F234137

General Info

Members Datasets Scaffolds Average Seq Length
160 90 160 203

Family's Representative Sequence

Representative Sequence 3300005577|Ga0068857_100008570|Ga0068857_1000085705
Length 222
Sequence VGEERAICIPSSIKFYTMFNRPKNLETAFRQLRQYCIIWMLVCSGLTFYALAKTFSLLSVMDKKIYILSSGKVLEAVAGDRKENLPVEARDHIRAFHQYFFTLDPDEKVINANITHALYLADASAKRLYDNLKENGYYAGVISGNISQQLVIDSIVVDINSYPYYFRCWAIQKIIRPTSLTTRSLLTEGWLRNCSRSDNNPHGFLIERWSTLENKDIGVESR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
59 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
62 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
63 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
64 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
65 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
66 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
67 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
72 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
75 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
76 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
77 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
78 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
79 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
80 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
81 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
82 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
83 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
84 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
85 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
88 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
89 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
90 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.5
Nodule 1.25
Rhizoplane 0.62
Rhizosphere 84.38
Stem 0
Stem Tuber 0
Unclassified 11.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2732696 2162886007 Bacteria 84561
2 rootH1_10026643 3300003316 Unclassified 2195
3 rootH2_10206965 3300003320 Unclassified 1590
4 rootL2_10055395 3300003322 Viruses 2614
5 rootL2_10149537 3300003322 Bacteria 3085
6 rootL2_10353331 3300003322 Bacteria 1618
7 rootH1_10104895 3300003323 Unclassified 2916
8 rootH1_10225460 3300003323 Unclassified 1236
9 Ga0070658_10042272 3300005327 Bacteria 3680
10 Ga0070682_100241694 3300005337 Bacteria 1296
11 Ga0068868_100093922 3300005338 Bacteria 2419
12 Ga0070673_100506658 3300005364 Bacteria 1092
13 Ga0070659_100203732 3300005366 Bacteria 1629
14 Ga0070662_100002894 3300005457 Bacteria 10656
15 Ga0070684_100226063 3300005535 Bacteria 1708
16 Ga0070665_100000680 3300005548 Bacteria 45565
17 Ga0068855_100007681 3300005563 Bacteria 13028
18 Ga0068855_100209944 3300005563 Unclassified 2188
19 Ga0068857_100008570 3300005577 Bacteria 8844
20 Ga0068854_100026626 3300005578 Bacteria 3976
21 Ga0068854_100826471 3300005578 Unclassified 809
22 Ga0068856_100053902 3300005614 Bacteria 3966
23 Ga0068852_100013866 3300005616 Bacteria 6181
24 Ga0068859_100017129 3300005617 Bacteria 7277
25 Ga0068860_100000034 3300005843 Bacteria 243128
26 Ga0068860_100000094 3300005843 Bacteria 149488
27 Ga0097620_100017129 3300006931 Bacteria 7277
28 Ga0079104_1000023 3300006946 Bacteria 219954
29 Ga0105250_10031243 3300009092 Bacteria 2138
30 Ga0105240_10000153 3300009093 Bacteria 140973
31 Ga0105240_10005784 3300009093 Bacteria 18340
32 Ga0105240_10031255 3300009093 Bacteria 6907
33 Ga0105240_10034420 3300009093 Bacteria 6534
34 Ga0105240_10100366 3300009093 Bacteria 3522
35 Ga0105240_10114807 3300009093 Unclassified 3253
36 Ga0105240_10772035 3300009093 Bacteria 1043
37 Ga0105241_10027691 3300009174 Bacteria 4220
38 Ga0105241_10156917 3300009174 Unclassified 1867
39 Ga0105241_10184633 3300009174 Bacteria 1732
40 Ga0105241_10286811 3300009174 Unclassified 1408
41 Ga0105241_10480200 3300009174 Bacteria 1105
42 Ga0105237_10001541 3300009545 Bacteria 30097
43 Ga0105237_10006676 3300009545 Bacteria 12753
44 Ga0105237_10010370 3300009545 Bacteria 9919
45 Ga0105237_10014012 3300009545 Bacteria 8390
46 Ga0105237_10023674 3300009545 Bacteria 6289
47 Ga0105237_10051740 3300009545 Bacteria 4125
48 Ga0105237_10571097 3300009545 Unclassified 1138
49 Ga0105238_10014558 3300009551 Bacteria 7953
50 Ga0105238_10058614 3300009551 Unclassified 3859
51 Ga0105238_10426937 3300009551 Bacteria 1321
52 Ga0105239_10001414 3300010375 Bacteria 32002
53 Ga0105239_10003208 3300010375 Bacteria 20221
54 Ga0105239_10027468 3300010375 Bacteria 6265
55 Ga0105239_10030292 3300010375 Bacteria 5948
56 Ga0105239_10077251 3300010375 Bacteria 3664
57 Ga0105239_10133212 3300010375 Unclassified 2765
58 Ga0105239_10210500 3300010375 Bacteria 2179
59 Ga0105239_10331434 3300010375 Bacteria 1717
60 Ga0105239_10513132 3300010375 Unclassified 1363
61 Ga0157373_10032905 3300013100 Unclassified 3732
62 Ga0157373_10442415 3300013100 Unclassified 935
63 Ga0157371_10000433 3300013102 Bacteria 51401
64 Ga0157371_10663834 3300013102 Bacteria 779
65 Ga0157370_10000153 3300013104 Bacteria 84822
66 Ga0157370_10003928 3300013104 Bacteria 17301
67 Ga0157370_10014556 3300013104 Bacteria 8040
68 Ga0157370_10590288 3300013104 Unclassified 1017
69 Ga0157370_10745922 3300013104 Unclassified 892
70 Ga0157369_10020945 3300013105 Bacteria 7310
71 Ga0157369_10053816 3300013105 Plasmid 4348
72 Ga0157369_10276423 3300013105 Bacteria 1749
73 Ga0157369_10741706 3300013105 Unclassified 1011
74 Ga0157378_10247064 3300013297 Unclassified 1707
75 Ga0157378_11596347 3300013297 Bacteria 698
76 Ga0163162_10002667 3300013306 Bacteria 16925
77 Ga0157372_10013409 3300013307 Bacteria 8752
78 Ga0157372_10057607 3300013307 Unclassified 4343
79 Ga0157372_10071419 3300013307 Unclassified 3909
80 Ga0157372_11092181 3300013307 Bacteria 923
81 Ga0163163_10370994 3300014325 Bacteria 1488
82 Ga0182006_1000100 3300015261 Bacteria 97114
83 Ga0163161_10003794 3300017792 Bacteria 10597
84 Ga0207647_10007559 3300025904 Bacteria 7840
85 Ga0207647_10029954 3300025904 Unclassified 3516
86 Ga0207705_10013435 3300025909 Bacteria 5906
87 Ga0207654_10114949 3300025911 Bacteria 1680
88 Ga0207695_10000236 3300025913 Bacteria 146419
89 Ga0207695_10000976 3300025913 Bacteria 50845
90 Ga0207695_10003488 3300025913 Bacteria 22113
91 Ga0207695_10007944 3300025913 Bacteria 13387
92 Ga0207695_10028355 3300025913 Bacteria 6212
93 Ga0207695_10328327 3300025913 Bacteria 1418
94 Ga0207671_10000980 3300025914 Bacteria 35293
95 Ga0207671_10002054 3300025914 Bacteria 22079
96 Ga0207671_10004810 3300025914 Bacteria 12722
97 Ga0207671_10005114 3300025914 Bacteria 12224
98 Ga0207671_10007021 3300025914 Bacteria 9867
99 Ga0207652_10663406 3300025921 Bacteria 932
100 Ga0207694_10076538 3300025924 Bacteria 2621
101 Ga0207690_10370522 3300025932 Unclassified 1136
102 Ga0207667_10006189 3300025949 Bacteria 14527
103 Ga0207667_10025418 3300025949 Bacteria 6480
104 Ga0207667_10063588 3300025949 Bacteria 3856
105 Ga0207667_10191354 3300025949 Bacteria 2099
106 Ga0207667_10233726 3300025949 Bacteria 1882
107 Ga0207640_10206325 3300025981 Bacteria 1493
108 Ga0207677_10541695 3300026023 Unclassified 1013
109 Ga0207639_10500758 3300026041 Bacteria 1110
110 Ga0207678_10111188 3300026067 Bacteria 2337
111 Ga0207702_10045376 3300026078 Bacteria 3697
112 Ga0207674_10012189 3300026116 Bacteria 9617
113 Ga0207698_10007434 3300026142 Bacteria 6862
114 Ga0207698_10348640 3300026142 Unclassified 1397
115 Ga0209281_1000037 3300027111 Bacteria 368555
116 Ga0268266_10000071 3300028379 Bacteria 232887
117 Ga0268264_10000052 3300028381 Bacteria 321218
118 Ga0268264_10000197 3300028381 Bacteria 123614
119 Ga0307517_10022497 3300028786 Bacteria 7894
120 Ga0307511_10000882 3300030521 Bacteria 31732
121 Ga0307408_100230077 3300031548 Unclassified 1518
122 Ga0307516_10025969 3300031730 Bacteria 5955
123 Ga0307405_10002946 3300031731 Bacteria 7684
124 Ga0307412_10037438 3300031911 Bacteria 3117
125 Ga0307414_10175647 3300032004 Unclassified 1717
126 Ga0307510_10000019 3300033180 Bacteria 186383
127 Ga0307510_10093627 3300033180 Bacteria 2835
128 Ga0373941_0000645 3300035115 Bacteria 7060
129 Ga0373935_0317321 3300035692 Bacteria 1105
130 Ga0395899_0000027 3300037312 Bacteria 337387
131 Ga0395899_0019259 3300037312 Bacteria 5187
132 Ga0395898_0072643 3300037466 Plasmid 3324
133 Ga0395905_0168250 3300037471 Unclassified 2059
134 Ga0395905_0266664 3300037471 Bacteria 1598
135 Ga0451807_0829629 3300041486 Bacteria 692
136 Ga0466959_0016152 3300045049 Bacteria 5449
137 Ga0495638_0031557 3300046460 Unclassified 3404
138 Ga0495606_0009014 3300046507 Bacteria 8527
139 Ga0495606_0194455 3300046507 Bacteria 1160
140 Ga0495648_0012890 3300046524 Bacteria 6209
141 Ga0495609_0132676 3300046538 Bacteria 1066
142 Ga0495668_0000113 3300046616 Bacteria 128428
143 Ga0495649_0054558 3300046694 Unclassified 2161
144 Ga0495660_0008939 3300046810 Bacteria 5852
145 Ga0495660_0054345 3300046810 Bacteria 2170
146 Ga0495687_010418 3300047443 Bacteria 5099
147 Ga0495687_034552 3300047443 Bacteria 2283
148 Ga0495686_0000040 3300047472 Bacteria 301210
149 Ga0495686_0000041 3300047472 Bacteria 297599
150 Ga0495686_0000221 3300047472 Bacteria 104637
151 Ga0496122_0005678 3300048925 Bacteria 14728
152 Ga0496123_0022750 3300048926 Bacteria 4820
153 Ga0496124_0284031 3300048927 Bacteria 1205
154 Ga0496125_0000026 3300048928 Bacteria 397380
155 Ga0496125_0068179 3300048928 Bacteria 2800
156 Ga0496126_0518877 3300048929 Unclassified 950
157 Ga0500651_0016525 3300053093 Viruses 4541
158 Ga0500608_065343 3300053122 Bacteria 1735
159 Ga0500568_0045888 3300053139 Unclassified 1737
160 Ga0500590_216308 3300053148 Bacteria 795

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046538 Ga0495609_0132676 Ga0495609_0132676_49_600 183
2 3300005337 Ga0070682_100241694 Ga0070682_1002416941 186
3 3300013104 Ga0157370_10014556 Ga0157370_100145566 186
4 3300041486 Ga0451807_0829629 Ga0451807_0829629_117_677 186
5 3300005843 Ga0068860_100000034 Ga0068860_100000034130 190
6 3300028381 Ga0268264_10000052 Ga0268264_10000052177 190
7 3300005563 Ga0068855_100209944 Ga0068855_1002099441 191
8 3300005578 Ga0068854_100026626 Ga0068854_1000266264 191
9 3300005616 Ga0068852_100013866 Ga0068852_1000138662 191
10 3300025904 Ga0207647_10029954 Ga0207647_100299542 191
11 3300025924 Ga0207694_10076538 Ga0207694_100765382 191
12 3300010375 Ga0105239_10027468 Ga0105239_100274686 192
13 3300037312 Ga0395899_0019259 Ga0395899_0019259_4274_4891 192
14 3300037466 Ga0395898_0072643 Ga0395898_0072643_816_1433 192
15 3300037471 Ga0395905_0168250 Ga0395905_0168250_479_1096 192
16 3300031730 Ga0307516_10025969 Ga0307516_100259695 193
17 3300005338 Ga0068868_100093922 Ga0068868_1000939222 194
18 3300005364 Ga0070673_100506658 Ga0070673_1005066581 194
19 3300005457 Ga0070662_100002894 Ga0070662_1000028947 194
20 3300009174 Ga0105241_10286811 Ga0105241_102868112 194
21 3300013105 Ga0157369_10053816 Ga0157369_100538163 194
22 3300025904 Ga0207647_10007559 Ga0207647_100075597 194
23 3300025913 Ga0207695_10328327 Ga0207695_103283272 194
24 3300026023 Ga0207677_10541695 Ga0207677_105416952 194
25 3300033180 Ga0307510_10000019 Ga0307510_1000001970 198
26 3300013105 Ga0157369_10276423 Ga0157369_102764232 201
27 3300017792 Ga0163161_10003794 Ga0163161_100037949 201
28 3300025914 Ga0207671_10005114 Ga0207671_1000511411 201
29 3300025949 Ga0207667_10063588 Ga0207667_100635887 201
30 2162886007 SwRhRL2b_contig_2732696 SwRhRL2b_0490.00004620 205
31 3300003316 rootH1_10026643 rootH1_100266432 205
32 3300003320 rootH2_10206965 rootH2_102069652 205
33 3300003322 rootL2_10055395 rootL2_100553952 205
34 3300003322 rootL2_10149537 rootL2_101495372 205
35 3300003322 rootL2_10353331 rootL2_103533312 205
36 3300003323 rootH1_10104895 rootH1_101048952 205
37 3300003323 rootH1_10225460 rootH1_102254602 205
38 3300005327 Ga0070658_10042272 Ga0070658_100422722 205
39 3300005366 Ga0070659_100203732 Ga0070659_1002037322 205
40 3300005535 Ga0070684_100226063 Ga0070684_1002260632 205
41 3300005548 Ga0070665_100000680 Ga0070665_10000068027 205
42 3300005563 Ga0068855_100007681 Ga0068855_1000076815 205
43 3300005577 Ga0068857_100008570 Ga0068857_1000085705 205
44 3300005578 Ga0068854_100826471 Ga0068854_1008264712 205
45 3300005614 Ga0068856_100053902 Ga0068856_1000539024 205
46 3300005617 Ga0068859_100017129 Ga0068859_1000171294 205
47 3300005843 Ga0068860_100000094 Ga0068860_10000009453 205
48 3300006931 Ga0097620_100017129 Ga0097620_1000171294 205
49 3300006946 Ga0079104_1000023 Ga0079104_100002390 205
50 3300009092 Ga0105250_10031243 Ga0105250_100312431 205
51 3300009093 Ga0105240_10000153 Ga0105240_1000015378 205
52 3300009093 Ga0105240_10005784 Ga0105240_100057842 205
53 3300009093 Ga0105240_10031255 Ga0105240_100312554 205
54 3300009093 Ga0105240_10034420 Ga0105240_100344202 205
55 3300009093 Ga0105240_10100366 Ga0105240_101003663 205
56 3300009093 Ga0105240_10114807 Ga0105240_101148075 205
57 3300009093 Ga0105240_10772035 Ga0105240_107720352 205
58 3300009174 Ga0105241_10027691 Ga0105241_100276912 205
59 3300009174 Ga0105241_10156917 Ga0105241_101569172 205
60 3300009174 Ga0105241_10184633 Ga0105241_101846332 205
61 3300009174 Ga0105241_10480200 Ga0105241_104802002 205
62 3300009545 Ga0105237_10001541 Ga0105237_1000154114 205
63 3300009545 Ga0105237_10006676 Ga0105237_100066765 205
64 3300009545 Ga0105237_10010370 Ga0105237_100103702 205
65 3300009545 Ga0105237_10014012 Ga0105237_100140123 205
66 3300009545 Ga0105237_10023674 Ga0105237_100236742 205
67 3300009545 Ga0105237_10051740 Ga0105237_100517402 205
68 3300009545 Ga0105237_10571097 Ga0105237_105710972 205
69 3300009551 Ga0105238_10014558 Ga0105238_100145583 205
70 3300009551 Ga0105238_10058614 Ga0105238_100586146 205
71 3300009551 Ga0105238_10426937 Ga0105238_104269372 205
72 3300010375 Ga0105239_10001414 Ga0105239_1000141417 205
73 3300010375 Ga0105239_10003208 Ga0105239_100032087 205
74 3300010375 Ga0105239_10030292 Ga0105239_100302925 205
75 3300010375 Ga0105239_10077251 Ga0105239_100772514 205
76 3300010375 Ga0105239_10133212 Ga0105239_101332122 205
77 3300010375 Ga0105239_10210500 Ga0105239_102105002 205
78 3300010375 Ga0105239_10331434 Ga0105239_103314342 205
79 3300010375 Ga0105239_10513132 Ga0105239_105131321 205
80 3300013100 Ga0157373_10032905 Ga0157373_100329052 205
81 3300013100 Ga0157373_10442415 Ga0157373_104424151 205
82 3300013102 Ga0157371_10000433 Ga0157371_1000043347 205
83 3300013102 Ga0157371_10663834 Ga0157371_106638341 205
84 3300013104 Ga0157370_10000153 Ga0157370_1000015365 205
85 3300013104 Ga0157370_10003928 Ga0157370_100039284 205
86 3300013104 Ga0157370_10590288 Ga0157370_105902881 205
87 3300013104 Ga0157370_10745922 Ga0157370_107459222 205
88 3300013105 Ga0157369_10020945 Ga0157369_100209456 205
89 3300013105 Ga0157369_10741706 Ga0157369_107417062 205
90 3300013297 Ga0157378_10247064 Ga0157378_102470642 205
91 3300013297 Ga0157378_11596347 Ga0157378_115963471 205
92 3300013306 Ga0163162_10002667 Ga0163162_100026672 205
93 3300013307 Ga0157372_10013409 Ga0157372_100134099 205
94 3300013307 Ga0157372_10057607 Ga0157372_100576075 205
95 3300013307 Ga0157372_10071419 Ga0157372_100714192 205
96 3300013307 Ga0157372_11092181 Ga0157372_110921812 205
97 3300014325 Ga0163163_10370994 Ga0163163_103709941 205
98 3300015261 Ga0182006_1000100 Ga0182006_100010015 205
99 3300025909 Ga0207705_10013435 Ga0207705_100134355 205
100 3300025911 Ga0207654_10114949 Ga0207654_101149492 205
101 3300025913 Ga0207695_10000236 Ga0207695_1000023647 205
102 3300025913 Ga0207695_10000976 Ga0207695_1000097621 205
103 3300025913 Ga0207695_10003488 Ga0207695_100034887 205
104 3300025913 Ga0207695_10007944 Ga0207695_1000794411 205
105 3300025913 Ga0207695_10028355 Ga0207695_100283556 205
106 3300025914 Ga0207671_10000980 Ga0207671_100009803 205
107 3300025914 Ga0207671_10002054 Ga0207671_1000205417 205
108 3300025914 Ga0207671_10004810 Ga0207671_1000481010 205
109 3300025914 Ga0207671_10007021 Ga0207671_100070217 205
110 3300025921 Ga0207652_10663406 Ga0207652_106634062 205
111 3300025932 Ga0207690_10370522 Ga0207690_103705221 205
112 3300025949 Ga0207667_10006189 Ga0207667_100061899 205
113 3300025949 Ga0207667_10025418 Ga0207667_100254182 205
114 3300025949 Ga0207667_10191354 Ga0207667_101913542 205
115 3300025949 Ga0207667_10233726 Ga0207667_102337262 205
116 3300025981 Ga0207640_10206325 Ga0207640_102063252 205
117 3300026041 Ga0207639_10500758 Ga0207639_105007581 205
118 3300026067 Ga0207678_10111188 Ga0207678_101111883 205
119 3300026078 Ga0207702_10045376 Ga0207702_100453764 205
120 3300026116 Ga0207674_10012189 Ga0207674_100121899 205
121 3300026142 Ga0207698_10007434 Ga0207698_100074341 205
122 3300026142 Ga0207698_10348640 Ga0207698_103486402 205
123 3300027111 Ga0209281_1000037 Ga0209281_1000037151 205
124 3300028379 Ga0268266_10000071 Ga0268266_10000071168 205
125 3300028381 Ga0268264_10000197 Ga0268264_1000019731 205
126 3300028786 Ga0307517_10022497 Ga0307517_100224977 205
127 3300030521 Ga0307511_10000882 Ga0307511_1000088216 205
128 3300031548 Ga0307408_100230077 Ga0307408_1002300772 205
129 3300031731 Ga0307405_10002946 Ga0307405_100029464 205
130 3300031911 Ga0307412_10037438 Ga0307412_100374384 205
131 3300032004 Ga0307414_10175647 Ga0307414_101756472 205
132 3300033180 Ga0307510_10093627 Ga0307510_100936272 205
133 3300035115 Ga0373941_0000645 Ga0373941_0000645_1995_2618 205
134 3300035692 Ga0373935_0317321 Ga0373935_0317321_306_923 205
135 3300037312 Ga0395899_0000027 Ga0395899_0000027_320677_321294 205
136 3300037471 Ga0395905_0266664 Ga0395905_0266664_547_1164 205
137 3300045049 Ga0466959_0016152 Ga0466959_0016152_2409_3038 205
138 3300046460 Ga0495638_0031557 Ga0495638_0031557_1968_2585 205
139 3300046507 Ga0495606_0009014 Ga0495606_0009014_4561_5178 205
140 3300046507 Ga0495606_0194455 Ga0495606_0194455_146_763 205
141 3300046524 Ga0495648_0012890 Ga0495648_0012890_4745_5368 205
142 3300046616 Ga0495668_0000113 Ga0495668_0000113_4615_5232 205
143 3300046694 Ga0495649_0054558 Ga0495649_0054558_849_1478 205
144 3300046810 Ga0495660_0008939 Ga0495660_0008939_3242_3859 205
145 3300046810 Ga0495660_0054345 Ga0495660_0054345_229_846 205
146 3300047443 Ga0495687_010418 Ga0495687_010418_3321_3944 205
147 3300047443 Ga0495687_034552 Ga0495687_034552_511_1134 205
148 3300047472 Ga0495686_0000040 Ga0495686_0000040_135942_136559 205
149 3300047472 Ga0495686_0000041 Ga0495686_0000041_9044_9661 205
150 3300047472 Ga0495686_0000221 Ga0495686_0000221_58442_59059 205
151 3300048925 Ga0496122_0005678 Ga0496122_0005678_12921_13541 205
152 3300048926 Ga0496123_0022750 Ga0496123_0022750_4178_4798 205
153 3300048927 Ga0496124_0284031 Ga0496124_0284031_31_654 205
154 3300048928 Ga0496125_0000026 Ga0496125_0000026_70927_71550 205
155 3300048928 Ga0496125_0068179 Ga0496125_0068179_2094_2714 205
156 3300048929 Ga0496126_0518877 Ga0496126_0518877_282_899 205
157 3300053093 Ga0500651_0016525 Ga0500651_0016525_588_1205 205
158 3300053122 Ga0500608_065343 Ga0500608_065343_808_1428 205
159 3300053139 Ga0500568_0045888 Ga0500568_0045888_644_1267 205
160 3300053148 Ga0500590_216308 Ga0500590_216308_81_698 205

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bhm-assembly2.cif.gz_D crystal structure of virb8 from brucella suis 0.7909 76 196
3wz4-assembly5.cif.gz_E structure of the periplasmic domain of doti (crystal form i) 0.76 72 194
5wio-assembly2.cif.gz_C trae protein in complex with 4-(1h-pyrrol-1-yl)pyridine-2-carboxylic acid 0.7597 74 196
4kz1-assembly1.cif.gz_A-2 crystal structure of the soluble domain of virb8 from bartonella grahamii 0.7528 70 198
4nhf-assembly1.cif.gz_B crystal structure of the soluble domain of trwg type iv secretion machinery from bartonella grahamii 0.7475 70 201
ID Description Score Start End Superfamily
af_O53973_67_188_3.10.450.50 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.8183 74 193 3.10.450.50
4akzD00 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.8074 69 196 3.10.450.230
af_P71754_77_184_3.10.450.50 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.7986 85 193 3.10.450.50
2cc3B00 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.7957 67 201 3.10.450.230
af_I6YGA5_49_159_3.10.450.230 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.7861 79 193 3.10.450.230
ID Description Score Start End GO Terms
AF-A0A519YMU2-F1-model_v4 Conjugative transposon protein TraK 0.9949 71 205
AF-A0A2R7JQB4-F1-model_v4 Conjugative transposon protein TraK 0.9919 85 205
AF-A0A520II25-F1-model_v4 Conjugative transposon protein TraK 0.9816 69 201
AF-A0A6L3IJB7-F1-model_v4 Conjugative transposon protein TraK 0.9816 62 205
AF-A0A3R7YK20-F1-model_v4 Conjugative transposon protein TraK 0.9813 85 205

Feature Viewer

pLDDT pTM Quality
84.51 0.64 Medium
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Predicted Structure (AlphaFold2)

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