F234928

General Info

Members Datasets Scaffolds Average Seq Length
160 131 320 303

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10002282|Ga0307513_1000228212
Length 354
Sequence VESFFREIKHDARAFPLCHFPFTLTRMDGALIIDKPVGWTSHDVVARVRRVLRERRVGHTGTLDPFATGVLVVLVGRATRLAQFLSGAEKEYDALVRFGYATETGDLTGARREPQTEDVTGDTSNARRPCAEWSREEVERALASLRGEIEQVPPMYSAKKVQGQKLYELARRGVEIERAAVRVLIRELEVLETDGGAWLRANEDETCDLRVRVACSAGTYVRVLAEDLGARLGAGAHLAALRRTRAGAFRIAKAVTLETLAERVEASGLSELLITPDAALPELPFVHLTAEDARRVRHGAAVRIVDDSGSPWREGERVRMRDAAGNLIAVGVNDASRGQLQPRVMLDAGDENNR

Samples

Sample ID Description Type Environment
1 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
47 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
48 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
66 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
67 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
68 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
69 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
70 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
71 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
72 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
73 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
74 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
75 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
76 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
77 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
78 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
83 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
84 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
85 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
86 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
89 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
92 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
93 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
94 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
95 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
96 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
97 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
98 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
99 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
100 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
101 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
102 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
103 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
104 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
114 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
115 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
116 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
117 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
118 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
119 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
120 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
121 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
122 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
123 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
125 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
128 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
129 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
130 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
131 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.5
Nodule 0
Rhizoplane 0.62
Rhizosphere 90.62
Stem 0
Stem Tuber 0
Unclassified 13.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307513_10002282 3300031456 Bacteria 26768
2 Ga0065712_10098173 3300005290 Bacteria 2127
3 Ga0065715_10091051 3300005293 Bacteria 6169
4 Ga0070658_10013227 3300005327 Bacteria 6620
5 Ga0070690_100120768 3300005330 Bacteria 1758
6 Ga0070666_10024648 3300005335 Bacteria 3920
7 Ga0070680_100109183 3300005336 Bacteria 2302
8 Ga0070674_100528589 3300005356 Unclassified 986
9 Ga0070673_100220406 3300005364 Bacteria 1642
10 Ga0070705_100233362 3300005440 Unclassified 1281
11 Ga0070681_10006747 3300005458 Bacteria 11174
12 Ga0070706_100103926 3300005467 Bacteria 2641
13 Ga0070706_100290622 3300005467 Bacteria 1525
14 Ga0070707_100138535 3300005468 Unclassified 2368
15 Ga0070698_100033930 3300005471 Bacteria 5286
16 Ga0070698_100133054 3300005471 Bacteria 2441
17 Ga0070699_100107882 3300005518 Bacteria 2443
18 Ga0070679_100025830 3300005530 Bacteria 5764
19 Ga0070697_100014311 3300005536 Bacteria 6234
20 Ga0068853_100335345 3300005539 Unclassified 1404
21 Ga0068852_100350903 3300005616 Unclassified 1440
22 Ga0068864_100090250 3300005618 Bacteria 2701
23 Ga0068863_100012657 3300005841 Bacteria 8136
24 Ga0068858_100168511 3300005842 Bacteria 2064
25 Ga0081539_10067552 3300005985 Unclassified 1933
26 Ga0070717_10560269 3300006028 Bacteria 1035
27 Ga0070715_10000020 3300006163 Bacteria 119605
28 Ga0075366_10075462 3300006195 Bacteria 2011
29 Ga0068871_100186560 3300006358 Bacteria 1785
30 Ga0075428_100006577 3300006844 Bacteria 12926
31 Ga0075430_100036063 3300006846 Bacteria 4193
32 Ga0075434_100026058 3300006871 Bacteria 5725
33 Ga0075429_100211648 3300006880 Unclassified 1698
34 Ga0068865_100069805 3300006881 Bacteria 2488
35 Ga0075436_100294050 3300006914 Bacteria 1163
36 Ga0114129_10202468 3300009147 Bacteria 2688
37 Ga0114129_10284457 3300009147 Bacteria 2209
38 Ga0105242_10006792 3300009176 Bacteria 8824
39 Ga0105248_10431792 3300009177 Unclassified 1484
40 Ga0157370_10102930 3300013104 Bacteria 2673
41 Ga0157378_10043011 3300013297 Bacteria 4011
42 Ga0157378_10090125 3300013297 Bacteria 2787
43 Ga0163162_10032925 3300013306 Bacteria 5148
44 Ga0157372_10217199 3300013307 Unclassified 2216
45 Ga0157375_10102839 3300013308 Bacteria 2943
46 Ga0163163_10013223 3300014325 Bacteria 7546
47 Ga0157379_10034475 3300014968 Bacteria 4513
48 Ga0157376_10127643 3300014969 Bacteria 2264
49 Ga0157376_10151301 3300014969 Bacteria 2093
50 Ga0163161_10014265 3300017792 Bacteria 5533
51 Ga0213873_10006732 3300021358 Bacteria 2273
52 Ga0213876_10000783 3300021384 Bacteria 21636
53 Ga0213876_10055546 3300021384 Bacteria 2090
54 Ga0213876_10075404 3300021384 Bacteria 1781
55 Ga0207710_10018709 3300025900 Unclassified 2948
56 Ga0207685_10000008 3300025905 Bacteria 273136
57 Ga0207699_10074111 3300025906 Bacteria 2090
58 Ga0207705_10014216 3300025909 Bacteria 5734
59 Ga0207660_10033270 3300025917 Bacteria 3565
60 Ga0207652_10016755 3300025921 Bacteria 5988
61 Ga0207646_10142758 3300025922 Unclassified 2157
62 Ga0207700_10230335 3300025928 Bacteria 1575
63 Ga0207669_10445217 3300025937 Bacteria 1025
64 Ga0207704_10057885 3300025938 Bacteria 2384
65 Ga0207711_10484812 3300025941 Bacteria 1152
66 Ga0207679_10399828 3300025945 Unclassified 1208
67 Ga0207703_10092924 3300026035 Bacteria 2540
68 Ga0207641_10077029 3300026088 Unclassified 2884
69 Ga0207676_10140078 3300026095 Bacteria 2069
70 Ga0207683_10156280 3300026121 Bacteria 2060
71 Ga0268264_10182799 3300028381 Unclassified 1905
72 Ga0265326_10007790 3300028558 Bacteria 3263
73 Ga0265319_1028537 3300028563 Bacteria 1966
74 Ga0265334_10009842 3300028573 Bacteria 4040
75 Ga0265338_10003311 3300028800 Bacteria 22817
76 Ga0265324_10004355 3300029957 Bacteria 6437
77 Ga0265320_10002585 3300031240 Bacteria 12570
78 Ga0265339_10072180 3300031249 Bacteria 1837
79 Ga0265316_10006980 3300031344 Bacteria 10705
80 Ga0265316_10294741 3300031344 Bacteria 1183
81 Ga0265314_10093740 3300031711 Bacteria 1949
82 Ga0265342_10002252 3300031712 Bacteria 16856
83 Ga0316576_10004735 3300031727 Bacteria 8216
84 Ga0316578_10132127 3300031728 Bacteria 1502
85 Ga0307413_10171984 3300031824 Bacteria 1534
86 Ga0307410_10000520 3300031852 Bacteria 15642
87 Ga0307409_100000756 3300031995 Bacteria 14592
88 Ga0307409_100014858 3300031995 Bacteria 5084
89 Ga0307409_100029430 3300031995 Bacteria 3931
90 Ga0307416_100365504 3300032002 Unclassified 1467
91 Ga0307411_10029025 3300032005 Bacteria 3372
92 Ga0307411_10183392 3300032005 Unclassified 1591
93 Ga0307510_10183450 3300033180 Bacteria 1652
94 Ga0373955_0265116 3300035172 Bacteria 1032
95 Ga0316574_0005039 3300035398 Bacteria 7013
96 Ga0373927_0405572 3300035695 Unclassified 899
97 Ga0316582_0078195 3300036647 Bacteria 2155
98 Ga0395900_0225457 3300037418 Unclassified 1887
99 Ga0400490_44173 3300038726 Bacteria 19262
100 Ga0400491_10852 3300038727 Bacteria 3066
101 Ga0436365_0375822 3300039437 Bacteria 32270
102 Ga0436365_1598034 3300039437 Bacteria 2628
103 Ga0436365_1782857 3300039437 Bacteria 2598
104 Ga0436362_0697763 3300039453 Bacteria 3170
105 Ga0453683_0000158 3300044673 Bacteria 99767
106 Ga0453683_0021881 3300044673 Bacteria 4078
107 Ga0466966_0024533 3300044684 Bacteria 3943
108 Ga0466963_0100101 3300044694 Bacteria 1983
109 Ga0466957_0097724 3300044842 Bacteria 1847
110 Ga0466960_0048902 3300044901 Bacteria 2033
111 Ga0466958_0011712 3300045836 Bacteria 4948
112 Ga0466967_0031597 3300045976 Bacteria 4459
113 Ga0495580_0005677 3300046472 Bacteria 10262
114 Ga0495580_0009952 3300046472 Bacteria 7440
115 Ga0495582_0055591 3300046473 Bacteria 2182
116 Ga0495632_0106172 3300046519 Bacteria 1321
117 Ga0495581_0251388 3300047315 Unclassified 1034
118 Ga0496115_0000570 3300048918 Bacteria 28517
119 Ga0501031_0177627 3300049568 Bacteria 1391
120 Ga0501036_0049939 3300049572 Bacteria 3543
121 Ga0501038_0012616 3300049574 Bacteria 7723
122 Ga0501038_0095174 3300049574 Bacteria 2488
123 Ga0501039_0001832 3300049575 Bacteria 15714
124 Ga0501040_0014352 3300049576 Bacteria 5218
125 Ga0501040_0087155 3300049576 Bacteria 2167
126 Ga0501040_0446349 3300049576 Unclassified 931
127 Ga0501041_0003412 3300049577 Bacteria 9142
128 Ga0501041_0009090 3300049577 Bacteria 5846
129 Ga0501042_0020177 3300049578 Bacteria 4636
130 Ga0501042_0035815 3300049578 Bacteria 3521
131 Ga0501046_0014483 3300049580 Bacteria 6653
132 Ga0501046_0028451 3300049580 Bacteria 4551
133 Ga0501048_0001334 3300049582 Bacteria 18712
134 Ga0501067_0018036 3300049583 Bacteria 3908
135 Ga0501071_0007497 3300049587 Bacteria 7171
136 Ga0501071_0019707 3300049587 Bacteria 4682
137 Ga0501072_0000744 3300049588 Bacteria 23769
138 Ga0501074_0139050 3300049590 Bacteria 1737
139 Ga0501075_0007731 3300049591 Bacteria 7462
140 Ga0501076_0008536 3300049592 Bacteria 7511
141 Ga0501076_0043196 3300049592 Bacteria 3550
142 Ga0501077_0092216 3300049593 Bacteria 1920
143 Ga0501079_0002178 3300049741 Bacteria 14132
144 Ga0501079_0090124 3300049741 Bacteria 2375
145 Ga0501080_0005054 3300049742 Bacteria 11750
146 Ga0501081_0007543 3300049743 Bacteria 7053
147 Ga0501081_0081912 3300049743 Bacteria 2260
148 Ga0501035_0090275 3300049822 Bacteria 2697
149 Ga0501045_0067912 3300049824 Bacteria 2618
150 nmdc:mga0k408_68364_c1 3300050493 Bacteria 2072
151 nmdc:mga0n895_39597_c1 3300050512 Bacteria 4574
152 Ga0500577_0000660 3300053142 Bacteria 8840
153 Ga0500645_008285 3300053730 Bacteria 3558
154 Ga0501084_0023865 3300054114 Bacteria 5101
155 Ga0501084_0181364 3300054114 Bacteria 1777
156 Ga0501082_0002104 3300060353 Bacteria 17534
157 Ga0501082_0182214 3300060353 Bacteria 1827
158 Ga0501082_0343943 3300060353 Unclassified 1300
159 Ga0530510_0000701 3300061734 Bacteria 21725
160 Ga0530510_0041769 3300061734 Bacteria 3311
161 Ga0307513_10002282
162 Ga0065712_10098173
163 Ga0065715_10091051
164 Ga0070658_10013227
165 Ga0070690_100120768
166 Ga0070666_10024648
167 Ga0070680_100109183
168 Ga0070674_100528589
169 Ga0070673_100220406
170 Ga0070705_100233362
171 Ga0070681_10006747
172 Ga0070706_100103926
173 Ga0070706_100290622
174 Ga0070707_100138535
175 Ga0070698_100033930
176 Ga0070698_100133054
177 Ga0070699_100107882
178 Ga0070679_100025830
179 Ga0070697_100014311
180 Ga0068853_100335345
181 Ga0068852_100350903
182 Ga0068864_100090250
183 Ga0068863_100012657
184 Ga0068858_100168511
185 Ga0081539_10067552
186 Ga0070717_10560269
187 Ga0070715_10000020
188 Ga0075366_10075462
189 Ga0068871_100186560
190 Ga0075428_100006577
191 Ga0075430_100036063
192 Ga0075434_100026058
193 Ga0075429_100211648
194 Ga0068865_100069805
195 Ga0075436_100294050
196 Ga0114129_10202468
197 Ga0114129_10284457
198 Ga0105242_10006792
199 Ga0105248_10431792
200 Ga0157370_10102930
201 Ga0157378_10043011
202 Ga0157378_10090125
203 Ga0163162_10032925
204 Ga0157372_10217199
205 Ga0157375_10102839
206 Ga0163163_10013223
207 Ga0157379_10034475
208 Ga0157376_10127643
209 Ga0157376_10151301
210 Ga0163161_10014265
211 Ga0213873_10006732
212 Ga0213876_10000783
213 Ga0213876_10055546
214 Ga0213876_10075404
215 Ga0207710_10018709
216 Ga0207685_10000008
217 Ga0207699_10074111
218 Ga0207705_10014216
219 Ga0207660_10033270
220 Ga0207652_10016755
221 Ga0207646_10142758
222 Ga0207700_10230335
223 Ga0207669_10445217
224 Ga0207704_10057885
225 Ga0207711_10484812
226 Ga0207679_10399828
227 Ga0207703_10092924
228 Ga0207641_10077029
229 Ga0207676_10140078
230 Ga0207683_10156280
231 Ga0268264_10182799
232 Ga0265326_10007790
233 Ga0265319_1028537
234 Ga0265334_10009842
235 Ga0265338_10003311
236 Ga0265324_10004355
237 Ga0265320_10002585
238 Ga0265339_10072180
239 Ga0265316_10006980
240 Ga0265316_10294741
241 Ga0265314_10093740
242 Ga0265342_10002252
243 Ga0316576_10004735
244 Ga0316578_10132127
245 Ga0307413_10171984
246 Ga0307410_10000520
247 Ga0307409_100000756
248 Ga0307409_100014858
249 Ga0307409_100029430
250 Ga0307416_100365504
251 Ga0307411_10029025
252 Ga0307411_10183392
253 Ga0307510_10183450
254 Ga0373955_0265116
255 Ga0316574_0005039
256 Ga0373927_0405572
257 Ga0316582_0078195
258 Ga0395900_0225457
259 Ga0400490_44173
260 Ga0400491_10852
261 Ga0436365_0375822
262 Ga0436365_1598034
263 Ga0436365_1782857
264 Ga0436362_0697763
265 Ga0453683_0000158
266 Ga0453683_0021881
267 Ga0466966_0024533
268 Ga0466963_0100101
269 Ga0466957_0097724
270 Ga0466960_0048902
271 Ga0466958_0011712
272 Ga0466967_0031597
273 Ga0495580_0005677
274 Ga0495580_0009952
275 Ga0495582_0055591
276 Ga0495632_0106172
277 Ga0495581_0251388
278 Ga0496115_0000570
279 Ga0501031_0177627
280 Ga0501036_0049939
281 Ga0501038_0012616
282 Ga0501038_0095174
283 Ga0501039_0001832
284 Ga0501040_0014352
285 Ga0501040_0087155
286 Ga0501040_0446349
287 Ga0501041_0003412
288 Ga0501041_0009090
289 Ga0501042_0020177
290 Ga0501042_0035815
291 Ga0501046_0014483
292 Ga0501046_0028451
293 Ga0501048_0001334
294 Ga0501067_0018036
295 Ga0501071_0007497
296 Ga0501071_0019707
297 Ga0501072_0000744
298 Ga0501074_0139050
299 Ga0501075_0007731
300 Ga0501076_0008536
301 Ga0501076_0043196
302 Ga0501077_0092216
303 Ga0501079_0002178
304 Ga0501079_0090124
305 Ga0501080_0005054
306 Ga0501081_0007543
307 Ga0501081_0081912
308 Ga0501035_0090275
309 Ga0501045_0067912
310 nmdc:mga0k408_68364_c1
311 nmdc:mga0n895_39597_c1
312 Ga0500577_0000660
313 Ga0500645_008285
314 Ga0501084_0023865
315 Ga0501084_0181364
316 Ga0501082_0002104
317 Ga0501082_0182214
318 Ga0501082_0343943
319 Ga0530510_0000701
320 Ga0530510_0041769

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01509

TruB_N

TruB family pseudouridylate synthase (N terminal domain)

49

221

0.89

PF16198

TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

222

280

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.9145 1 292
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.9115 1 292
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9113 1 292
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9084 1 292
2gks-assembly1.cif.gz_B crystal structure of the bi-functional atp sulfurylase-aps kinase from aquifex aeolicus, a chemolithotrophic thermophile 0.8981 256 280
ID Description Score Start End Superfamily
af_B9F4Z0_25_81_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9796 2 50 3.30.2350.10
af_Q57612_45_223_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9569 3 215 3.30.2350.10
af_Q0WVR7_318_539_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9534 2 219 3.30.2350.10
af_Q2G2Q3_1_236_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9494 1 225 3.30.2350.10
af_P9WHP7_7_227_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9437 3 219 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A536TVW9-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9795 24 212 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-A0A7C1BRD5-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9783 1 217 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-A0A2V5Y7U1-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9762 1 211 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-A0A3D2NUF1-F1-model_v4 deleted 0.9751 1 153
AF-A0A7Y2VLQ4-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9749 1 167 GO:0003723
GO:0006400
GO:0160148
GO:1990481

Map