F230013

General Info

Members Datasets Scaffolds Average Seq Length
158 111 146 317

Family's Representative Sequence

Representative Sequence 3300031344|Ga0265316_10193970|Ga0265316_101939701
Length 378
Sequence MRTSHTTRMAITILIETMYGFTRHHRVGLGTGCRVTIIRGKFTIGTTNIGTMTNTMTDNAYVDRPISRKVVIVGAGDVGASFAYALLQSGSAECIVLIDSRKELAEGQALDLAHGLPFVPTTIVRAGSPDDYDDAAVIVITAGSRQKPGESRLDLLKRNALIIGQIVEVIKAHESPATIVVASNPVDVLTFIALKQTGWPRNRIYGSGTVLDSARFRHLLSQHCGVDVRNVHAYILGEHGDSEVAAWSMTNLAGMAMDDYCPACQKCGDWNKERIRIVEEVRDSAYHIIEAKGSTCYAIGLALVRIVEAVLRNEHSIMTVSTFLEGEYGLKDVCLSVPCIVSKSGVERVIEGKLSDEELQALKESASIIKENTRRLSA

Samples

Sample ID Description Type Environment
1 2643221546 Microbacterium sp. Root53 Isolate Unclassified
2 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
3 2739367653 Kocuria sp. OV113 Isolate Unclassified
4 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
5 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
6 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
7 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
8 2857727296 Kocuria sp. R-72562 Isolate Unclassified
9 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
10 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
11 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
12 2920879853 Kocuria salina CV6 Isolate Unclassified
13 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
51 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
52 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
53 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
54 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
55 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
58 3300031686 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA6 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
59 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
62 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
63 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
64 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
70 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
71 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
72 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
73 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
74 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
75 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
76 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
77 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
78 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
79 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
80 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
81 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
82 3300042118 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 Metagenome Rhizosphere
83 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
84 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
85 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
86 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
87 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
88 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
89 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
92 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
93 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
94 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
95 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
96 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
110 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
111 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.77
Metatranscriptomes 0.63
Isolates 7.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.63
Nodule 0
Rhizoplane 17.09
Rhizosphere 72.15
Stem 0
Stem Tuber 0
Unclassified 10.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10030479 3300003203 Bacteria 2029
2 Ga0070683_100097356 3300005329 Bacteria 2768
3 Ga0070683_100440786 3300005329 Bacteria 1243
4 Ga0068868_100109453 3300005338 Bacteria 2244
5 Ga0070667_100021155 3300005367 Bacteria 5405
6 Ga0070667_100098442 3300005367 Bacteria 2524
7 Ga0070667_100122628 3300005367 Bacteria 2262
8 Ga0070708_100142021 3300005445 Bacteria 2227
9 Ga0070672_100316120 3300005543 Bacteria 1326
10 Ga0068855_100134035 3300005563 Bacteria 2827
11 Ga0070664_100276017 3300005564 Bacteria 1515
12 Ga0068860_100030013 3300005843 Bacteria 5229
13 Ga0081539_10004373 3300005985 Bacteria 15725
14 Ga0075432_10003350 3300006058 Bacteria 5414
15 Ga0097621_100147568 3300006237 Bacteria 2015
16 Ga0075431_100121591 3300006847 Bacteria 2694
17 Ga0105240_10265626 3300009093 Bacteria 1978
18 Ga0111539_10130980 3300009094 Bacteria 2937
19 Ga0105245_10141653 3300009098 Bacteria 2265
20 Ga0105245_10177337 3300009098 Bacteria 2033
21 Ga0105245_10319709 3300009098 Bacteria 1528
22 Ga0105243_10134947 3300009148 Bacteria 2098
23 Ga0105241_10241048 3300009174 Bacteria 1528
24 Ga0105242_10647913 3300009176 Bacteria 1027
25 Ga0105248_10590522 3300009177 Bacteria 1253
26 Ga0105238_10288655 3300009551 Bacteria 1622
27 Ga0105239_10169173 3300010375 Bacteria 2444
28 Ga0157378_10437248 3300013297 Bacteria 1296
29 Ga0157372_10252841 3300013307 Bacteria 2046
30 Ga0157375_10153677 3300013308 Bacteria 2438
31 Ga0163163_10044163 3300014325 Bacteria 4371
32 Ga0157376_10494981 3300014969 Bacteria 1200
33 Ga0207645_10068174 3300025907 Bacteria 2274
34 Ga0207654_10175260 3300025911 Bacteria 1395
35 Ga0207649_10202528 3300025920 Bacteria 1403
36 Ga0207694_10361469 3300025924 Bacteria 1203
37 Ga0207691_10044781 3300025940 Bacteria 4071
38 Ga0207691_10336964 3300025940 Bacteria 1291
39 Ga0207661_10372671 3300025944 Bacteria 1291
40 Ga0207667_10074918 3300025949 Bacteria 3515
41 Ga0207658_10019690 3300025986 Unclassified 4668
42 Ga0207658_10167020 3300025986 Bacteria 1809
43 Ga0207676_10176669 3300026095 Bacteria 1866
44 Ga0207676_10391236 3300026095 Bacteria 1297
45 Ga0207674_10021139 3300026116 Bacteria 7015
46 Ga0265318_10086489 3300028577 Unclassified 1155
47 Ga0265323_10019994 3300028653 Unclassified 2582
48 Ga0265323_10063242 3300028653 Unclassified 1282
49 Ga0265338_10014833 3300028800 Bacteria 8621
50 Ga0265330_10001273 3300031235 Bacteria 14761
51 Ga0265332_10102878 3300031238 Unclassified 1204
52 Ga0265329_10009452 3300031242 Unclassified 3640
53 Ga0265316_10000174 3300031344 Bacteria 72573
54 Ga0265316_10002325 3300031344 Bacteria 19879
55 Ga0265316_10193970 3300031344 Bacteria 1508
56 Ga0265316_10198208 3300031344 Bacteria 1489
57 Ga0307408_100039252 3300031548 Bacteria 3345
58 Ga0310119_112856 3300031686 Bacteria 975
59 Ga0316579_10044210 3300031691 Bacteria 2074
60 Ga0265342_10000114 3300031712 Bacteria 88429
61 Ga0316576_10279860 3300031727 Bacteria 1249
62 Ga0316578_10005188 3300031728 Bacteria 6280
63 Ga0316577_10026730 3300031733 Bacteria 3215
64 Ga0307407_10036913 3300031903 Bacteria 2696
65 Ga0307409_100030284 3300031995 Bacteria 3886
66 Ga0307416_100166570 3300032002 Bacteria 2045
67 Ga0307415_100317341 3300032126 Bacteria 1298
68 Ga0373937_0029970 3300036401 Bacteria 4928
69 Ga0373937_0090469 3300036401 Bacteria 2834
70 Ga0316582_0012222 3300036647 Bacteria 4782
71 Ga0316582_0012259 3300036647 Bacteria 4774
72 Ga0316582_0040803 3300036647 Bacteria 2899
73 Ga0316582_0054935 3300036647 Bacteria 2537
74 Ga0316584_0039662 3300036712 Bacteria 3506
75 Ga0316584_0180718 3300036712 Bacteria 1562
76 Ga0316584_0231551 3300036712 Bacteria 1354
77 Ga0451789_0607750 3300041443 Bacteria 2090
78 Ga0451793_0662789 3300041452 Bacteria 8838
79 Ga0451795_0893383 3300041456 Bacteria 2138
80 Ga0451837_1304653 3300041494 Bacteria 1397
81 Ga0451839_0646100 3300041496 Bacteria 2353
82 Ga0451843_0474178 3300041509 Bacteria 2153
83 Ga0451853_0504645 3300041512 Bacteria 3583
84 Ga0439443_007484 3300042003 Bacteria 1520
85 Ga0439448_0004648 3300042005 Bacteria 3883
86 Ga0439450_004845 3300042008 Bacteria 2328
87 Ga0439455_0002186 3300042012 Bacteria 3500
88 Ga0450914_001162 3300042118 Bacteria 1567
89 Ga0439444_0001298 3300042437 Bacteria 3191
90 Ga0439459_0002090 3300042438 Bacteria 3048
91 Ga0439464_0019722 3300042439 Bacteria 1842
92 Ga0439460_0012769 3300042461 Bacteria 2185
93 Ga0451577_0090769 3300042876 Bacteria 2727
94 Ga0453683_0051401 3300044673 Bacteria 2582
95 Ga0453684_0000099 3300044712 Bacteria 375208
96 Ga0453684_0000106 3300044712 Bacteria 364365
97 Ga0453684_0014601 3300044712 Bacteria 12539
98 Ga0453684_0016508 3300044712 Bacteria 11532
99 Ga0453684_0043204 3300044712 Bacteria 6062
100 Ga0453684_0104187 3300044712 Unclassified 3464
101 Ga0453684_0105933 3300044712 Bacteria 3428
102 Ga0453684_0282729 3300044712 Bacteria 1892
103 Ga0453684_0301842 3300044712 Bacteria 1820
104 Ga0453684_0427997 3300044712 Unclassified 1477
105 Ga0451576_0000242 3300045051 Bacteria 133680
106 Ga0451576_0004888 3300045051 Bacteria 17124
107 Ga0451576_0011181 3300045051 Bacteria 10230
108 Ga0451576_0137313 3300045051 Bacteria 2550
109 Ga0451576_0530672 3300045051 Bacteria 1236
110 Ga0495629_0167424 3300046459 Bacteria 1526
111 Ga0495608_0030194 3300046511 Bacteria 3672
112 Ga0495608_0066182 3300046511 Bacteria 2366
113 Ga0495630_0000608 3300046517 Bacteria 25924
114 Ga0495665_0043249 3300046531 Bacteria 2396
115 Ga0495635_0142766 3300046663 Bacteria 1630
116 Ga0495635_0163042 3300046663 Bacteria 1517
117 Ga0495624_0004652 3300046690 Bacteria 9999
118 Ga0495674_0259296 3300047319 Bacteria 1428
119 Ga0495684_0000936 3300047471 Bacteria 23712
120 Ga0495684_0019258 3300047471 Bacteria 5254
121 Ga0496102_0050678 3300048905 Bacteria 3781
122 Ga0496104_0012151 3300048907 Bacteria 7734
123 Ga0496104_0018476 3300048907 Bacteria 6361
124 Ga0496105_0001441 3300048908 Bacteria 16747
125 Ga0496108_0006137 3300048911 Bacteria 9719
126 Ga0496108_0018919 3300048911 Bacteria 5648
127 Ga0496108_0031961 3300048911 Bacteria 4368
128 Ga0496108_0215907 3300048911 Bacteria 1666
129 Ga0496109_0010908 3300048912 Bacteria 7783
130 Ga0496109_0017365 3300048912 Bacteria 6305
131 Ga0496109_0071086 3300048912 Bacteria 3194
132 Ga0496110_0015805 3300048913 Bacteria 6292
133 Ga0496110_0069080 3300048913 Bacteria 3127
134 Ga0496110_0162963 3300048913 Bacteria 2022
135 Ga0496111_0001203 3300048914 Bacteria 14439
136 Ga0496111_0016538 3300048914 Bacteria 5084
137 Ga0496112_0552866 3300048915 Bacteria 1085
138 Ga0496113_0018491 3300048916 Bacteria 4855
139 Ga0496113_0048423 3300048916 Bacteria 3162
140 Ga0496114_0007126 3300048917 Bacteria 8819
141 Ga0496114_0017515 3300048917 Bacteria 5784
142 Ga0496114_0281775 3300048917 Bacteria 1466
143 Ga0496114_0421554 3300048917 Bacteria 1182
144 Ga0496115_0217868 3300048918 Bacteria 1575
145 Ga0496120_0031521 3300048923 Bacteria 3209
146 nmdc:mga0sz30_2909_c1 3300050516 Bacteria 6136

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009093 Ga0105240_10265626 Ga0105240_102656263 299
2 3300031686 Ga0310119_112856 Ga0310119_1128561 305
3 3300013308 Ga0157375_10153677 Ga0157375_101536772 307
4 3300042003 Ga0439443_007484 Ga0439443_007484_119_1078 307
5 3300042005 Ga0439448_0004648 Ga0439448_0004648_2466_3425 307
6 3300042008 Ga0439450_004845 Ga0439450_004845_505_1464 307
7 3300042012 Ga0439455_0002186 Ga0439455_0002186_426_1385 307
8 3300042118 Ga0450914_001162 Ga0450914_001162_70_1029 307
9 3300042437 Ga0439444_0001298 Ga0439444_0001298_1991_2950 307
10 3300042438 Ga0439459_0002090 Ga0439459_0002090_992_2077 307
11 3300042439 Ga0439464_0019722 Ga0439464_0019722_19_978 307
12 3300042461 Ga0439460_0012769 Ga0439460_0012769_301_1260 307
13 3300044712 Ga0453684_0043204 Ga0453684_0043204_1957_2880 307
14 3300044712 Ga0453684_0104187 Ga0453684_0104187_24_962 307
15 3300048911 Ga0496108_0215907 Ga0496108_0215907_352_1311 307
16 3300048917 Ga0496114_0421554 Ga0496114_0421554_94_1053 307
17 3300009098 Ga0105245_10177337 Ga0105245_101773372 308
18 3300014325 Ga0163163_10044163 Ga0163163_100441633 308
19 3300026095 Ga0207676_10176669 Ga0207676_101766692 308
20 3300041443 Ga0451789_0607750 Ga0451789_0607750_13_972 308
21 3300041452 Ga0451793_0662789 Ga0451793_0662789_5268_6251 308
22 3300041456 Ga0451795_0893383 Ga0451795_0893383_876_1859 308
23 3300041494 Ga0451837_1304653 Ga0451837_1304653_358_1341 308
24 3300041496 Ga0451839_0646100 Ga0451839_0646100_443_1426 308
25 3300041509 Ga0451843_0474178 Ga0451843_0474178_921_1904 308
26 3300041512 Ga0451853_0504645 Ga0451853_0504645_769_1752 308
27 3300046459 Ga0495629_0167424 Ga0495629_0167424_391_1350 308
28 3300048907 Ga0496104_0012151 Ga0496104_0012151_1728_2687 308
29 3300048908 Ga0496105_0001441 Ga0496105_0001441_497_1456 308
30 3300048911 Ga0496108_0006137 Ga0496108_0006137_2405_3364 308
31 3300048912 Ga0496109_0017365 Ga0496109_0017365_350_1309 308
32 3300048913 Ga0496110_0069080 Ga0496110_0069080_1527_2486 308
33 3300048914 Ga0496111_0016538 Ga0496111_0016538_3830_4789 308
34 3300048916 Ga0496113_0018491 Ga0496113_0018491_3389_4348 308
35 3300048917 Ga0496114_0007126 Ga0496114_0007126_2540_3499 308
36 3300048917 Ga0496114_0017515 Ga0496114_0017515_4150_5109 308
37 3300044712 Ga0453684_0427997 Ga0453684_0427997_443_1375 309
38 3300046663 Ga0495635_0142766 Ga0495635_0142766_12_941 309
39 3300009148 Ga0105243_10134947 Ga0105243_101349471 311
40 iso_pu_bacteria 2643221635 2644199455 311
41 iso_pu_bacteria 2848551377 2848553709 311
42 3300005367 Ga0070667_100122628 Ga0070667_1001226281 312
43 3300005329 Ga0070683_100440786 Ga0070683_1004407862 313
44 3300005563 Ga0068855_100134035 Ga0068855_1001340352 313
45 3300006847 Ga0075431_100121591 Ga0075431_1001215911 313
46 3300009174 Ga0105241_10241048 Ga0105241_102410482 313
47 3300010375 Ga0105239_10169173 Ga0105239_101691732 313
48 3300025911 Ga0207654_10175260 Ga0207654_101752602 313
49 3300025944 Ga0207661_10372671 Ga0207661_103726712 313
50 3300025949 Ga0207667_10074918 Ga0207667_100749182 313
51 3300026116 Ga0207674_10021139 Ga0207674_100211395 313
52 iso_pu_bacteria 2643221546 2643754311 313
53 3300005367 Ga0070667_100021155 Ga0070667_1000211554 314
54 3300005843 Ga0068860_100030013 Ga0068860_1000300134 314
55 3300025986 Ga0207658_10019690 Ga0207658_100196905 314
56 iso_pu_bacteria 2887443736 2887447527 314
57 3300028577 Ga0265318_10086489 Ga0265318_100864892 315
58 3300028653 Ga0265323_10019994 Ga0265323_100199942 315
59 3300028653 Ga0265323_10063242 Ga0265323_100632421 315
60 3300028800 Ga0265338_10014833 Ga0265338_100148336 315
61 3300031235 Ga0265330_10001273 Ga0265330_100012737 315
62 3300031238 Ga0265332_10102878 Ga0265332_101028782 315
63 3300031242 Ga0265329_10009452 Ga0265329_100094523 315
64 3300031344 Ga0265316_10000174 Ga0265316_1000017431 315
65 3300031344 Ga0265316_10002325 Ga0265316_100023253 315
66 3300031344 Ga0265316_10198208 Ga0265316_101982081 315
67 3300031712 Ga0265342_10000114 Ga0265342_1000011443 315
68 3300036647 Ga0316582_0012259 Ga0316582_0012259_3338_4285 315
69 3300042876 Ga0451577_0090769 Ga0451577_0090769_1237_2187 315
70 3300044712 Ga0453684_0000099 Ga0453684_0000099_257470_258420 315
71 3300005329 Ga0070683_100097356 Ga0070683_1000973563 316
72 3300005445 Ga0070708_100142021 Ga0070708_1001420212 316
73 3300009094 Ga0111539_10130980 Ga0111539_101309802 316
74 3300013307 Ga0157372_10252841 Ga0157372_102528412 316
75 3300031548 Ga0307408_100039252 Ga0307408_1000392524 316
76 3300036401 Ga0373937_0090469 Ga0373937_0090469_223_1173 316
77 3300046511 Ga0495608_0030194 Ga0495608_0030194_1036_1986 316
78 3300046517 Ga0495630_0000608 Ga0495630_0000608_13011_13961 316
79 3300046531 Ga0495665_0043249 Ga0495665_0043249_1419_2369 316
80 3300046690 Ga0495624_0004652 Ga0495624_0004652_3735_4685 316
81 3300047319 Ga0495674_0259296 Ga0495674_0259296_276_1226 316
82 3300047471 Ga0495684_0000936 Ga0495684_0000936_12030_12980 316
83 3300005338 Ga0068868_100109453 Ga0068868_1001094532 317
84 3300005367 Ga0070667_100098442 Ga0070667_1000984421 317
85 3300005543 Ga0070672_100316120 Ga0070672_1003161202 317
86 3300005564 Ga0070664_100276017 Ga0070664_1002760172 317
87 3300006237 Ga0097621_100147568 Ga0097621_1001475683 317
88 3300009177 Ga0105248_10590522 Ga0105248_105905222 317
89 3300013297 Ga0157378_10437248 Ga0157378_104372482 317
90 3300025920 Ga0207649_10202528 Ga0207649_102025282 317
91 3300025940 Ga0207691_10044781 Ga0207691_100447814 317
92 3300025940 Ga0207691_10336964 Ga0207691_103369641 317
93 3300025986 Ga0207658_10167020 Ga0207658_101670202 317
94 3300026095 Ga0207676_10391236 Ga0207676_103912361 317
95 3300036401 Ga0373937_0029970 Ga0373937_0029970_2369_3322 317
96 3300044673 Ga0453683_0051401 Ga0453683_0051401_901_1869 317
97 3300044712 Ga0453684_0000106 Ga0453684_0000106_303394_304362 317
98 3300044712 Ga0453684_0014601 Ga0453684_0014601_9506_10474 317
99 3300044712 Ga0453684_0016508 Ga0453684_0016508_2892_3860 317
100 3300044712 Ga0453684_0105933 Ga0453684_0105933_1538_2500 317
101 3300044712 Ga0453684_0282729 Ga0453684_0282729_463_1431 317
102 3300045051 Ga0451576_0000242 Ga0451576_0000242_24960_25928 317
103 3300045051 Ga0451576_0004888 Ga0451576_0004888_3050_4024 317
104 3300045051 Ga0451576_0011181 Ga0451576_0011181_769_1731 317
105 3300045051 Ga0451576_0137313 Ga0451576_0137313_1448_2416 317
106 3300045051 Ga0451576_0530672 Ga0451576_0530672_98_1066 317
107 3300046663 Ga0495635_0163042 Ga0495635_0163042_305_1258 317
108 3300047471 Ga0495684_0019258 Ga0495684_0019258_2207_3160 317
109 3300048917 Ga0496114_0281775 Ga0496114_0281775_292_1245 317
110 3300009098 Ga0105245_10141653 Ga0105245_101416532 318
111 3300009551 Ga0105238_10288655 Ga0105238_102886552 318
112 3300025924 Ga0207694_10361469 Ga0207694_103614691 318
113 3300031691 Ga0316579_10044210 Ga0316579_100442101 318
114 3300031727 Ga0316576_10279860 Ga0316576_102798601 318
115 3300031728 Ga0316578_10005188 Ga0316578_100051882 318
116 3300031733 Ga0316577_10026730 Ga0316577_100267302 318
117 3300036647 Ga0316582_0012222 Ga0316582_0012222_3339_4298 318
118 3300036647 Ga0316582_0040803 Ga0316582_0040803_1308_2276 318
119 3300036647 Ga0316582_0054935 Ga0316582_0054935_111_1103 318
120 3300036712 Ga0316584_0039662 Ga0316584_0039662_572_1540 318
121 3300036712 Ga0316584_0180718 Ga0316584_0180718_520_1485 318
122 3300036712 Ga0316584_0231551 Ga0316584_0231551_349_1317 318
123 3300048911 Ga0496108_0031961 Ga0496108_0031961_1640_2596 318
124 3300048912 Ga0496109_0071086 Ga0496109_0071086_413_1369 318
125 3300048913 Ga0496110_0162963 Ga0496110_0162963_741_1697 318
126 3300048915 Ga0496112_0552866 Ga0496112_0552866_18_974 318
127 3300048923 Ga0496120_0031521 Ga0496120_0031521_1325_2284 318
128 iso_pu_bacteria 2739367653 2739603075 318
129 iso_pu_bacteria 2816332305 2817508393 318
130 iso_pu_bacteria 2857727296 2857729402 318
131 iso_pu_bacteria 2920879853 2920882913 318
132 3300006058 Ga0075432_10003350 Ga0075432_100033502 319
133 3300009098 Ga0105245_10319709 Ga0105245_103197091 319
134 3300009176 Ga0105242_10647913 Ga0105242_106479131 319
135 3300014969 Ga0157376_10494981 Ga0157376_104949812 319
136 3300025907 Ga0207645_10068174 Ga0207645_100681742 319
137 3300031344 Ga0265316_10193970 Ga0265316_101939701 319
138 3300031903 Ga0307407_10036913 Ga0307407_100369132 319
139 3300031995 Ga0307409_100030284 Ga0307409_1000302844 319
140 3300032002 Ga0307416_100166570 Ga0307416_1001665702 319
141 3300032126 Ga0307415_100317341 Ga0307415_1003173412 319
142 3300044712 Ga0453684_0301842 Ga0453684_0301842_227_1243 319
143 3300046511 Ga0495608_0066182 Ga0495608_0066182_1394_2353 319
144 3300048905 Ga0496102_0050678 Ga0496102_0050678_512_1471 319
145 3300048907 Ga0496104_0018476 Ga0496104_0018476_3018_3977 319
146 3300048911 Ga0496108_0018919 Ga0496108_0018919_1269_2228 319
147 3300048912 Ga0496109_0010908 Ga0496109_0010908_3301_4260 319
148 3300048913 Ga0496110_0015805 Ga0496110_0015805_385_1344 319
149 3300048914 Ga0496111_0001203 Ga0496111_0001203_6078_7037 319
150 3300048916 Ga0496113_0048423 Ga0496113_0048423_1398_2357 319
151 3300048918 Ga0496115_0217868 Ga0496115_0217868_371_1330 319
152 3300050516 nmdc:mga0sz30_2909_c1 nmdc:mga0sz30_2909_c1_3329_4288 319
153 iso_pu_bacteria 2857479173 2857481326 319
154 iso_pu_bacteria 2857632687 2857634756 319
155 iso_pu_bacteria 2870801768 2870804002 319
156 iso_pu_bacteria 2870804320 2870805887 319
157 3300003203 JGI25406J46586_10030479 JGI25406J46586_100304792 320
158 3300005985 Ga0081539_10004373 Ga0081539_100043735 320

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00056

Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

68

206

0.98

PF02866

Ldh_1_C

lactate/malate dehydrogenase, alpha/beta C-terminal domain

209

378

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ldb-assembly1.cif.gz_A structure determination and refinement of bacillus stearothermophilus lactate dehydrogenase 0.974 10 317
2ldb-assembly1.cif.gz_A structure determination and refinement of bacillus stearothermophilus lactate dehydrogenase 0.9732 10 317
4a73-assembly1.cif.gz_D single point mutant of thermus thermophilus lactate dehydrogenase 0.9713 11 320
6h9s-assembly1.cif.gz_A-2 crystal dimeric structure of petrotoga mobilis lactate dehydrogenase with nadh 0.971 11 317
1lth-assembly2.cif.gz_R t and r states in the crystals of bacterial l-lactate dehydrogenase reveal the mechanism for allosteric control 0.9694 10 320
ID Description Score Start End Superfamily
6h9sA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9742 11 151 3.40.50.720
af_A1Z9F8_47_191_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9712 9 151 3.40.50.720
6h9sA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9602 11 151 3.40.50.720
4plhC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9594 9 149 3.40.50.720
3vkvC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9562 8 151 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2N9M4R2-F1-model_v4 L-lactate dehydrogenase (EC 1.1.1.27) 1.004 11 88 GO:0004459
GO:0006089
GO:0006090
AF-A0A2N9LJ54-F1-model_v4 L-lactate dehydrogenase (EC 1.1.1.27) 0.9955 10 125 GO:0004459
GO:0006089
GO:0006090
AF-W4TZ55-F1-model_v4 deleted 0.9913 9 149
AF-A0A6I3DT96-F1-model_v4 deleted 0.9906 8 159
AF-B9V4F4-F1-model_v4 Lactate dehydrogenase-like protein (EC 1.1.1.27) 0.9894 12 195 GO:0004459
GO:0006089
GO:0006090

Feature Viewer

pLDDT pTM Quality
93.78 0.92 High
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Predicted Structure (AlphaFold2)

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