F232456

General Info

Members Datasets Scaffolds Average Seq Length
159 139 125 1098

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10000003|Ga0307515_10000003139
Length 1147
Sequence LVNSFCCIRFNKVALVSLFYSFSGQSPGPDKLLPTTCMPTKENNFDEQLHWYKDAVIYELHIKAFRDGNGDGIGDFKGLLEKLDYLQDLGITAIWLLPFYPSPQKDDGYDIADYYTINPSYGDITQFKQFLEEAHKRNLKVITELVINHTSDQHPWFQRARLSPKDSDERNFYVWTDDPTQYKDVRIIFQDFETSNWTWDPIAKQYYWHRFFYHQPDLNYNSSLVQEEVFKIIDFWCRIGVDGFRLDAVPYLFEREGTNGENLPETHAFLKKLRSYVDQHFPGTLLLAEANMWPEDSASYFGDGDECQMNYHFPVMPRMFMALQMEDRYPITDIFDQTPAIPDNCQWAIFLRNHDELTLEMVTDEERDYMYKVYVKDPRARINLGIRHRLAPLMANNRKKIELLNYLLFSLPGTPVIYYGDEIGMGDNFYLGDRNGVRTPMQWTPGRNGGFSETNPHKLYLPVILDPDYHYELVNVEMQQYKALSRGDLKFIPCDNPKILAFTRTFEEQSILVIVNLSRYTQPVELDLEVFYGYMPVEVFSRNKFPTIKEKSPYFFTLSQYDCEWFVLEKTHDPLDTKKTLPSLTIDDWEHLLRKTNSFNMDNSVLISYMMKMRWFGGKSRVLESMRIINHATISLATHSIYLLLIEVTYQSGLPEIYQLPVAFGTGDFANKLKESCPQSVIALLSAGDEEGVVYDAIYGMELQEAIFTHMGNNKIISQDNSEILFIGNKKLHDYVQSIEKVKPRVLSAEQSNTSITYDNLYFLKLFRKVERAMNPDVELSHFLTKYAAFKYIPSFIGTVEWKNENGTLILGMMQEMVESNGDAWKYMLDRLDDFNERILVHTEYSSPPEELYGSFTDPVAYEEIPAMMKELIEGPLAERAHLLGIRTGEMHLALASGNDLADFKPESYSLHYQRSLYAGLQSLVRSTFNNQSKNINGLSSEVRQTAEEVIADVVKIRIHGDYHLGQVLFTGKDFVITDFEGEPARSYSERRLKRSPLRDVAGMIRSFHYAAYASLFLDNQIRKEDFARLIPFVEQWYHYISNFFMKAYLDTVKGSAFIPKDKEDLNTLMTTFLLEKAIYELNYELNNRPDWVIIPLRGIKAIMHKDILSTTKYNGQDMHKESDEHFVSGSAAFHSASATVNPGPLS

Samples

Sample ID Description Type Environment
1 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
2 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
3 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
4 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
5 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
6 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
7 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
8 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
9 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
10 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
11 2643221558 Rhizobium sp. Root149 Isolate Unclassified
12 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
13 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
14 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
15 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
16 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
17 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
18 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
19 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
20 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
21 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
22 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
23 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
24 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
25 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
26 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
27 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
28 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
29 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
30 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
31 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
32 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
33 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
34 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
35 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
36 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
37 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
38 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
39 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
40 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
41 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
42 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
43 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
44 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
45 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
46 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
47 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
48 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
49 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
50 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
51 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
52 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
53 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
58 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
59 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
60 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
61 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
63 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
64 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
66 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
80 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
81 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
82 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
83 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
84 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
85 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
86 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
89 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
90 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
91 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
92 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
93 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
94 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
95 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
96 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
97 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
98 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
99 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
100 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
101 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
102 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
103 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
104 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
105 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
109 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
110 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
111 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
112 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
113 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
120 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
126 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
127 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
128 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
131 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
132 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
133 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
134 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
137 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
138 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
139 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.62
Metatranscriptomes 0
Isolates 21.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.58
Nodule 7.55
Rhizoplane 6.92
Rhizosphere 54.09
Stem 0
Stem Tuber 0
Unclassified 18.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25156J39149_1000369 3300002705 Bacteria 28974
2 JGI25154J39366_1000295 3300002738 Bacteria 29667
3 JGI25157J39369_1000412 3300002741 Bacteria 28945
4 rootH1_10027403 3300003323 Bacteria 72977
5 Ga0065165_1001279 3300005262 Bacteria 28419
6 Ga0065165_1007186 3300005262 Bacteria 5564
7 Ga0070676_10008075 3300005328 Bacteria 5659
8 Ga0070690_100001882 3300005330 Bacteria 11142
9 Ga0070689_100004713 3300005340 Bacteria 9254
10 Ga0070661_100030167 3300005344 Bacteria 3917
11 Ga0070674_100002333 3300005356 Bacteria 10475
12 Ga0070673_100005241 3300005364 Bacteria 8276
13 Ga0070688_100006174 3300005365 Bacteria 6378
14 Ga0070681_10022211 3300005458 Bacteria 6369
15 Ga0070707_100030773 3300005468 Bacteria 5112
16 Ga0070679_100046081 3300005530 Bacteria 4345
17 Ga0070695_100007586 3300005545 Bacteria 6427
18 Ga0070696_100000514 3300005546 Bacteria 24531
19 Ga0068859_100040041 3300005617 Bacteria 4703
20 Ga0068858_100018745 3300005842 Bacteria 6474
21 Ga0081539_10000513 3300005985 Bacteria 80514
22 Ga0075436_100003278 3300006914 Bacteria 11089
23 Ga0097620_100040042 3300006931 Bacteria 4703
24 Ga0111539_10020399 3300009094 Bacteria 8162
25 Ga0157371_10007675 3300013102 Bacteria 8685
26 Ga0157374_10038160 3300013296 Bacteria 4414
27 Ga0182006_1002565 3300015261 Bacteria 9842
28 Ga0209435_100086 3300025206 Bacteria 45054
29 Ga0209646_1000279 3300025246 Bacteria 45163
30 Ga0209026_1000341 3300025250 Bacteria 45163
31 Ga0209677_100708 3300025253 Bacteria 17018
32 Ga0209759_1000471 3300025256 Bacteria 45163
33 Ga0209233_1000214 3300025261 Bacteria 108975
34 Ga0209025_1000104 3300025294 Bacteria 226895
35 Ga0209758_1000191 3300025297 Bacteria 136984
36 Ga0209758_1016394 3300025297 Bacteria 3768
37 Ga0209050_1003982 3300025298 Bacteria 10420
38 Ga0209051_1003436 3300025303 Bacteria 10383
39 Ga0209257_1009520 3300025304 Bacteria 5172
40 Ga0207645_10007981 3300025907 Bacteria 7426
41 Ga0207646_10030334 3300025922 Bacteria 4903
42 Ga0207670_10004332 3300025936 Bacteria 7625
43 Ga0207670_10023550 3300025936 Bacteria 3835
44 Ga0207691_10016497 3300025940 Bacteria 7011
45 Ga0207667_10048521 3300025949 Bacteria 4489
46 Ga0207651_10005109 3300025960 Bacteria 6699
47 Ga0207708_10002460 3300026075 Bacteria 13617
48 Ga0207648_10005216 3300026089 Bacteria 13145
49 Ga0207683_10014937 3300026121 Bacteria 6610
50 Ga0209371_1001514 3300027312 Bacteria 15415
51 Ga0207428_10008187 3300027907 Bacteria 9462
52 Ga0307515_10000003 3300028794 Bacteria 891317
53 Ga0307515_10000616 3300028794 Bacteria 83207
54 Ga0265338_10009077 3300028800 Bacteria 11959
55 Ga0268256_1001298 3300030500 Bacteria 15435
56 Ga0316579_10002975 3300031691 Bacteria 6512
57 Ga0316576_10002328 3300031727 Bacteria 10780
58 Ga0316578_10002429 3300031728 Bacteria 8169
59 Ga0316577_10000168 3300031733 Bacteria 20960
60 Ga0307416_100010332 3300032002 Bacteria 6161
61 Ga0373950_0000017 3300034818 Bacteria 271422
62 Ga0373943_0010021 3300035170 Bacteria 4250
63 Ga0316584_0021388 3300036712 Bacteria 4700
64 Ga0439432_007171 3300042006 Bacteria 3960
65 Ga0450920_001473 3300042122 Bacteria 3897
66 Ga0453683_0000651 3300044673 Bacteria 37356
67 Ga0453683_0001113 3300044673 Bacteria 24541
68 Ga0453683_0001304 3300044673 Bacteria 21991
69 Ga0466965_0009017 3300044683 Bacteria 4627
70 Ga0466963_0009367 3300044694 Bacteria 5897
71 Ga0466963_0010405 3300044694 Bacteria 5630
72 Ga0466970_0000131 3300044765 Bacteria 34196
73 Ga0466967_0012773 3300045976 Bacteria 6450
74 Ga0495638_0000026 3300046460 Bacteria 347061
75 Ga0495610_0002759 3300046512 Bacteria 14395
76 Ga0495654_0000043 3300046530 Bacteria 161913
77 Ga0495634_0001393 3300046642 Bacteria 21750
78 Ga0495686_0000268 3300047472 Bacteria 93255
79 Ga0496101_0016154 3300048904 Bacteria 5039
80 Ga0496106_0000088 3300048909 Bacteria 73338
81 Ga0496106_0008708 3300048909 Bacteria 7508
82 Ga0496106_0023900 3300048909 Bacteria 4541
83 Ga0496107_0017904 3300048910 Bacteria 4987
84 Ga0496111_0000097 3300048914 Bacteria 37708
85 Ga0496114_0000221 3300048917 Bacteria 41396
86 Ga0496114_0001449 3300048917 Bacteria 17998
87 Ga0496121_0000426 3300048924 Bacteria 82870
88 Ga0496121_0011586 3300048924 Bacteria 9762
89 Ga0496122_0000009 3300048925 Bacteria 584024
90 Ga0496123_0000020 3300048926 Bacteria 388748
91 Ga0496124_0014400 3300048927 Bacteria 7646
92 Ga0496126_0000670 3300048929 Bacteria 63371
93 Ga0501034_0000059 3300049571 Bacteria 198017
94 Ga0501034_0018454 3300049571 Bacteria 7154
95 Ga0501039_0020604 3300049575 Bacteria 5053
96 Ga0501040_0006608 3300049576 Bacteria 7529
97 Ga0501046_0000532 3300049580 Bacteria 37748
98 Ga0501047_0000035 3300049581 Bacteria 198028
99 Ga0501048_0000144 3300049582 Bacteria 43444
100 Ga0501067_0019795 3300049583 Bacteria 3725
101 Ga0501071_0000237 3300049587 Bacteria 25271
102 Ga0501072_0000014 3300049588 Bacteria 170672
103 Ga0501072_0004028 3300049588 Bacteria 11117
104 Ga0501074_0000810 3300049590 Bacteria 19772
105 Ga0501223_000904 3300049663 Bacteria 7020
106 Ga0501080_0001240 3300049742 Bacteria 21225
107 Ga0501081_0000645 3300049743 Bacteria 19908
108 Ga0501264_000093 3300049761 Bacteria 13095
109 nmdc:mga08y16_6973_c1 3300050511 Bacteria 11848
110 nmdc:mga0n895_11402_c1 3300050512 Bacteria 7930
111 nmdc:mga0rr50_14597_c1 3300050513 Bacteria 5159
112 nmdc:mga08x19_5332_c1 3300050514 Bacteria 7601
113 Ga0500562_000087 3300053108 Bacteria 38418
114 Ga0500618_000204 3300053125 Bacteria 47175
115 Ga0500618_000665 3300053125 Bacteria 20266
116 Ga0500616_0000068 3300053153 Bacteria 235628
117 Ga0500616_0000777 3300053153 Bacteria 36725
118 Ga0500616_0001181 3300053153 Bacteria 26583
119 Ga0500622_0000031 3300053156 Bacteria 207165
120 Ga0500622_0000039 3300053156 Bacteria 170859
121 Ga0500622_0000572 3300053156 Bacteria 33594
122 Ga0500622_0003550 3300053156 Bacteria 10327
123 Ga0501084_0000008 3300054114 Bacteria 198002
124 Ga0501082_0001067 3300060353 Bacteria 24267
125 Ga0501082_0002491 3300060353 Bacteria 16139

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048909 Ga0496106_0008708 Ga0496106_0008708_1143_3860 905
2 3300049588 Ga0501072_0004028 Ga0501072_0004028_2910_5810 943
3 3300009094 Ga0111539_10020399 Ga0111539_100203992 1028
4 3300027907 Ga0207428_10008187 Ga0207428_100081876 1028
5 3300050511 nmdc:mga08y16_6973_c1 nmdc:mga08y16_6973_c1_5959_9273 1028
6 3300005364 Ga0070673_100005241 Ga0070673_1000052412 1039
7 3300026089 Ga0207648_10005216 Ga0207648_100052162 1039
8 3300005328 Ga0070676_10008075 Ga0070676_100080754 1040
9 3300005356 Ga0070674_100002333 Ga0070674_1000023334 1040
10 3300005842 Ga0068858_100018745 Ga0068858_1000187454 1040
11 3300025907 Ga0207645_10007981 Ga0207645_100079814 1040
12 3300026075 Ga0207708_10002460 Ga0207708_100024606 1040
13 3300035170 Ga0373943_0010021 Ga0373943_0010021_258_3572 1041
14 3300053125 Ga0500618_000665 Ga0500618_000665_9879_13193 1041
15 3300005546 Ga0070696_100000514 Ga0070696_10000051411 1042
16 3300025936 Ga0207670_10004332 Ga0207670_100043326 1044
17 3300046642 Ga0495634_0001393 Ga0495634_0001393_14661_17972 1044
18 3300048917 Ga0496114_0000221 Ga0496114_0000221_37456_40770 1045
19 3300005344 Ga0070661_100030167 Ga0070661_1000301671 1049
20 3300028794 Ga0307515_10000003 Ga0307515_10000003139 1049
21 3300005330 Ga0070690_100001882 Ga0070690_1000018822 1051
22 3300025960 Ga0207651_10005109 Ga0207651_100051094 1056
23 3300026121 Ga0207683_10014937 Ga0207683_100149372 1056
24 3300028800 Ga0265338_10009077 Ga0265338_100090775 1056
25 3300025940 Ga0207691_10016497 Ga0207691_100164974 1057
26 3300048917 Ga0496114_0001449 Ga0496114_0001449_1582_4893 1058
27 3300025298 Ga0209050_1003982 Ga0209050_10039825 1061
28 3300034818 Ga0373950_0000017 Ga0373950_0000017_192688_195981 1061
29 3300044673 Ga0453683_0000651 Ga0453683_0000651_7197_10541 1061
30 3300049571 Ga0501034_0000059 Ga0501034_0000059_45325_48618 1061
31 3300049580 Ga0501046_0000532 Ga0501046_0000532_25632_28925 1061
32 3300049581 Ga0501047_0000035 Ga0501047_0000035_149530_152823 1061
33 3300049582 Ga0501048_0000144 Ga0501048_0000144_17685_20978 1061
34 3300049588 Ga0501072_0000014 Ga0501072_0000014_11119_14412 1061
35 3300049590 Ga0501074_0000810 Ga0501074_0000810_1596_4889 1061
36 3300049742 Ga0501080_0001240 Ga0501080_0001240_298_3591 1061
37 3300054114 Ga0501084_0000008 Ga0501084_0000008_45205_48498 1061
38 3300060353 Ga0501082_0001067 Ga0501082_0001067_14204_17497 1061
39 3300005617 Ga0068859_100040041 Ga0068859_1000400412 1062
40 3300006931 Ga0097620_100040042 Ga0097620_1000400423 1062
41 3300025294 Ga0209025_1000104 Ga0209025_100010434 1063
42 3300006914 Ga0075436_100003278 Ga0075436_1000032783 1064
43 iso_pu_bacteria 2929154850 2929159195 1064
44 3300005545 Ga0070695_100007586 Ga0070695_1000075862 1065
45 3300005985 Ga0081539_10000513 Ga0081539_1000051373 1065
46 3300048909 Ga0496106_0023900 Ga0496106_0023900_114_3401 1066
47 3300049571 Ga0501034_0018454 Ga0501034_0018454_2291_5665 1067
48 3300053108 Ga0500562_000087 Ga0500562_000087_8796_12092 1067
49 3300013296 Ga0157374_10038160 Ga0157374_100381602 1068
50 3300053156 Ga0500622_0000572 Ga0500622_0000572_20483_23782 1068
51 3300031691 Ga0316579_10002975 Ga0316579_100029753 1071
52 3300031728 Ga0316578_10002429 Ga0316578_100024291 1071
53 3300031733 Ga0316577_10000168 Ga0316577_1000016815 1071
54 3300036712 Ga0316584_0021388 Ga0316584_0021388_1184_4522 1071
55 3300005458 Ga0070681_10022211 Ga0070681_100222112 1072
56 3300005530 Ga0070679_100046081 Ga0070679_1000460812 1072
57 3300025949 Ga0207667_10048521 Ga0207667_100485212 1072
58 3300044694 Ga0466963_0010405 Ga0466963_0010405_822_4136 1072
59 3300045976 Ga0466967_0012773 Ga0466967_0012773_2073_5387 1072
60 3300048904 Ga0496101_0016154 Ga0496101_0016154_867_4178 1072
61 3300048910 Ga0496107_0017904 Ga0496107_0017904_63_3374 1072
62 3300049583 Ga0501067_0019795 Ga0501067_0019795_144_3455 1072
63 3300050512 nmdc:mga0n895_11402_c1 nmdc:mga0n895_11402_c1_1085_4396 1072
64 3300050513 nmdc:mga0rr50_14597_c1 nmdc:mga0rr50_14597_c1_1705_5016 1072
65 3300050514 nmdc:mga08x19_5332_c1 nmdc:mga08x19_5332_c1_3561_6872 1072
66 3300053153 Ga0500616_0001181 Ga0500616_0001181_5645_8983 1072
67 3300047472 Ga0495686_0000268 Ga0495686_0000268_45206_48562 1074
68 iso_pu_bacteria 2522125168 2522551816 1074
69 3300003323 rootH1_10027403 rootH1_1002740346 1077
70 3300005468 Ga0070707_100030773 Ga0070707_1000307732 1077
71 3300025922 Ga0207646_10030334 Ga0207646_100303342 1077
72 3300042122 Ga0450920_001473 Ga0450920_001473_255_3566 1077
73 3300049575 Ga0501039_0020604 Ga0501039_0020604_1481_4792 1077
74 3300049576 Ga0501040_0006608 Ga0501040_0006608_3829_7140 1077
75 3300049587 Ga0501071_0000237 Ga0501071_0000237_6902_10213 1077
76 3300049663 Ga0501223_000904 Ga0501223_000904_2817_6146 1077
77 3300049743 Ga0501081_0000645 Ga0501081_0000645_15567_18878 1077
78 3300053156 Ga0500622_0000039 Ga0500622_0000039_97726_101097 1077
79 3300053156 Ga0500622_0003550 Ga0500622_0003550_5828_9202 1077
80 3300060353 Ga0501082_0002491 Ga0501082_0002491_10286_13597 1077
81 3300005262 Ga0065165_1001279 Ga0065165_100127914 1078
82 3300044673 Ga0453683_0001113 Ga0453683_0001113_14894_18220 1078
83 3300044673 Ga0453683_0001304 Ga0453683_0001304_205_3567 1078
84 3300046460 Ga0495638_0000026 Ga0495638_0000026_244353_247712 1078
85 3300049761 Ga0501264_000093 Ga0501264_000093_1430_4780 1078
86 3300013102 Ga0157371_10007675 Ga0157371_100076752 1079
87 3300015261 Ga0182006_1002565 Ga0182006_10025657 1079
88 3300032002 Ga0307416_100010332 Ga0307416_1000103323 1079
89 3300028794 Ga0307515_10000616 Ga0307515_1000061670 1080
90 3300042006 Ga0439432_007171 Ga0439432_007171_606_3923 1084
91 3300053153 Ga0500616_0000068 Ga0500616_0000068_107074_110478 1084
92 3300053156 Ga0500622_0000031 Ga0500622_0000031_63991_67413 1084
93 3300005340 Ga0070689_100004713 Ga0070689_1000047132 1085
94 3300005365 Ga0070688_100006174 Ga0070688_1000061742 1085
95 3300025936 Ga0207670_10023550 Ga0207670_100235502 1085
96 3300044683 Ga0466965_0009017 Ga0466965_0009017_49_3426 1090
97 iso_pu_bacteria 2643221558 2643811615 1090
98 3300031727 Ga0316576_10002328 Ga0316576_100023283 1092
99 iso_pu_bacteria 2667528174 2671117180 1093
100 iso_pu_bacteria 2818991448 2819613646 1093
101 iso_pu_bacteria 2919408235 2919414179 1093
102 iso_pu_bacteria 8005645114 8005647452 1093
103 iso_pu_bacteria 8005682033 8005686174 1093
104 iso_pu_bacteria 8056875544 8056877251 1093
105 3300053125 Ga0500618_000204 Ga0500618_000204_39043_42327 1094
106 3300046530 Ga0495654_0000043 Ga0495654_0000043_136577_139891 1095
107 iso_pu_bacteria 2599185236 2599719378 1095
108 iso_pu_bacteria 2818991461 2819683126 1095
109 iso_pu_bacteria 2821123053 2821123820 1095
110 iso_pu_bacteria 2838736955 2838739150 1095
111 iso_pu_bacteria 2841840854 2841843048 1095
112 iso_pu_bacteria 2842140634 2842142830 1095
113 iso_pu_bacteria 2854896431 2854898461 1095
114 iso_pu_bacteria 2854916844 2854917763 1095
115 iso_pu_bacteria 2857531043 2857531382 1095
116 iso_pu_bacteria 2513237138 2513866191 1096
117 iso_pu_bacteria 2513237144 2513911683 1096
118 iso_pu_bacteria 2600254933 2600374886 1096
119 iso_pu_bacteria 2919171160 2919171875 1096
120 iso_pu_bacteria 2923556063 2923561216 1096
121 iso_pu_bacteria 3005409236 3005413698 1096
122 3300002705 JGI25156J39149_1000369 JGI25156J39149_100036917 1097
123 3300002738 JGI25154J39366_1000295 JGI25154J39366_10002958 1097
124 3300002741 JGI25157J39369_1000412 JGI25157J39369_100041217 1097
125 3300005262 Ga0065165_1007186 Ga0065165_10071862 1097
126 3300025206 Ga0209435_100086 Ga0209435_1000868 1097
127 3300025246 Ga0209646_1000279 Ga0209646_10002798 1097
128 3300025250 Ga0209026_1000341 Ga0209026_10003418 1097
129 3300025253 Ga0209677_100708 Ga0209677_1007083 1097
130 3300025256 Ga0209759_1000471 Ga0209759_10004718 1097
131 3300025261 Ga0209233_1000214 Ga0209233_10002142 1097
132 3300025297 Ga0209758_1000191 Ga0209758_100019139 1097
133 3300025297 Ga0209758_1016394 Ga0209758_10163942 1097
134 3300025303 Ga0209051_1003436 Ga0209051_10034368 1097
135 3300025304 Ga0209257_1009520 Ga0209257_10095202 1097
136 3300027312 Ga0209371_1001514 Ga0209371_10015142 1097
137 3300030500 Ga0268256_1001298 Ga0268256_10012982 1097
138 3300044694 Ga0466963_0009367 Ga0466963_0009367_433_3726 1097
139 3300044765 Ga0466970_0000131 Ga0466970_0000131_19842_23135 1097
140 3300046512 Ga0495610_0002759 Ga0495610_0002759_6871_10167 1097
141 3300048909 Ga0496106_0000088 Ga0496106_0000088_8092_11385 1097
142 3300048914 Ga0496111_0000097 Ga0496111_0000097_5879_9205 1097
143 3300048924 Ga0496121_0000426 Ga0496121_0000426_40973_44308 1097
144 3300048924 Ga0496121_0011586 Ga0496121_0011586_5353_8649 1097
145 3300048925 Ga0496122_0000009 Ga0496122_0000009_349466_352777 1097
146 3300048926 Ga0496123_0000020 Ga0496123_0000020_153918_157229 1097
147 3300048927 Ga0496124_0014400 Ga0496124_0014400_4288_7584 1097
148 3300048929 Ga0496126_0000670 Ga0496126_0000670_3247_6543 1097
149 3300053153 Ga0500616_0000777 Ga0500616_0000777_13333_16644 1097
150 iso_pu_bacteria 2510917026 2511172566 1097
151 iso_pu_bacteria 2513237146 2513927815 1097
152 iso_pu_bacteria 2585427633 2585994665 1097
153 iso_pu_bacteria 2585427634 2585999149 1097
154 iso_pu_bacteria 2599185170 2599416751 1097
155 iso_pu_bacteria 2838035591 2838036864 1097
156 iso_pu_bacteria 2838074704 2838076057 1097
157 iso_pu_bacteria 2838661181 2838662095 1097
158 iso_pu_bacteria 2896384573 2896388690 1097
159 iso_pu_bacteria 2933016740 2933019373 1097

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16657

Malt_amylase_C

Maltogenic Amylase, C-terminal domain

487

565

0.99

PF18085

Mak_N_cap

Maltokinase N-terminal cap domain

609

699

0.87

PF00128

Alpha-amylase

Alpha amylase, catalytic domain

387

431

0.83

PF00128

Alpha-amylase

Alpha amylase, catalytic domain

74

376

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4lxf-assembly1.cif.gz_B-2 crystal structure of m. tuberculosis tres 0.9059 15 554
5x7u-assembly1.cif.gz_A trehalose synthase from thermobaculum terrenum 0.9051 15 554
5ykb-assembly1.cif.gz_D the n253f mutant structure of trehalose synthase from deinococcus radiodurans reveals an open active-site conformation 0.8952 18 552
5ykb-assembly2.cif.gz_B the n253f mutant structure of trehalose synthase from deinococcus radiodurans reveals an open active-site conformation 0.8935 18 553
4wf7-assembly2.cif.gz_C crystal structures of trehalose synthase from deinococcus radiodurans reveal that a closed conformation is involved in the intramolecular isomerization catalysis 0.893 16 554
ID Description Score Start End Superfamily
5jy7A02 Alpha Beta;Alpha-Beta Complex;Oligo-1,6-glucosidase; domain 2;Oligo-1,6-glucosidase; Domain 2 0.965 116 186 3.90.400.10
4tvuA03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9568 473 553 2.60.40.1180
4lxfB03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9551 473 554 2.60.40.1180
5jy7A02 Alpha Beta;Alpha-Beta Complex;Oligo-1,6-glucosidase; domain 2;Oligo-1,6-glucosidase; Domain 2 0.9516 116 186 3.90.400.10
af_P9WQ19_501_601_2.60.40.1180 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9363 473 559 2.60.40.1180
ID Description Score Start End GO Terms
AF-A0A6B1KVN5-F1-model_v4 Trehalose synthase 0.9929 142 248 GO:0005975
AF-A0A6H9SDD5-F1-model_v4 Alpha-amylase 0.9874 18 187 GO:0005975
AF-A0A2V7CYM1-F1-model_v4 Alpha-amylase 0.9867 14 237 GO:0005975
AF-A0A7X3AM73-F1-model_v4 deleted 0.9857 456 557
AF-A0A536TCB4-F1-model_v4 Alpha-amylase 0.9839 11 128 GO:0005975

Feature Viewer

pLDDT pTM Quality
81.34 0.54 Medium
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Predicted Structure (AlphaFold2)

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