F232004

General Info

Members Datasets Scaffolds Average Seq Length
159 121 132 191

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10000008|Ga0105240_10000008224
Length 224
Sequence MKRAECVVVNKRGFSVHRGEPGILVIFSKKKAVYEVFREYLNSKVALTEEQHEWIRSCSVVKKLRKRQYLLQEGDVWRNHAFVSKGLVRTYSVDEKGMEHVIAFAMENWWTGDRESLLSGKPSRFNIDAIEDSEIVLFEKQKFEAICAEIPAFNDMVNGIIDRSFVALQSRINDSISSAVEERYKNFVEKYPSFAARVPQNMIASYLGITRETLSRIRGKAAKG

Samples

Sample ID Description Type Environment
1 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
2 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
3 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
4 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
5 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
6 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
7 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
8 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
9 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
10 2818991444 Filimonas endophytica 3197 Isolate Unclassified
11 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
12 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
13 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
14 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
15 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
16 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
17 2914759650 Rhizosphaericola mali Isolate Rhizosphere
18 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
19 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
20 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
21 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
22 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
23 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
24 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
25 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
26 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
27 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
28 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
29 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
30 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
31 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
32 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
33 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
34 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
35 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
36 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
41 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
42 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
43 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
44 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
58 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
59 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
62 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
63 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
64 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
70 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
81 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
82 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
83 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
84 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
89 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
90 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
91 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
94 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
95 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
96 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
97 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
98 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
99 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
100 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
101 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
102 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
103 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
104 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
105 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
106 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
107 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
108 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
111 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
116 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
117 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
118 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
119 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
120 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
121 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.02
Metatranscriptomes 0
Isolates 16.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.87
Nodule 3.77
Rhizoplane 0.63
Rhizosphere 59.75
Stem 0
Stem Tuber 0
Unclassified 16.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10017391 3300001989 Bacteria 2594
2 JGI24739J22299_10094350 3300001989 Unclassified 908
3 JGI24737J22298_10003871 3300001990 Bacteria 5262
4 JGI24735J21928_10000008 3300002067 Bacteria 319819
5 JGI25153J46596_10039561 3300003215 Unclassified 1472
6 JGI25153J46596_10053499 3300003215 Unclassified 1142
7 rootH2_10047580 3300003320 Bacteria 23351
8 rootL2_10133711 3300003322 Unclassified 3494
9 rootL2_10150040 3300003322 Bacteria 3546
10 rootL2_10318604 3300003322 Unclassified 1065
11 rootH1_10179487 3300003323 Bacteria 2653
12 Ga0055526_1027429 3300003771 Unclassified 1760
13 Ga0055536_1000038 3300003781 Bacteria 133102
14 Ga0055528_1000491 3300003790 Bacteria 31269
15 Ga0065165_1000124 3300005262 Bacteria 130515
16 Ga0065165_1001027 3300005262 Bacteria 33828
17 Ga0065165_1037446 3300005262 Bacteria 1470
18 Ga0070709_10695106 3300005434 Bacteria 791
19 Ga0068853_100174690 3300005539 Bacteria 1945
20 Ga0068855_100019761 3300005563 Bacteria 8089
21 Ga0068857_100387573 3300005577 Bacteria 1298
22 Ga0075370_10217664 3300006353 Bacteria 1128
23 Ga0099824_1007157 3300006942 Bacteria 14924
24 Ga0079104_1000108 3300006946 Bacteria 122180
25 Ga0099826_10011362 3300006948 Bacteria 6700
26 Ga0105251_10019565 3300009011 Bacteria 3573
27 Ga0105240_10000008 3300009093 Bacteria 618862
28 Ga0105241_10278829 3300009174 Unclassified 1427
29 Ga0105237_10020872 3300009545 Bacteria 6744
30 Ga0105237_10869356 3300009545 Bacteria 908
31 Ga0105239_10041464 3300010375 Bacteria 5044
32 Ga0105239_10101762 3300010375 Unclassified 3178
33 Ga0157373_10000002 3300013100 Bacteria 750094
34 Ga0157371_10003544 3300013102 Bacteria 14078
35 Ga0157371_10045935 3300013102 Bacteria 3107
36 Ga0157370_10000097 3300013104 Bacteria 99144
37 Ga0157370_10000262 3300013104 Bacteria 66893
38 Ga0157370_10000319 3300013104 Bacteria 60498
39 Ga0157370_10001581 3300013104 Bacteria 28174
40 Ga0157370_10005489 3300013104 Bacteria 14219
41 Ga0157369_10001317 3300013105 Bacteria 30822
42 Ga0157369_10002206 3300013105 Bacteria 23455
43 Ga0157374_10000009 3300013296 Bacteria 564330
44 Ga0157378_10266044 3300013297 Bacteria 1647
45 Ga0163162_10002084 3300013306 Bacteria 18782
46 Ga0163162_10005474 3300013306 Bacteria 12273
47 Ga0157372_10006604 3300013307 Bacteria 12343
48 Ga0157372_10066048 3300013307 Unclassified 4064
49 Ga0157372_11264006 3300013307 Bacteria 852
50 Ga0157375_10318720 3300013308 Bacteria 1719
51 Ga0163163_10184725 3300014325 Unclassified 2133
52 Ga0182008_10054061 3300014497 Bacteria 1988
53 Ga0157376_10040353 3300014969 Unclassified 3815
54 Ga0182006_1001838 3300015261 Bacteria 12171
55 Ga0182006_1038074 3300015261 Bacteria 1903
56 Ga0182005_1000357 3300015265 Bacteria 25732
57 Ga0163161_10002354 3300017792 Bacteria 13543
58 Ga0209673_1000014 3300025273 Bacteria 537082
59 Ga0209673_1000018 3300025273 Bacteria 458281
60 Ga0209676_1000201 3300025292 Bacteria 133195
61 Ga0209564_1006489 3300025295 Bacteria 6293
62 Ga0209564_1015101 3300025295 Bacteria 3162
63 Ga0209758_1021106 3300025297 Bacteria 3050
64 Ga0209758_1033510 3300025297 Unclassified 2060
65 Ga0209050_1000177 3300025298 Bacteria 146637
66 Ga0209050_1000203 3300025298 Bacteria 133156
67 Ga0207426_1002181 3300025302 Bacteria 13237
68 Ga0207426_1008061 3300025302 Bacteria 4317
69 Ga0207426_1062199 3300025302 Bacteria 1069
70 Ga0209257_1000001 3300025304 Bacteria 2274655
71 Ga0209257_1001038 3300025304 Bacteria 37003
72 Ga0207713_1096014 3300025735 Bacteria 1032
73 Ga0207647_10040109 3300025904 Bacteria 2950
74 Ga0207654_10205185 3300025911 Bacteria 1300
75 Ga0207695_10000021 3300025913 Bacteria 679399
76 Ga0207671_10179562 3300025914 Unclassified 1647
77 Ga0207667_10066756 3300025949 Bacteria 3749
78 Ga0207639_10148677 3300026041 Bacteria 1960
79 Ga0207678_10045311 3300026067 Bacteria 3804
80 Ga0207674_10382607 3300026116 Bacteria 1360
81 Ga0209281_1000208 3300027111 Bacteria 132254
82 Ga0209489_110467 3300027361 Bacteria 10429
83 Ga0209282_1088065 3300027666 Bacteria 1635
84 Ga0307513_10061008 3300031456 Bacteria 3995
85 Ga0307513_10129349 3300031456 Bacteria 2474
86 Ga0307509_10079659 3300031507 Bacteria 3390
87 Ga0307416_100002223 3300032002 Bacteria 11044
88 Ga0395899_0000220 3300037312 Bacteria 78900
89 Ga0395900_0098696 3300037418 Bacteria 3001
90 Ga0466965_0034958 3300044683 Bacteria 2461
91 Ga0466965_0318749 3300044683 Bacteria 846
92 Ga0466957_0134454 3300044842 Bacteria 1588
93 Ga0466960_0242929 3300044901 Unclassified 998
94 Ga0495627_001600 3300046453 Bacteria 12682
95 Ga0495627_015450 3300046453 Bacteria 2635
96 Ga0495638_0090835 3300046460 Bacteria 1840
97 Ga0495650_0000025 3300046471 Bacteria 486001
98 Ga0495585_0000017 3300046492 Bacteria 164054
99 Ga0495583_0032844 3300046506 Bacteria 2502
100 Ga0495606_0000026 3300046507 Bacteria 259118
101 Ga0495606_0007516 3300046507 Bacteria 9724
102 Ga0495610_0000074 3300046512 Bacteria 120043
103 Ga0495610_0003283 3300046512 Bacteria 12745
104 Ga0495610_0101688 3300046512 Bacteria 1286
105 Ga0495616_0002379 3300046513 Bacteria 12525
106 Ga0495637_0025993 3300046520 Unclassified 2634
107 Ga0495637_0057568 3300046520 Bacteria 1605
108 Ga0495643_0000419 3300046522 Bacteria 55632
109 Ga0495633_0006544 3300046558 Bacteria 6885
110 Ga0495668_0049798 3300046616 Bacteria 2323
111 Ga0495625_0000008 3300046660 Bacteria 536165
112 Ga0495625_0020227 3300046660 Bacteria 5144
113 Ga0495661_0017767 3300046665 Bacteria 4688
114 Ga0495661_0093245 3300046665 Bacteria 1709
115 Ga0495649_0000006 3300046694 Bacteria 542188
116 Ga0495672_0146579 3300047320 Bacteria 1228
117 Ga0495673_0114642 3300047469 Bacteria 1073
118 Ga0496116_0000032 3300048919 Bacteria 419997
119 Ga0496117_0086863 3300048920 Bacteria 2030
120 Ga0496118_0057181 3300048921 Bacteria 2926
121 Ga0496121_0000011 3300048924 Bacteria 792193
122 Ga0496121_0016249 3300048924 Bacteria 7700
123 Ga0496124_0066443 3300048927 Bacteria 3003
124 Ga0496125_0000111 3300048928 Bacteria 191489
125 Ga0496126_0020260 3300048929 Bacteria 6527
126 nmdc:mga07m45_200498_c1 3300050496 Bacteria 1161
127 Ga0500641_0000010 3300053096 Bacteria 171383
128 Ga0500641_0000188 3300053096 Bacteria 23249
129 Ga0500559_0053286 3300053136 Bacteria 1790
130 Ga0500622_0002782 3300053156 Bacteria 12296
131 Ga0500622_0003886 3300053156 Bacteria 9682
132 Ga0500645_027116 3300053730 Bacteria 1739

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003790 Ga0055528_1000491 Ga0055528_100049116 172
2 3300005262 Ga0065165_1000124 Ga0065165_100012492 172
3 3300025273 Ga0209673_1000014 Ga0209673_1000014173 172
4 3300025273 Ga0209673_1000018 Ga0209673_1000018121 172
5 3300025295 Ga0209564_1006489 Ga0209564_10064891 172
6 3300025298 Ga0209050_1000177 Ga0209050_100017741 172
7 3300025302 Ga0207426_1002181 Ga0207426_10021818 172
8 3300025304 Ga0209257_1001038 Ga0209257_10010385 172
9 3300044901 Ga0466960_0242929 Ga0466960_0242929_283_852 175
10 3300048924 Ga0496121_0000011 Ga0496121_0000011_785627_786253 181
11 iso_pu_bacteria 2958512119 2958513190 185
12 iso_pu_bacteria 2818991442 2819575501 186
13 iso_pu_bacteria 2821136567 2821138051 187
14 iso_pu_bacteria 2904467357 2904468846 187
15 iso_pu_bacteria 2519899754 2520881680 188
16 iso_pu_bacteria 2582581281 2585159246 188
17 iso_pu_bacteria 2582581282 2585163616 188
18 iso_pu_bacteria 2643221716 2644640075 188
19 iso_pu_bacteria 2643221725 2644685026 188
20 iso_pu_bacteria 2802428842 2802653948 188
21 iso_pu_bacteria 2816332280 2817416961 188
22 iso_pu_bacteria 2818991444 2819587674 188
23 iso_pu_bacteria 2852623160 2852624427 188
24 iso_pu_bacteria 2884933994 2884936704 188
25 iso_pu_bacteria 2903895155 2903899497 188
26 iso_pu_bacteria 2904555929 2904560064 188
27 iso_pu_bacteria 2914759650 2914759800 188
28 iso_pu_bacteria 2958458903 2958461679 188
29 iso_pu_bacteria 2965320100 2965322189 188
30 iso_pu_bacteria 2977268062 2977269943 188
31 iso_pu_bacteria 8055419101 8055422551 188
32 iso_pu_bacteria 8055592153 8055593765 188
33 3300001989 JGI24739J22299_10094350 JGI24739J22299_100943501 189
34 3300003215 JGI25153J46596_10039561 JGI25153J46596_100395611 189
35 3300003215 JGI25153J46596_10053499 JGI25153J46596_100534991 189
36 3300003322 rootL2_10318604 rootL2_103186041 189
37 3300003771 Ga0055526_1027429 Ga0055526_10274291 189
38 3300006353 Ga0075370_10217664 Ga0075370_102176642 189
39 3300025295 Ga0209564_1015101 Ga0209564_10151011 189
40 3300025297 Ga0209758_1021106 Ga0209758_10211061 189
41 3300025297 Ga0209758_1033510 Ga0209758_10335102 189
42 3300025302 Ga0207426_1062199 Ga0207426_10621991 189
43 3300044683 Ga0466965_0318749 Ga0466965_0318749_58_627 189
44 3300046453 Ga0495627_015450 Ga0495627_015450_557_1126 189
45 iso_pu_bacteria 2599185184 2599476644 189
46 iso_pu_bacteria 2928078545 2928078593 189
47 iso_pu_bacteria 2928147474 2928151730 189
48 iso_pu_bacteria 2932082852 2932084345 189
49 3300015265 Ga0182005_1000357 Ga0182005_100035717 190
50 3300046453 Ga0495627_001600 Ga0495627_001600_2865_3437 190
51 3300005262 Ga0065165_1037446 Ga0065165_10374463 191
52 3300009545 Ga0105237_10869356 Ga0105237_108693562 191
53 3300025302 Ga0207426_1008061 Ga0207426_10080612 191
54 3300031507 Ga0307509_10079659 Ga0307509_100796592 191
55 3300003320 rootH2_10047580 rootH2_1004758018 192
56 3300003323 rootH1_10179487 rootH1_101794872 192
57 3300005262 Ga0065165_1001027 Ga0065165_100102731 192
58 3300006942 Ga0099824_1007157 Ga0099824_100715710 192
59 3300006946 Ga0079104_1000108 Ga0079104_100010840 192
60 3300006948 Ga0099826_10011362 Ga0099826_100113623 192
61 3300009011 Ga0105251_10019565 Ga0105251_100195655 192
62 3300009093 Ga0105240_10000008 Ga0105240_10000008224 192
63 3300009174 Ga0105241_10278829 Ga0105241_102788292 192
64 3300009545 Ga0105237_10020872 Ga0105237_100208726 192
65 3300010375 Ga0105239_10041464 Ga0105239_100414643 192
66 3300010375 Ga0105239_10101762 Ga0105239_101017622 192
67 3300013100 Ga0157373_10000002 Ga0157373_10000002271 192
68 3300013102 Ga0157371_10003544 Ga0157371_1000354410 192
69 3300013104 Ga0157370_10000097 Ga0157370_1000009774 192
70 3300013104 Ga0157370_10000262 Ga0157370_1000026238 192
71 3300013104 Ga0157370_10000319 Ga0157370_1000031925 192
72 3300013104 Ga0157370_10001581 Ga0157370_100015816 192
73 3300013104 Ga0157370_10005489 Ga0157370_100054897 192
74 3300013105 Ga0157369_10001317 Ga0157369_100013178 192
75 3300013105 Ga0157369_10002206 Ga0157369_1000220612 192
76 3300013296 Ga0157374_10000009 Ga0157374_1000000935 192
77 3300013297 Ga0157378_10266044 Ga0157378_102660442 192
78 3300013306 Ga0163162_10005474 Ga0163162_100054744 192
79 3300013307 Ga0157372_10066048 Ga0157372_100660484 192
80 3300013307 Ga0157372_11264006 Ga0157372_112640061 192
81 3300013308 Ga0157375_10318720 Ga0157375_103187202 192
82 3300014325 Ga0163163_10184725 Ga0163163_101847252 192
83 3300014497 Ga0182008_10054061 Ga0182008_100540612 192
84 3300014969 Ga0157376_10040353 Ga0157376_100403532 192
85 3300015261 Ga0182006_1001838 Ga0182006_10018386 192
86 3300015261 Ga0182006_1038074 Ga0182006_10380742 192
87 3300017792 Ga0163161_10002354 Ga0163161_1000235411 192
88 3300025304 Ga0209257_1000001 Ga0209257_1000001530 192
89 3300025735 Ga0207713_1096014 Ga0207713_10960142 192
90 3300025911 Ga0207654_10205185 Ga0207654_102051851 192
91 3300025913 Ga0207695_10000021 Ga0207695_10000021176 192
92 3300025914 Ga0207671_10179562 Ga0207671_101795622 192
93 3300026067 Ga0207678_10045311 Ga0207678_100453113 192
94 3300027111 Ga0209281_1000208 Ga0209281_100020841 192
95 3300027361 Ga0209489_110467 Ga0209489_1104674 192
96 3300027666 Ga0209282_1088065 Ga0209282_10880653 192
97 3300031456 Ga0307513_10061008 Ga0307513_100610085 192
98 3300031456 Ga0307513_10129349 Ga0307513_101293493 192
99 3300032002 Ga0307416_100002223 Ga0307416_1000022239 192
100 3300037312 Ga0395899_0000220 Ga0395899_0000220_47775_48353 192
101 3300037418 Ga0395900_0098696 Ga0395900_0098696_984_1562 192
102 3300044683 Ga0466965_0034958 Ga0466965_0034958_480_1058 192
103 3300044842 Ga0466957_0134454 Ga0466957_0134454_947_1525 192
104 3300046507 Ga0495606_0007516 Ga0495606_0007516_198_776 192
105 3300046512 Ga0495610_0000074 Ga0495610_0000074_82427_83005 192
106 3300046520 Ga0495637_0025993 Ga0495637_0025993_1913_2491 192
107 3300046522 Ga0495643_0000419 Ga0495643_0000419_8860_9438 192
108 3300046616 Ga0495668_0049798 Ga0495668_0049798_527_1105 192
109 3300046660 Ga0495625_0020227 Ga0495625_0020227_3892_4470 192
110 3300047320 Ga0495672_0146579 Ga0495672_0146579_575_1186 192
111 3300048919 Ga0496116_0000032 Ga0496116_0000032_388017_388595 192
112 3300048920 Ga0496117_0086863 Ga0496117_0086863_789_1367 192
113 3300048921 Ga0496118_0057181 Ga0496118_0057181_1168_1746 192
114 3300048924 Ga0496121_0016249 Ga0496121_0016249_4745_5323 192
115 3300048927 Ga0496124_0066443 Ga0496124_0066443_929_1507 192
116 3300048928 Ga0496125_0000111 Ga0496125_0000111_57758_58336 192
117 3300048929 Ga0496126_0020260 Ga0496126_0020260_1132_1710 192
118 3300050496 nmdc:mga07m45_200498_c1 nmdc:mga07m45_200498_c1_312_890 192
119 3300053096 Ga0500641_0000010 Ga0500641_0000010_90468_91046 192
120 3300053096 Ga0500641_0000188 Ga0500641_0000188_645_1223 192
121 3300053136 Ga0500559_0053286 Ga0500559_0053286_874_1452 192
122 3300053156 Ga0500622_0002782 Ga0500622_0002782_10559_11137 192
123 3300053156 Ga0500622_0003886 Ga0500622_0003886_1122_1700 192
124 3300053730 Ga0500645_027116 Ga0500645_027116_948_1526 192
125 iso_pu_bacteria 2958512119 2958514123 192
126 3300001989 JGI24739J22299_10017391 JGI24739J22299_100173912 193
127 3300001990 JGI24737J22298_10003871 JGI24737J22298_100038717 193
128 3300002067 JGI24735J21928_10000008 JGI24735J21928_10000008169 193
129 3300003322 rootL2_10133711 rootL2_101337112 193
130 3300003322 rootL2_10150040 rootL2_101500402 193
131 3300003781 Ga0055536_1000038 Ga0055536_100003868 193
132 3300005434 Ga0070709_10695106 Ga0070709_106951061 193
133 3300005539 Ga0068853_100174690 Ga0068853_1001746902 193
134 3300005563 Ga0068855_100019761 Ga0068855_1000197613 193
135 3300005577 Ga0068857_100387573 Ga0068857_1003875732 193
136 3300013102 Ga0157371_10045935 Ga0157371_100459354 193
137 3300013306 Ga0163162_10002084 Ga0163162_1000208416 193
138 3300013307 Ga0157372_10006604 Ga0157372_100066047 193
139 3300025292 Ga0209676_1000201 Ga0209676_100020141 193
140 3300025298 Ga0209050_1000203 Ga0209050_100020341 193
141 3300025904 Ga0207647_10040109 Ga0207647_100401092 193
142 3300025949 Ga0207667_10066756 Ga0207667_100667563 193
143 3300026041 Ga0207639_10148677 Ga0207639_101486773 193
144 3300026116 Ga0207674_10382607 Ga0207674_103826072 193
145 3300046460 Ga0495638_0090835 Ga0495638_0090835_561_1142 193
146 3300046471 Ga0495650_0000025 Ga0495650_0000025_58926_59507 193
147 3300046492 Ga0495585_0000017 Ga0495585_0000017_24076_24657 193
148 3300046506 Ga0495583_0032844 Ga0495583_0032844_1598_2179 193
149 3300046507 Ga0495606_0000026 Ga0495606_0000026_69634_70215 193
150 3300046512 Ga0495610_0003283 Ga0495610_0003283_12102_12683 193
151 3300046512 Ga0495610_0101688 Ga0495610_0101688_643_1224 193
152 3300046513 Ga0495616_0002379 Ga0495616_0002379_9728_10309 193
153 3300046520 Ga0495637_0057568 Ga0495637_0057568_590_1171 193
154 3300046558 Ga0495633_0006544 Ga0495633_0006544_2441_3022 193
155 3300046660 Ga0495625_0000008 Ga0495625_0000008_243756_244337 193
156 3300046665 Ga0495661_0017767 Ga0495661_0017767_35_616 193
157 3300046665 Ga0495661_0093245 Ga0495661_0093245_621_1202 193
158 3300046694 Ga0495649_0000006 Ga0495649_0000006_469263_469844 193
159 3300047469 Ga0495673_0114642 Ga0495673_0114642_455_1036 193

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00027

cNMP_binding

Cyclic nucleotide-binding domain

61

149

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dn7-assembly1.cif.gz_A cyclic nucleotide binding regulatory protein from cytophaga hutchinsonii. 0.9496 1 146
3dn7-assembly1.cif.gz_A cyclic nucleotide binding regulatory protein from cytophaga hutchinsonii. 0.9433 1 146
5cvr-assembly1.cif.gz_A-2 crystal structure of fnr of a. fischeri in a partially degraded form 0.8954 28 192
3i54-assembly2.cif.gz_C crystal structure of mtbcrp in complex with camp 0.8835 21 192
5e44-assembly1.cif.gz_A-2 crystal structure of holo-fnr of a. fischeri 0.8789 8 192
ID Description Score Start End Superfamily
3dn7A00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9614 7 137 2.60.120.10
5cvrA01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9103 28 147 2.60.120.10
3dn7A00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8706 7 137 2.60.120.10
5cvrA01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8689 28 147 2.60.120.10
3i54C01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8666 21 147 2.60.120.10
ID Description Score Start End GO Terms
AF-A0A1M7ERA0-F1-model_v4 cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases 0.9982 2 193
AF-A0A847RLH4-F1-model_v4 Crp/Fnr family transcriptional regulator 0.9975 1 192
AF-A0A7K0F802-F1-model_v4 Cyclic nucleotide-binding domain-containing protein 0.997 1 191
AF-A0A1M5KL92-F1-model_v4 cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases 0.9946 1 191 GO:0016301
AF-A0A521FFH0-F1-model_v4 cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases 0.9927 2 188

Feature Viewer

pLDDT pTM Quality
95.76 0.88 High
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Predicted Structure (AlphaFold2)

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