F232528

General Info

Members Datasets Scaffolds Average Seq Length
159 119 155 441

Family's Representative Sequence

Representative Sequence 3300031728|Ga0316578_10025325|Ga0316578_100253251
Length 465
Sequence MQTIAMTAKKPMYDLHLPQTDHPRVVVIGGGFGGINLVRHLDTRRFEVVLLDRYNYHTFQPLLYQVATAGLEPDSIAGPLRKIFRRTNGFHFRMLKVHRVEPDQNRVVTTAGPVPYDYLVIATGSSVNFFQNESIARHAYPVKQLTHALDLRSEIFQQLEKLTILHRSDKDEALYTFVVVGAGPTGVEICGALSELRRKVLPADYKDTGLQSIRIYLVEGLSRVLPQMSEESGRRARKYLEKMGVEVILDTLTDSYDGSTVKLNNGRKIKSKTMIWAAGVKANSISGFAEETYARGKIRVNGINQVLNGASPEQPLKNIFAIGDVAHMESERYPEGLPGLAPVAIQQGKLLARNLSALERGKPARPFKYRDKGVMATIGRNRAVGDLPWGIKLSGFAGWFAWMASHLVFLIGFRNKAVVLINWIWNYITYDRGIRIILRPSPKESDPISREMAREMKESEGINSH

Samples

Sample ID Description Type Environment
1 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
2 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
3 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
4 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
12 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
15 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
21 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
22 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
35 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
36 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
60 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
86 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
87 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
88 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
89 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
92 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
93 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
94 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
97 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
98 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
99 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
100 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
101 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
106 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
111 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
112 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
113 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
114 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
115 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
116 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
117 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
118 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
119 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.48
Metatranscriptomes 0
Isolates 2.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.06
Nodule 0
Rhizoplane 0.63
Rhizosphere 78.62
Stem 0
Stem Tuber 0
Unclassified 10.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25157J39369_1002961 3300002741 Bacteria 3746
2 JGI25406J46586_10003118 3300003203 Bacteria 7793
3 rootH2_10015843 3300003320 Bacteria 8427
4 rootH2_10064832 3300003320 Bacteria 12701
5 rootH2_10070555 3300003320 Unclassified 3336
6 rootL2_10031014 3300003322 Bacteria 5369
7 rootL2_10154631 3300003322 Bacteria 3248
8 rootL2_10217415 3300003322 Bacteria 4063
9 rootL2_10253894 3300003322 Bacteria 5541
10 Ga0055535_1000775 3300003761 Bacteria 23542
11 Ga0055542_1003582 3300003762 Bacteria 4117
12 Ga0055531_10000026 3300003794 Bacteria 160364
13 Ga0070676_10011910 3300005328 Unclassified 4738
14 Ga0070683_100007186 3300005329 Bacteria 9387
15 Ga0070683_100042389 3300005329 Bacteria 4191
16 Ga0068869_100045377 3300005334 Bacteria 3164
17 Ga0070666_10041606 3300005335 Unclassified 3071
18 Ga0068868_100018589 3300005338 Bacteria 5199
19 Ga0068868_100062228 3300005338 Bacteria 2958
20 Ga0070660_100005695 3300005339 Bacteria 8635
21 Ga0070668_100008948 3300005347 Bacteria 7433
22 Ga0070675_100152464 3300005354 Bacteria 1982
23 Ga0070671_100037983 3300005355 Bacteria 3996
24 Ga0070673_100087698 3300005364 Bacteria 2537
25 Ga0070659_100000449 3300005366 Bacteria 30726
26 Ga0070659_100003058 3300005366 Bacteria 11882
27 Ga0070713_100284704 3300005436 Bacteria 1517
28 Ga0070681_10100663 3300005458 Bacteria 2836
29 Ga0068867_100017537 3300005459 Bacteria 5084
30 Ga0070684_100085140 3300005535 Bacteria 2803
31 Ga0068853_100046389 3300005539 Bacteria 3725
32 Ga0070686_100013035 3300005544 Bacteria 4746
33 Ga0070665_100014332 3300005548 Bacteria 7961
34 Ga0068855_100000019 3300005563 Bacteria 205963
35 Ga0068855_100026670 3300005563 Bacteria 6913
36 Ga0068855_100049327 3300005563 Bacteria 4965
37 Ga0070664_100009814 3300005564 Bacteria 7757
38 Ga0068857_100000913 3300005577 Bacteria 22316
39 Ga0068854_100006953 3300005578 Bacteria 7219
40 Ga0068854_100020759 3300005578 Bacteria 4451
41 Ga0068854_100111465 3300005578 Bacteria 2064
42 Ga0068856_100007294 3300005614 Bacteria 10788
43 Ga0068856_100057618 3300005614 Bacteria 3836
44 Ga0068852_100000505 3300005616 Bacteria 25668
45 Ga0068852_100002166 3300005616 Bacteria 13481
46 Ga0068852_100057304 3300005616 Unclassified 3371
47 Ga0068852_100066447 3300005616 Unclassified 3149
48 Ga0068861_100181136 3300005719 Bacteria 1754
49 Ga0081539_10000876 3300005985 Bacteria 57659
50 Ga0070717_10183514 3300006028 Bacteria 1825
51 Ga0070712_100001725 3300006175 Bacteria 13366
52 Ga0075366_10051581 3300006195 Unclassified 2444
53 Ga0097621_100005523 3300006237 Bacteria 8905
54 Ga0097621_100084643 3300006237 Bacteria 2644
55 Ga0068871_100003091 3300006358 Bacteria 11420
56 Ga0075433_10186769 3300006852 Bacteria 1844
57 Ga0075434_100007276 3300006871 Bacteria 10239
58 Ga0068865_100003945 3300006881 Bacteria 8904
59 Ga0105240_10000008 3300009093 Bacteria 618862
60 Ga0105240_10000326 3300009093 Bacteria 89982
61 Ga0105240_10000539 3300009093 Bacteria 70022
62 Ga0105240_10184502 3300009093 Bacteria 2458
63 Ga0105241_10047236 3300009174 Bacteria 3273
64 Ga0105242_10013853 3300009176 Bacteria 6239
65 Ga0105238_10001508 3300009551 Bacteria 23307
66 Ga0105238_10016333 3300009551 Bacteria 7513
67 Ga0105239_10002543 3300010375 Bacteria 23144
68 Ga0105239_10012903 3300010375 Bacteria 9293
69 Ga0105239_10070140 3300010375 Bacteria 3850
70 Ga0105239_10474670 3300010375 Unclassified 1420
71 Ga0157373_10000256 3300013100 Bacteria 43374
72 Ga0157373_10001534 3300013100 Bacteria 17623
73 Ga0157371_10011969 3300013102 Bacteria 6652
74 Ga0157370_10024583 3300013104 Bacteria 5967
75 Ga0157370_10147973 3300013104 Bacteria 2186
76 Ga0157374_10001971 3300013296 Bacteria 17212
77 Ga0157374_10232759 3300013296 Bacteria 1810
78 Ga0157378_10017996 3300013297 Bacteria 6203
79 Ga0157372_10000052 3300013307 Bacteria 135497
80 Ga0157372_10074044 3300013307 Bacteria 3839
81 Ga0157380_10201150 3300014326 Bacteria 1767
82 Ga0209258_100161 3300025242 Bacteria 151992
83 Ga0209026_1000320 3300025250 Bacteria 51184
84 Ga0209026_1000514 3300025250 Bacteria 27275
85 Ga0209148_1000161 3300025254 Bacteria 138759
86 Ga0209257_1000004 3300025304 Bacteria 1678347
87 Ga0207645_10010170 3300025907 Bacteria 6468
88 Ga0207654_10023630 3300025911 Bacteria 3295
89 Ga0207707_10083949 3300025912 Bacteria 2781
90 Ga0207695_10000021 3300025913 Bacteria 679399
91 Ga0207695_10000039 3300025913 Bacteria 454801
92 Ga0207695_10000371 3300025913 Bacteria 102115
93 Ga0207695_10019842 3300025913 Bacteria 7726
94 Ga0207693_10000124 3300025915 Bacteria 69213
95 Ga0207657_10006263 3300025919 Bacteria 12369
96 Ga0207681_10082614 3300025923 Bacteria 2271
97 Ga0207700_10054706 3300025928 Bacteria 2997
98 Ga0207690_10004213 3300025932 Bacteria 8499
99 Ga0207690_10013132 3300025932 Bacteria 4969
100 Ga0207704_10019037 3300025938 Bacteria 3597
101 Ga0207689_10007320 3300025942 Bacteria 9683
102 Ga0207689_10023275 3300025942 Bacteria 5201
103 Ga0207689_10035317 3300025942 Bacteria 4154
104 Ga0207661_10038320 3300025944 Bacteria 3756
105 Ga0207667_10000020 3300025949 Bacteria 374770
106 Ga0207667_10004908 3300025949 Bacteria 16334
107 Ga0207667_10108307 3300025949 Unclassified 2867
108 Ga0207651_10055619 3300025960 Bacteria 2719
109 Ga0207668_10023480 3300025972 Bacteria 3965
110 Ga0207668_10026951 3300025972 Bacteria 3738
111 Ga0207640_10024677 3300025981 Bacteria 3631
112 Ga0207677_10065741 3300026023 Bacteria 2532
113 Ga0207639_10045756 3300026041 Unclassified 3298
114 Ga0207648_10002027 3300026089 Bacteria 22124
115 Ga0207674_10001980 3300026116 Bacteria 25948
116 Ga0207674_10064022 3300026116 Bacteria 3709
117 Ga0207675_100093840 3300026118 Bacteria 2823
118 Ga0207698_10023309 3300026142 Bacteria 4322
119 Ga0268266_10023111 3300028379 Bacteria 5292
120 Ga0307517_10011419 3300028786 Bacteria 12305
121 Ga0265338_10104310 3300028800 Bacteria 2301
122 Ga0265338_10141084 3300028800 Bacteria 1887
123 Ga0265327_10023340 3300031251 Bacteria 3665
124 Ga0307508_10001107 3300031616 Bacteria 31214
125 Ga0316578_10025325 3300031728 Bacteria 3335
126 Ga0307416_100015408 3300032002 Bacteria 5281
127 Ga0307510_10007434 3300033180 Bacteria 13061
128 Ga0316574_0224086 3300035398 Bacteria 1204
129 Ga0316584_0007779 3300036712 Bacteria 7350
130 Ga0373925_0084030 3300037068 Bacteria 2425
131 Ga0395900_0066896 3300037418 Bacteria 3693
132 Ga0436364_0770560 3300037853 Bacteria 5003
133 Ga0466964_0008876 3300044706 Bacteria 3780
134 Ga0495606_0008914 3300046507 Bacteria 8592
135 Ga0495672_0075446 3300047320 Bacteria 1896
136 Ga0495686_0000102 3300047472 Bacteria 177525
137 Ga0496101_0082682 3300048904 Bacteria 2376
138 Ga0496126_0004645 3300048929 Bacteria 16240
139 Ga0501034_0039397 3300049571 Bacteria 4787
140 Ga0501046_0035845 3300049580 Bacteria 3996
141 Ga0501071_0087579 3300049587 Unclassified 2285
142 Ga0501076_0143286 3300049592 Unclassified 1942
143 Ga0501080_0252301 3300049742 Unclassified 1609
144 nmdc:mga0k408_26840_c1 3300050493 Unclassified 2451
145 nmdc:mga0n895_1975_c1 3300050512 Bacteria 15730
146 nmdc:mga0rr50_64027_c1 3300050513 Bacteria 2779
147 nmdc:mga0a205_199117_c1 3300050515 Bacteria 1894
148 Ga0500644_0000327 3300053088 Bacteria 24662
149 Ga0500583_0037075 3300053092 Unclassified 2188
150 Ga0500595_000035 3300053119 Bacteria 106463
151 Ga0500607_019874 3300053121 Bacteria 3797
152 Ga0500658_0001665 3300053134 Bacteria 8839
153 Ga0500577_0000340 3300053142 Bacteria 12048
154 Ga0500633_0006415 3300053160 Unclassified 2883
155 Ga0500636_0005957 3300053177 Bacteria 6985

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049587 Ga0501071_0087579 Ga0501071_0087579_86_1183 364
2 3300005335 Ga0070666_10041606 Ga0070666_100416061 367
3 3300035398 Ga0316574_0224086 Ga0316574_0224086_40_1173 377
4 3300049742 Ga0501080_0252301 Ga0501080_0252301_57_1268 381
5 3300049580 Ga0501046_0035845 Ga0501046_0035845_1085_2359 402
6 3300049592 Ga0501076_0143286 Ga0501076_0143286_140_1432 407
7 3300028800 Ga0265338_10141084 Ga0265338_101410841 410
8 3300049571 Ga0501034_0039397 Ga0501034_0039397_1119_2396 410
9 3300031251 Ga0265327_10023340 Ga0265327_100233404 414
10 3300003203 JGI25406J46586_10003118 JGI25406J46586_100031188 419
11 3300005985 Ga0081539_10000876 Ga0081539_1000087611 419
12 3300005544 Ga0070686_100013035 Ga0070686_1000130354 421
13 3300037068 Ga0373925_0084030 Ga0373925_0084030_335_1603 421
14 3300036712 Ga0316584_0007779 Ga0316584_0007779_481_1788 422
15 3300005436 Ga0070713_100284704 Ga0070713_1002847041 424
16 3300006028 Ga0070717_10183514 Ga0070717_101835142 424
17 3300006175 Ga0070712_100001725 Ga0070712_1000017251 424
18 3300006852 Ga0075433_10186769 Ga0075433_101867691 424
19 3300006871 Ga0075434_100007276 Ga0075434_1000072768 424
20 3300025915 Ga0207693_10000124 Ga0207693_1000012414 424
21 3300025928 Ga0207700_10054706 Ga0207700_100547062 424
22 3300050512 nmdc:mga0n895_1975_c1 nmdc:mga0n895_1975_c1_1328_2635 424
23 3300050513 nmdc:mga0rr50_64027_c1 nmdc:mga0rr50_64027_c1_1202_2509 424
24 3300050515 nmdc:mga0a205_199117_c1 nmdc:mga0a205_199117_c1_361_1668 424
25 3300005458 Ga0070681_10100663 Ga0070681_101006632 425
26 3300025912 Ga0207707_10083949 Ga0207707_100839492 425
27 3300053119 Ga0500595_000035 Ga0500595_000035_196_1476 425
28 3300005616 Ga0068852_100057304 Ga0068852_1000573042 426
29 3300009093 Ga0105240_10000008 Ga0105240_10000008293 426
30 3300009093 Ga0105240_10000326 Ga0105240_1000032650 426
31 3300009093 Ga0105240_10184502 Ga0105240_101845022 426
32 3300009551 Ga0105238_10016333 Ga0105238_100163333 426
33 3300010375 Ga0105239_10002543 Ga0105239_1000254321 426
34 3300010375 Ga0105239_10012903 Ga0105239_100129034 426
35 3300025913 Ga0207695_10000021 Ga0207695_10000021107 426
36 3300025913 Ga0207695_10000039 Ga0207695_10000039150 426
37 3300025913 Ga0207695_10019842 Ga0207695_100198426 426
38 3300044706 Ga0466964_0008876 Ga0466964_0008876_2231_3538 426
39 3300046507 Ga0495606_0008914 Ga0495606_0008914_6871_8181 426
40 3300033180 Ga0307510_10007434 Ga0307510_100074345 427
41 3300037418 Ga0395900_0066896 Ga0395900_0066896_137_1495 428
42 3300005366 Ga0070659_100000449 Ga0070659_10000044911 429
43 3300006195 Ga0075366_10051581 Ga0075366_100515812 429
44 3300025932 Ga0207690_10004213 Ga0207690_100042136 429
45 3300050493 nmdc:mga0k408_26840_c1 nmdc:mga0k408_26840_c1_136_1425 429
46 3300003320 rootH2_10070555 rootH2_100705554 430
47 3300025250 Ga0209026_1000320 Ga0209026_10003203 430
48 3300037853 Ga0436364_0770560 Ga0436364_0770560_1396_2721 430
49 3300028786 Ga0307517_10011419 Ga0307517_100114196 431
50 3300005563 Ga0068855_100049327 Ga0068855_1000493275 432
51 3300005577 Ga0068857_100000913 Ga0068857_1000009139 432
52 3300005578 Ga0068854_100006953 Ga0068854_1000069536 432
53 3300005616 Ga0068852_100000505 Ga0068852_10000050516 432
54 3300009174 Ga0105241_10047236 Ga0105241_100472363 432
55 3300013307 Ga0157372_10000052 Ga0157372_1000005275 432
56 3300025911 Ga0207654_10023630 Ga0207654_100236302 432
57 3300025949 Ga0207667_10004908 Ga0207667_100049085 432
58 3300025981 Ga0207640_10024677 Ga0207640_100246771 432
59 3300026116 Ga0207674_10001980 Ga0207674_1000198014 432
60 3300032002 Ga0307416_100015408 Ga0307416_1000154082 432
61 3300028800 Ga0265338_10104310 Ga0265338_101043102 433
62 3300003320 rootH2_10015843 rootH2_100158433 434
63 3300003322 rootL2_10154631 rootL2_101546311 434
64 3300005563 Ga0068855_100000019 Ga0068855_100000019157 434
65 3300005614 Ga0068856_100057618 Ga0068856_1000576182 434
66 3300025949 Ga0207667_10000020 Ga0207667_1000002012 434
67 iso_pu_bacteria 2911138879 2911143917 434
68 3300003320 rootH2_10064832 rootH2_100648324 435
69 3300003322 rootL2_10031014 rootL2_100310142 435
70 3300003322 rootL2_10217415 rootL2_102174152 435
71 3300003322 rootL2_10253894 rootL2_102538945 435
72 3300003761 Ga0055535_1000775 Ga0055535_100077517 435
73 3300003762 Ga0055542_1003582 Ga0055542_10035824 435
74 3300003794 Ga0055531_10000026 Ga0055531_10000026123 435
75 3300005328 Ga0070676_10011910 Ga0070676_100119103 435
76 3300005329 Ga0070683_100007186 Ga0070683_1000071867 435
77 3300005334 Ga0068869_100045377 Ga0068869_1000453772 435
78 3300005338 Ga0068868_100018589 Ga0068868_1000185892 435
79 3300005338 Ga0068868_100062228 Ga0068868_1000622282 435
80 3300005339 Ga0070660_100005695 Ga0070660_1000056952 435
81 3300005347 Ga0070668_100008948 Ga0070668_1000089485 435
82 3300005354 Ga0070675_100152464 Ga0070675_1001524641 435
83 3300005355 Ga0070671_100037983 Ga0070671_1000379832 435
84 3300005364 Ga0070673_100087698 Ga0070673_1000876984 435
85 3300005366 Ga0070659_100003058 Ga0070659_10000305812 435
86 3300005459 Ga0068867_100017537 Ga0068867_1000175374 435
87 3300005535 Ga0070684_100085140 Ga0070684_1000851402 435
88 3300005539 Ga0068853_100046389 Ga0068853_1000463893 435
89 3300005548 Ga0070665_100014332 Ga0070665_1000143323 435
90 3300005563 Ga0068855_100026670 Ga0068855_1000266703 435
91 3300005564 Ga0070664_100009814 Ga0070664_1000098146 435
92 3300005578 Ga0068854_100020759 Ga0068854_1000207596 435
93 3300005578 Ga0068854_100111465 Ga0068854_1001114652 435
94 3300005614 Ga0068856_100007294 Ga0068856_1000072949 435
95 3300005616 Ga0068852_100002166 Ga0068852_10000216612 435
96 3300005616 Ga0068852_100066447 Ga0068852_1000664472 435
97 3300005719 Ga0068861_100181136 Ga0068861_1001811361 435
98 3300006237 Ga0097621_100005523 Ga0097621_1000055234 435
99 3300006237 Ga0097621_100084643 Ga0097621_1000846431 435
100 3300006358 Ga0068871_100003091 Ga0068871_1000030914 435
101 3300006881 Ga0068865_100003945 Ga0068865_1000039454 435
102 3300009093 Ga0105240_10000539 Ga0105240_1000053941 435
103 3300009176 Ga0105242_10013853 Ga0105242_100138535 435
104 3300009551 Ga0105238_10001508 Ga0105238_100015084 435
105 3300010375 Ga0105239_10070140 Ga0105239_100701402 435
106 3300010375 Ga0105239_10474670 Ga0105239_104746701 435
107 3300013100 Ga0157373_10001534 Ga0157373_100015347 435
108 3300013102 Ga0157371_10011969 Ga0157371_100119691 435
109 3300013104 Ga0157370_10024583 Ga0157370_100245832 435
110 3300013296 Ga0157374_10001971 Ga0157374_100019713 435
111 3300013296 Ga0157374_10232759 Ga0157374_102327591 435
112 3300013297 Ga0157378_10017996 Ga0157378_100179962 435
113 3300013307 Ga0157372_10074044 Ga0157372_100740442 435
114 3300014326 Ga0157380_10201150 Ga0157380_102011502 435
115 3300025242 Ga0209258_100161 Ga0209258_10016152 435
116 3300025254 Ga0209148_1000161 Ga0209148_100016121 435
117 3300025304 Ga0209257_1000004 Ga0209257_1000004885 435
118 3300025907 Ga0207645_10010170 Ga0207645_100101703 435
119 3300025913 Ga0207695_10000371 Ga0207695_1000037129 435
120 3300025919 Ga0207657_10006263 Ga0207657_100062632 435
121 3300025923 Ga0207681_10082614 Ga0207681_100826142 435
122 3300025932 Ga0207690_10013132 Ga0207690_100131322 435
123 3300025938 Ga0207704_10019037 Ga0207704_100190372 435
124 3300025942 Ga0207689_10007320 Ga0207689_100073207 435
125 3300025942 Ga0207689_10023275 Ga0207689_100232753 435
126 3300025942 Ga0207689_10035317 Ga0207689_100353173 435
127 3300025949 Ga0207667_10108307 Ga0207667_101083072 435
128 3300025960 Ga0207651_10055619 Ga0207651_100556193 435
129 3300025972 Ga0207668_10023480 Ga0207668_100234803 435
130 3300025972 Ga0207668_10026951 Ga0207668_100269512 435
131 3300026023 Ga0207677_10065741 Ga0207677_100657412 435
132 3300026041 Ga0207639_10045756 Ga0207639_100457563 435
133 3300026089 Ga0207648_10002027 Ga0207648_100020277 435
134 3300026116 Ga0207674_10064022 Ga0207674_100640222 435
135 3300026118 Ga0207675_100093840 Ga0207675_1000938401 435
136 3300026142 Ga0207698_10023309 Ga0207698_100233092 435
137 3300028379 Ga0268266_10023111 Ga0268266_100231113 435
138 3300031616 Ga0307508_10001107 Ga0307508_100011078 435
139 3300031728 Ga0316578_10025325 Ga0316578_100253251 435
140 3300047320 Ga0495672_0075446 Ga0495672_0075446_405_1760 435
141 3300047472 Ga0495686_0000102 Ga0495686_0000102_145403_146770 435
142 3300048904 Ga0496101_0082682 Ga0496101_0082682_74_1417 435
143 3300048929 Ga0496126_0004645 Ga0496126_0004645_13045_14388 435
144 3300053088 Ga0500644_0000327 Ga0500644_0000327_1148_2488 435
145 3300053092 Ga0500583_0037075 Ga0500583_0037075_30_1370 435
146 3300053121 Ga0500607_019874 Ga0500607_019874_1670_3010 435
147 3300053134 Ga0500658_0001665 Ga0500658_0001665_3531_4871 435
148 3300053142 Ga0500577_0000340 Ga0500577_0000340_5375_6715 435
149 3300053160 Ga0500633_0006415 Ga0500633_0006415_372_1712 435
150 3300053177 Ga0500636_0005957 Ga0500636_0005957_4567_5907 435
151 iso_pu_bacteria 2839989709 2839991753 435
152 iso_pu_bacteria 2910245624 2910248467 435
153 iso_pu_bacteria 2929239360 2929245674 435
154 3300002741 JGI25157J39369_1002961 JGI25157J39369_10029612 437
155 3300005329 Ga0070683_100042389 Ga0070683_1000423894 437
156 3300013100 Ga0157373_10000256 Ga0157373_1000025618 437
157 3300013104 Ga0157370_10147973 Ga0157370_101479732 437
158 3300025250 Ga0209026_1000514 Ga0209026_10005149 437
159 3300025944 Ga0207661_10038320 Ga0207661_100383202 437

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22366

NDH2_C

NDH2 C-terminal domain

372

430

0.96

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

176

266

0.87

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

23

348

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5jwb-assembly1.cif.gz_H structure of ndh2 from plasmodium falciparum in complex with nadh 0.9146 8 419
5kmp-assembly1.cif.gz_A the structure of g164e variant of type ii nadh dehydrogenase from caldalkalibacillus thermarum 0.9136 10 397
5na4-assembly1.cif.gz_A nadh:quinone oxidoreductase (ndh-ii) from staphylococcus aureus - e172s mutant 0.9122 10 399
5kmr-assembly2.cif.gz_C the structure of type ii nadh dehydrogenase from caldalkalibacillus thermarum complexed with nad+ at 3.0 angstrom resolution. 0.9101 10 401
5jwb-assembly1.cif.gz_A structure of ndh2 from plasmodium falciparum in complex with nadh 0.9082 8 419
ID Description Score Start End Superfamily
af_P95200_9_428_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9391 9 407 3.50.50.100
af_Q6YZ09_48_354_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9299 1 270 3.50.50.100
af_Q8H5X6_117_561_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9257 4 416 3.50.50.100
af_Q8I302_30_421_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9187 4 310 3.50.50.100
af_Q5QLT6_55_454_3.50.50.100 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9166 4 373 3.50.50.100
ID Description Score Start End GO Terms
AF-A0A6M1E578-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9881 1 423 GO:0003954
GO:0006116
GO:0016020
AF-A0A4Q3EK23-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9877 1 339 GO:0003954
GO:0006116
AF-A0A2N2WZC9-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9855 6 421 GO:0003954
GO:0006116
AF-A0A3B9EVJ3-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9847 6 276 GO:0003954
GO:0006116
AF-A0A4Q5WU76-F1-model_v4 NADH:ubiquinone reductase (non-electrogenic) (EC 1.6.5.9) 0.9846 11 221 GO:0003954
GO:0006116

Feature Viewer

pLDDT pTM Quality
90.34 0.87 High
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Predicted Structure (AlphaFold2)

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