3300046507 Bacteria 8722
114 Ga0495606_0059804 3300046507 Bacteria 2443
115 Ga0495610_0002038 3300046512 Bacteria 17252
116 Ga0495610_0050438 3300046512 Bacteria 2032
117 Ga0495616_0045978 3300046513 Bacteria 2206
118 Ga0495637_0013908 3300046520 Bacteria 3810
119 Ga0495648_0007737 3300046524 Bacteria 8555
120 Ga0495648_0036946 3300046524 Bacteria 3144
121 Ga0495654_0036196 3300046530 Bacteria 2482
122 Ga0495633_0000032 3300046558 Bacteria 193765
123 Ga0495633_0022405 3300046558 Bacteria 3144
124 Ga0495668_0000667 3300046616 Bacteria 41283
125 Ga0495668_0106710 3300046616 Bacteria 1532
126 Ga0495625_0000017 3300046660 Bacteria 299728
127 Ga0495625_0000535 3300046660 Bacteria 55840
128 Ga0495625_0000742 3300046660 Bacteria 45511
129 Ga0495625_0016995 3300046660 Bacteria 5705
130 Ga0495625_0105526 3300046660 Bacteria 1930
131 Ga0495625_0140171 3300046660 Bacteria 1631
132 Ga0495661_0000778 3300046665 Bacteria 30455
133 Ga0495661_0008137 3300046665 Bacteria 7266
134 Ga0495661_0129931 3300046665 Bacteria 1381
135 Ga0495658_0005519 3300046683 Bacteria 6218
136 Ga0495649_0000121 3300046694 Bacteria 68443
137 Ga0495600_0084298 3300046809 Bacteria 2074
138 Ga0495660_0011892 3300046810 Bacteria 5049
139 Ga0495687_006288 3300047443 Bacteria 7321
140 Ga0495686_0001124 3300047472 Bacteria 31635
141 Ga0495686_0004742 3300047472 Bacteria 11009
142 Ga0495686_0018957 3300047472 Bacteria 4605
143 Ga0495614_0004858 3300048089 Bacteria 6068
144 Ga0496115_0108103 3300048918 Bacteria 2284
145 nmdc:mga0k408_1428_c1 3300050493 Bacteria 12932
146 nmdc:mga0k408_31093_c1 3300050493 Bacteria 3046
147 Ga0500635_0009144 3300053080 Bacteria 2741
148 Ga0500578_0018686 3300053086 Bacteria 4453
149 Ga0500608_016900 3300053122 Unclassified 3305
150 Ga0500618_000040 3300053125 Bacteria 112548
151 Ga0500652_004447 3300053131 Bacteria 4343
152 Ga0500624_000247 3300053157 Bacteria 19105
153 Ga0500634_0094684 3300053161 Unclassified 1508

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028800 Ga0265338_10013311 Ga0265338_100133116 271
2 3300046513 Ga0495616_0045978 Ga0495616_0045978_31_846 271
3 3300046660 Ga0495625_0016995 Ga0495625_0016995_4869_5684 271
4 3300046660 Ga0495625_0105526 Ga0495625_0105526_948_1850 282
5 3300013306 Ga0163162_10533481 Ga0163162_105334812 283
6 3300025913 Ga0207695_10035141 Ga0207695_100351412 288
7 3300005614 Ga0068856_100039798 Ga0068856_1000397983 291
8 3300003323 rootH1_10085007 rootH1_100850072 295
9 3300002737 JGI25162J39368_1000047 JGI25162J39368_100004760 298
10 3300002737 JGI25162J39368_1000183 JGI25162J39368_100018365 298
11 3300010375 Ga0105239_10000816 Ga0105239_1000081630 298
12 3300025233 Ga0209437_100089 Ga0209437_100089127 298
13 3300025258 Ga0209129_1007113 Ga0209129_10071133 298
14 3300028794 Ga0307515_10155403 Ga0307515_101554033 299
15 3300046660 Ga0495625_0000535 Ga0495625_0000535_28728_29735 299
16 3300038443 Ga0395901_0146875 Ga0395901_0146875_330_1238 300
17 3300006195 Ga0075366_10000505 Ga0075366_1000050522 301
18 3300050493 nmdc:mga0k408_1428_c1 nmdc:mga0k408_1428_c1_434_1396 301
19 3300009093 Ga0105240_10084529 Ga0105240_100845295 302
20 3300009545 Ga0105237_10008782 Ga0105237_1000878210 302
21 3300010375 Ga0105239_10003173 Ga0105239_100031737 302
22 3300025913 Ga0207695_10271396 Ga0207695_102713961 302
23 3300025914 Ga0207671_10006180 Ga0207671_1000618012 302
24 3300025949 Ga0207667_10063957 Ga0207667_100639571 302
25 3300028794 Ga0307515_10007245 Ga0307515_1000724510 302
26 3300033179 Ga0307507_10000032 Ga0307507_10000032159 302
27 3300046492 Ga0495585_0003557 Ga0495585_0003557_1397_2359 302
28 3300046530 Ga0495654_0036196 Ga0495654_0036196_1027_1989 302
29 3300046660 Ga0495625_0000742 Ga0495625_0000742_30747_31709 302
30 3300046683 Ga0495658_0005519 Ga0495658_0005519_2938_3900 302
31 3300046809 Ga0495600_0084298 Ga0495600_0084298_55_1017 302
32 3300048089 Ga0495614_0004858 Ga0495614_0004858_1153_2115 302
33 3300053125 Ga0500618_000040 Ga0500618_000040_65268_66230 302
34 3300005288 Ga0065714_10067958 Ga0065714_100679585 303
35 3300005563 Ga0068855_100068188 Ga0068855_1000681883 303
36 3300009093 Ga0105240_10127895 Ga0105240_101278954 303
37 3300025913 Ga0207695_10092308 Ga0207695_100923081 303
38 3300025949 Ga0207667_10005697 Ga0207667_1000569714 303
39 3300046512 Ga0495610_0050438 Ga0495610_0050438_357_1268 303
40 3300053131 Ga0500652_004447 Ga0500652_004447_2539_3489 303
41 3300028794 Ga0307515_10001879 Ga0307515_100018797 304
42 3300046471 Ga0495650_0033089 Ga0495650_0033089_17_976 305
43 3300046524 Ga0495648_0007737 Ga0495648_0007737_5291_6253 305
44 3300046558 Ga0495633_0000032 Ga0495633_0000032_68247_69209 305
45 3300046616 Ga0495668_0000667 Ga0495668_0000667_28279_29241 305
46 3300047472 Ga0495686_0001124 Ga0495686_0001124_19634_20638 305
47 3300025250 Ga0209026_1005778 Ga0209026_10057783 308
48 3300026078 Ga0207702_10003844 Ga0207702_100038447 309
49 3300044842 Ga0466957_0011010 Ga0466957_0011010_3445_4395 309
50 3300053086 Ga0500578_0018686 Ga0500578_0018686_2669_3619 309
51 3300010375 Ga0105239_10000162 Ga0105239_1000016224 310
52 3300046810 Ga0495660_0011892 Ga0495660_0011892_1946_2899 310
53 3300046507 Ga0495606_0059804 Ga0495606_0059804_499_1452 312
54 3300003322 rootL2_10071361 rootL2_100713612 313
55 3300005327 Ga0070658_10220424 Ga0070658_102204241 314
56 3300025250 Ga0209026_1002723 Ga0209026_10027234 314
57 3300047472 Ga0495686_0004742 Ga0495686_0004742_8414_9358 314
58 iso_pu_bacteria 2852623160 2852625150 314
59 iso_pu_bacteria 2884933994 2884934166 314
60 3300003320 rootH2_10013605 rootH2_1001360514 315
61 3300005328 Ga0070676_10000619 Ga0070676_1000061916 315
62 3300005334 Ga0068869_100277603 Ga0068869_1002776032 315
63 3300005338 Ga0068868_100019537 Ga0068868_1000195373 315
64 3300005339 Ga0070660_100023172 Ga0070660_1000231724 315
65 3300005364 Ga0070673_100007135 Ga0070673_1000071354 315
66 3300005459 Ga0068867_100007963 Ga0068867_1000079635 315
67 3300005539 Ga0068853_100021383 Ga0068853_1000213837 315
68 3300005539 Ga0068853_100168383 Ga0068853_1001683831 315
69 3300005563 Ga0068855_100000519 Ga0068855_10000051920 315
70 3300005563 Ga0068855_100021626 Ga0068855_1000216266 315
71 3300005616 Ga0068852_100044537 Ga0068852_1000445371 315
72 3300006237 Ga0097621_100000247 Ga0097621_10000024735 315
73 3300006358 Ga0068871_100003906 Ga0068871_1000039063 315
74 3300006881 Ga0068865_100000076 Ga0068865_10000007637 315
75 3300009093 Ga0105240_10220782 Ga0105240_102207822 315
76 3300009174 Ga0105241_10010482 Ga0105241_100104824 315
77 3300009176 Ga0105242_10003180 Ga0105242_1000318012 315
78 3300009545 Ga0105237_10002957 Ga0105237_1000295718 315
79 3300009551 Ga0105238_10010890 Ga0105238_100108908 315
80 3300010375 Ga0105239_10417745 Ga0105239_104177452 315
81 3300013296 Ga0157374_10001476 Ga0157374_1000147617 315
82 3300013297 Ga0157378_10035553 Ga0157378_100355531 315
83 3300013306 Ga0163162_10000082 Ga0163162_1000008210 315
84 3300013307 Ga0157372_10029584 Ga0157372_100295845 315
85 3300025907 Ga0207645_10002749 Ga0207645_100027495 315
86 3300025911 Ga0207654_10047663 Ga0207654_100476631 315
87 3300025914 Ga0207671_10021841 Ga0207671_100218416 315
88 3300025919 Ga0207657_10057769 Ga0207657_100577692 315
89 3300025924 Ga0207694_10015358 Ga0207694_100153582 315
90 3300025934 Ga0207686_10041185 Ga0207686_100411854 315
91 3300025938 Ga0207704_10000189 Ga0207704_100001896 315
92 3300025942 Ga0207689_10348377 Ga0207689_103483771 315
93 3300025949 Ga0207667_10001611 Ga0207667_1000161119 315
94 3300025960 Ga0207651_10004706 Ga0207651_100047068 315
95 3300026023 Ga0207677_10012681 Ga0207677_100126816 315
96 3300026142 Ga0207698_10298126 Ga0207698_102981261 315
97 3300028786 Ga0307517_10000429 Ga0307517_1000042932 315
98 3300033180 Ga0307510_10001152 Ga0307510_1000115217 315
99 3300046507 Ga0495606_0008730 Ga0495606_0008730_6780_7727 315
100 3300047443 Ga0495687_006288 Ga0495687_006288_653_1600 315
101 3300053122 Ga0500608_016900 Ga0500608_016900_1106_2053 315
102 iso_pu_bacteria 2919437846 2919442723 315
103 3300003323 rootH1_10035826 rootH1_100358263 316
104 3300025914 Ga0207671_10002724 Ga0207671_1000272417 316
105 3300048918 Ga0496115_0108103 Ga0496115_0108103_657_1607 316
106 3300053080 Ga0500635_0009144 Ga0500635_0009144_695_1645 316
107 iso_pu_bacteria 2599185184 2599476625 316
108 iso_pu_bacteria 2928078545 2928078574 316
109 iso_pu_bacteria 2928147474 2928151749 316
110 iso_pu_bacteria 2932082852 2932084363 316
111 3300005614 Ga0068856_100000092 Ga0068856_10000009229 317
112 3300037471 Ga0395905_0000716 Ga0395905_0000716_15413_16372 317
113 3300009093 Ga0105240_10000173 Ga0105240_1000017352 318
114 3300009545 Ga0105237_10004078 Ga0105237_100040782 318
115 3300010375 Ga0105239_10000703 Ga0105239_1000070330 318
116 3300010375 Ga0105239_10006085 Ga0105239_1000608514 318
117 3300010375 Ga0105239_10509450 Ga0105239_105094502 318
118 3300013296 Ga0157374_10000379 Ga0157374_100003792 318
119 3300025911 Ga0207654_10009865 Ga0207654_100098652 318
120 3300025913 Ga0207695_10000053 Ga0207695_10000053105 318
121 3300025913 Ga0207695_10031857 Ga0207695_100318575 318
122 3300025913 Ga0207695_10160686 Ga0207695_101606862 318
123 3300025914 Ga0207671_10016347 Ga0207671_100163478 318
124 3300025949 Ga0207667_10098341 Ga0207667_100983413 318
125 3300046665 Ga0495661_0000778 Ga0495661_0000778_28488_29444 318
126 3300003320 rootH2_10180833 rootH2_101808333 319
127 3300003323 rootH1_10254452 rootH1_102544522 319
128 3300005843 Ga0068860_100111884 Ga0068860_1001118843 319
129 3300005844 Ga0068862_100037133 Ga0068862_1000371336 319
130 3300026095 Ga0207676_10420679 Ga0207676_104206791 319
131 3300028380 Ga0268265_10063350 Ga0268265_100633502 319
132 3300028381 Ga0268264_10300391 Ga0268264_103003911 319
133 3300046524 Ga0495648_0036946 Ga0495648_0036946_979_1971 319
134 3300046660 Ga0495625_0140171 Ga0495625_0140171_72_1031 319
135 3300053157 Ga0500624_000247 Ga0500624_000247_2614_3573 319
136 3300053161 Ga0500634_0094684 Ga0500634_0094684_194_1153 319
137 3300001990 JGI24737J22298_10000796 JGI24737J22298_100007965 320
138 3300002067 JGI24735J21928_10000008 JGI24735J21928_10000008150 320
139 3300003320 rootH2_10060254 rootH2_1006025410 320
140 3300003322 rootL2_10104135 rootL2_101041358 320
141 3300005563 Ga0068855_100016939 Ga0068855_1000169398 320
142 3300005577 Ga0068857_100295385 Ga0068857_1002953851 320
143 3300013102 Ga0157371_10062130 Ga0157371_100621302 320
144 3300013307 Ga0157372_10002043 Ga0157372_1000204315 320
145 3300025949 Ga0207667_10017043 Ga0207667_100170438 320
146 3300026116 Ga0207674_10040221 Ga0207674_100402213 320
147 3300046471 Ga0495650_0000119 Ga0495650_0000119_152281_153243 320
148 3300046492 Ga0495585_0000173 Ga0495585_0000173_49265_50227 320
149 3300046506 Ga0495583_0010045 Ga0495583_0010045_4422_5384 320
150 3300046507 Ga0495606_0000008 Ga0495606_0000008_90666_91628 320
151 3300046512 Ga0495610_0002038 Ga0495610_0002038_10918_11880 320
152 3300046520 Ga0495637_0013908 Ga0495637_0013908_1717_2679 320
153 3300046558 Ga0495633_0022405 Ga0495633_0022405_520_1482 320
154 3300046616 Ga0495668_0106710 Ga0495668_0106710_157_1119 320
155 3300046660 Ga0495625_0000017 Ga0495625_0000017_246928_247890 320
156 3300046665 Ga0495661_0008137 Ga0495661_0008137_2302_3264 320
157 3300046665 Ga0495661_0129931 Ga0495661_0129931_89_1051 320
158 3300046694 Ga0495649_0000121 Ga0495649_0000121_15653_16615 320
159 3300047472 Ga0495686_0018957 Ga0495686_0018957_779_1741 320
160 3300050493 nmdc:mga0k408_31093_c1 nmdc:mga0k408_31093_c1_350_1312 320

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02112

PDEase_II

cAMP phosphodiesterases class-II

40

325

0.83

PF12706

Lactamase_B_2

Beta-lactamase superfamily domain

69

256

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ojv-assembly1.cif.gz_A crystal structure of unliganded yeast pde1 0.8259 27 320
6kns-assembly3.cif.gz_C-2 crystal structure of the metallo-beta-lactamase fold protein yhfi from bacillus subtilis (space group i4122) 0.7693 28 320
6kns-assembly3.cif.gz_C-2 crystal structure of the metallo-beta-lactamase fold protein yhfi from bacillus subtilis (space group i4122) 0.7636 28 320
4ojv-assembly1.cif.gz_A crystal structure of unliganded yeast pde1 0.761 27 320
6kns-assembly4.cif.gz_D-2 crystal structure of the metallo-beta-lactamase fold protein yhfi from bacillus subtilis (space group i4122) 0.7503 30 318
ID Description Score Start End Superfamily
af_Q4DTW2_23_113_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8553 158 206 3.60.15.10
af_P36599_31_323_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8469 36 299 3.60.15.10
af_Q54HY0_51_413_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8167 26 308 3.60.15.10
af_Q5AGE4_9_402_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8103 36 302 3.60.15.10
af_P22434_89_366_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.7915 71 316 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A816F4K3-F1-model_v4 Uncharacterized protein 0.9567 202 320 GO:0004115
GO:0006198
GO:0047555
GO:1902660
AF-A0A839SD42-F1-model_v4 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) 0.9349 33 320 GO:0004115
GO:0006198
GO:0047555
GO:1902660
AF-A0A359DXG0-F1-model_v4 deleted 0.9339 66 316
AF-A0A839SD42-F1-model_v4 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) 0.9318 33 320 GO:0004115
GO:0006198
GO:0047555
GO:1902660
AF-H7FNT8-F1-model_v4 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) 0.93 22 320 GO:0004115
GO:0004118
GO:0004119
GO:0006198
GO:0047555
GO:1902660

Feature Viewer

pLDDT pTM Quality
84.21 0.84 High
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Predicted Structure (AlphaFold2)

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