F229316

General Info

Members Datasets Scaffolds Average Seq Length
158 128 316 153

Family's Representative Sequence

Representative Sequence 3300005937|Ga0081455_10076629|Ga0081455_100766293
Length 174
Sequence MALDATDWALLAELQRNARASMSELARTVAMSASAVTERVRRLEESGVLRGYRAEVDLARVGYPILAFVRLRYPHGNYKPLHDLVAKRTEILEAHHVTGDDCFVLKVAARSMPHLEEVVGAISGLGGVSTSIVYSTTFTGRVLDDRGPGRQNGAAPSGRPKPDQGRSNGGGTSS

Samples

Sample ID Description Type Environment
1 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
24 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
25 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
35 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
56 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
57 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
58 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
59 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
62 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
63 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
64 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
65 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
66 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
67 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
68 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
71 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
72 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
73 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
74 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
75 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
76 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
77 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
80 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
81 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
82 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
83 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
84 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
85 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
86 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
89 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
90 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
98 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
102 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
103 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
104 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
105 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
106 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
107 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
108 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
109 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
110 2643221670 Streptomyces sp. Root431 Isolate Unclassified
111 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
112 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
113 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
114 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
115 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
116 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
117 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
118 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
119 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
120 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
121 2891562705 Microbispora tritici MT50 Isolate Unclassified
122 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
123 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
124 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
125 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
126 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
127 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
128 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.08
Metatranscriptomes 0
Isolates 13.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.16
Nodule 0
Rhizoplane 5.06
Rhizosphere 70.25
Stem 0
Stem Tuber 0
Unclassified 1.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081455_10076629 3300005937 Bacteria 2754
2 JGI24740J21852_10013002 3300001979 Bacteria 3122
3 JGI24739J22299_10071256 3300001989 Bacteria 1081
4 JGI24737J22298_10032522 3300001990 Bacteria 1624
5 JGI24735J21928_10048232 3300002067 Bacteria 1233
6 Ga0070676_11589227 3300005328 Bacteria 505
7 Ga0070661_101106817 3300005344 Bacteria 660
8 Ga0070668_100056231 3300005347 Bacteria 3038
9 Ga0070671_100407122 3300005355 Bacteria 1164
10 Ga0070667_100233671 3300005367 Bacteria 1640
11 Ga0070667_101553315 3300005367 Bacteria 622
12 Ga0070713_100082084 3300005436 Bacteria 2752
13 Ga0070663_100028116 3300005455 Bacteria 3824
14 Ga0070678_101752749 3300005456 Bacteria 585
15 Ga0070681_11773346 3300005458 Bacteria 544
16 Ga0068853_100287841 3300005539 Bacteria 1516
17 Ga0070665_100031016 3300005548 Bacteria 5380
18 Ga0070665_100224093 3300005548 Bacteria 1881
19 Ga0070665_100515873 3300005548 Bacteria 1207
20 Ga0068857_100034809 3300005577 Bacteria 4456
21 Ga0068857_100162450 3300005577 Bacteria 2027
22 Ga0068856_100171685 3300005614 Bacteria 2180
23 Ga0068852_100435313 3300005616 Bacteria 1296
24 Ga0068864_100090149 3300005618 Bacteria 2703
25 Ga0068861_100426985 3300005719 Bacteria 1182
26 Ga0068863_100034386 3300005841 Bacteria 4828
27 Ga0081455_10036573 3300005937 Bacteria 4369
28 Ga0081455_10183353 3300005937 Bacteria 1583
29 Ga0070715_10008116 3300006163 Bacteria 3648
30 Ga0105251_10053974 3300009011 Bacteria 1910
31 Ga0105247_10021097 3300009101 Bacteria 3918
32 Ga0105247_10499671 3300009101 Bacteria 886
33 Ga0105248_10384328 3300009177 Bacteria 1581
34 Ga0105238_11564034 3300009551 Bacteria 689
35 Ga0105238_12507711 3300009551 Bacteria 552
36 Ga0105239_10433148 3300010375 Bacteria 1490
37 Ga0105239_13016136 3300010375 Bacteria 549
38 Ga0105246_10342281 3300011119 Bacteria 1223
39 Ga0157374_10049120 3300013296 Bacteria 3918
40 Ga0157374_10644619 3300013296 Bacteria 1071
41 Ga0157378_12036784 3300013297 Unclassified 624
42 Ga0157372_10290480 3300013307 Bacteria 1901
43 Ga0157372_10597491 3300013307 Bacteria 1286
44 Ga0163163_10009853 3300014325 Bacteria 8563
45 Ga0213875_10003608 3300021388 Bacteria 8756
46 Ga0207656_10274591 3300025321 Bacteria 830
47 Ga0207713_1063710 3300025735 Bacteria 1391
48 Ga0207710_10389456 3300025900 Bacteria 714
49 Ga0207647_10002517 3300025904 Bacteria 13867
50 Ga0207685_10038546 3300025905 Bacteria 1767
51 Ga0207643_10392551 3300025908 Bacteria 876
52 Ga0207707_11563116 3300025912 Bacteria 521
53 Ga0207700_10150507 3300025928 Bacteria 1922
54 Ga0207670_10863232 3300025936 Bacteria 756
55 Ga0207711_10663854 3300025941 Bacteria 973
56 Ga0207689_10691669 3300025942 Bacteria 860
57 Ga0207668_10352759 3300025972 Bacteria 1230
58 Ga0207658_10178136 3300025986 Bacteria 1757
59 Ga0207658_11676339 3300025986 Bacteria 581
60 Ga0207678_10000905 3300026067 Bacteria 27202
61 Ga0207641_10302812 3300026088 Bacteria 1510
62 Ga0207676_10035258 3300026095 Bacteria 3796
63 Ga0207674_10082460 3300026116 Bacteria 3217
64 Ga0207674_10691778 3300026116 Bacteria 984
65 Ga0207675_100859751 3300026118 Bacteria 922
66 Ga0207683_11144028 3300026121 Bacteria 722
67 Ga0207683_11717263 3300026121 Bacteria 577
68 Ga0268266_10032667 3300028379 Bacteria 4422
69 Ga0268266_10155989 3300028379 Bacteria 2062
70 Ga0268266_10335178 3300028379 Bacteria 1419
71 Ga0307517_10179521 3300028786 Bacteria 1370
72 Ga0307517_10210016 3300028786 Bacteria 1201
73 Ga0307517_10251635 3300028786 Bacteria 1036
74 Ga0307515_10529289 3300028794 Bacteria 788
75 Ga0307512_10127860 3300030522 Bacteria 1606
76 Ga0307513_10269480 3300031456 Bacteria 1487
77 Ga0307509_10155136 3300031507 Bacteria 2197
78 Ga0307408_100719932 3300031548 Bacteria 899
79 Ga0307518_10001212 3300031838 Bacteria 19320
80 Ga0307518_10136329 3300031838 Bacteria 1718
81 Ga0307518_10546639 3300031838 Bacteria 576
82 Ga0307406_11710900 3300031901 Bacteria 558
83 Ga0307416_100624479 3300032002 Bacteria 1160
84 Ga0307411_11025526 3300032005 Bacteria 740
85 Ga0307411_11038006 3300032005 Bacteria 736
86 Ga0307415_100071644 3300032126 Bacteria 2438
87 Ga0307415_100664308 3300032126 Bacteria 936
88 Ga0307507_10009315 3300033179 Bacteria 13145
89 Ga0307510_10099061 3300033180 Bacteria 2715
90 Ga0373931_0281666 3300035691 Bacteria 1021
91 Ga0436364_0632110 3300037853 Bacteria 27197
92 Ga0451845_0115048 3300041501 Bacteria 1180
93 Ga0451853_0164497 3300041512 Bacteria 2941
94 Ga0451853_0481503 3300041512 Bacteria 4174
95 Ga0439449_0019446 3300042007 Bacteria 2546
96 Ga0439449_0086816 3300042007 Bacteria 1155
97 Ga0450903_060798 3300042138 Bacteria 548
98 Ga0466972_0044773 3300044658 Bacteria 2145
99 Ga0466968_0295994 3300044735 Bacteria 777
100 Ga0466970_0018631 3300044765 Bacteria 3597
101 Ga0466970_0120510 3300044765 Bacteria 1437
102 Ga0466960_0165690 3300044901 Bacteria 1190
103 Ga0466960_0650444 3300044901 Bacteria 629
104 Ga0466967_0835235 3300045976 Bacteria 915
105 Ga0495629_0099002 3300046459 Bacteria 2034
106 Ga0495629_0308086 3300046459 Bacteria 1084
107 Ga0495662_0077648 3300046476 Bacteria 1613
108 Ga0495585_0289708 3300046492 Bacteria 807
109 Ga0495594_0100276 3300046499 Bacteria 1629
110 Ga0495586_0086586 3300046535 Bacteria 1727
111 Ga0495625_0401045 3300046660 Bacteria 857
112 Ga0495635_0772373 3300046663 Bacteria 620
113 Ga0495588_0118077 3300046674 Bacteria 1398
114 Ga0495658_0708494 3300046683 Bacteria 645
115 Ga0495649_0495625 3300046694 Unclassified 608
116 Ga0495581_0322287 3300047315 Bacteria 903
117 Ga0495604_0017086 3300047317 Bacteria 5805
118 Ga0495672_0133624 3300047320 Bacteria 1303
119 Ga0495675_0772055 3300047444 Bacteria 534
120 Ga0496104_0541051 3300048907 Bacteria 1075
121 Ga0496105_0543686 3300048908 Bacteria 907
122 Ga0496105_0613326 3300048908 Bacteria 843
123 Ga0496108_0592216 3300048911 Bacteria 966
124 Ga0496108_1447333 3300048911 Bacteria 573
125 Ga0496109_0023022 3300048912 Bacteria 5524
126 Ga0496110_0617120 3300048913 Bacteria 983
127 Ga0496112_0014548 3300048915 Bacteria 7309
128 Ga0501034_0330139 3300049571 Bacteria 1457
129 Ga0501034_0623103 3300049571 Bacteria 982
130 Ga0501046_0158241 3300049580 Bacteria 1705
131 Ga0501070_1004886 3300049586 Bacteria 647
132 nmdc:mga07m45_231509_c1 3300050496 Bacteria 1075
133 Ga0500578_0345497 3300053086 Bacteria 871
134 Ga0500562_039681 3300053108 Bacteria 1251
135 Ga0500658_0237272 3300053134 Bacteria 837
136 Ga0500634_0202245 3300053161 Bacteria 871
137 2586061191 2585427649 Bacteria 9053857
138 2644016169 2643221601 Bacteria 7493239
139 2644179652 2643221631 Bacteria 8168043
140 2644387804 2643221670 Bacteria 6497041
141 2768643985 2767802112 Bacteria 6465194
142 2809589690 2808606522 Bacteria 9488490
143 2816425950 2816332119 Bacteria 8120218
144 2819741507 2818991472 Bacteria 10089953
145 2856747731 2856741275 Bacteria 8096094
146 2861520348 2861520306 Bacteria 8348283
147 2862185556 2862178590 Bacteria 8583590
148 2867352572 2867346516 Bacteria 7608576
149 2891399779 2891395885 Bacteria 9251614
150 2891556342 2891554331 Bacteria 8812224
151 2891563117 2891562705 Bacteria 8039471
152 2915769758 2915768154 Bacteria 8424322
153 2997607321 2997600082 Bacteria 9896405
154 3006328279 3006321560 Bacteria 8247479
155 3006495862 3006493962 Bacteria 8825450
156 8003317406 8003314358 Bacteria 10575343
157 8047717456 8047710418 Bacteria 11023148
158 8055067684 8055066027 Bacteria 9479577
159 Ga0081455_10076629
160 JGI24740J21852_10013002
161 JGI24739J22299_10071256
162 JGI24737J22298_10032522
163 JGI24735J21928_10048232
164 Ga0070676_11589227
165 Ga0070661_101106817
166 Ga0070668_100056231
167 Ga0070671_100407122
168 Ga0070667_100233671
169 Ga0070667_101553315
170 Ga0070713_100082084
171 Ga0070663_100028116
172 Ga0070678_101752749
173 Ga0070681_11773346
174 Ga0068853_100287841
175 Ga0070665_100031016
176 Ga0070665_100224093
177 Ga0070665_100515873
178 Ga0068857_100034809
179 Ga0068857_100162450
180 Ga0068856_100171685
181 Ga0068852_100435313
182 Ga0068864_100090149
183 Ga0068861_100426985
184 Ga0068863_100034386
185 Ga0081455_10036573
186 Ga0081455_10183353
187 Ga0070715_10008116
188 Ga0105251_10053974
189 Ga0105247_10021097
190 Ga0105247_10499671
191 Ga0105248_10384328
192 Ga0105238_11564034
193 Ga0105238_12507711
194 Ga0105239_10433148
195 Ga0105239_13016136
196 Ga0105246_10342281
197 Ga0157374_10049120
198 Ga0157374_10644619
199 Ga0157378_12036784
200 Ga0157372_10290480
201 Ga0157372_10597491
202 Ga0163163_10009853
203 Ga0213875_10003608
204 Ga0207656_10274591
205 Ga0207713_1063710
206 Ga0207710_10389456
207 Ga0207647_10002517
208 Ga0207685_10038546
209 Ga0207643_10392551
210 Ga0207707_11563116
211 Ga0207700_10150507
212 Ga0207670_10863232
213 Ga0207711_10663854
214 Ga0207689_10691669
215 Ga0207668_10352759
216 Ga0207658_10178136
217 Ga0207658_11676339
218 Ga0207678_10000905
219 Ga0207641_10302812
220 Ga0207676_10035258
221 Ga0207674_10082460
222 Ga0207674_10691778
223 Ga0207675_100859751
224 Ga0207683_11144028
225 Ga0207683_11717263
226 Ga0268266_10032667
227 Ga0268266_10155989
228 Ga0268266_10335178
229 Ga0307517_10179521
230 Ga0307517_10210016
231 Ga0307517_10251635
232 Ga0307515_10529289
233 Ga0307512_10127860
234 Ga0307513_10269480
235 Ga0307509_10155136
236 Ga0307408_100719932
237 Ga0307518_10001212
238 Ga0307518_10136329
239 Ga0307518_10546639
240 Ga0307406_11710900
241 Ga0307416_100624479
242 Ga0307411_11025526
243 Ga0307411_11038006
244 Ga0307415_100071644
245 Ga0307415_100664308
246 Ga0307507_10009315
247 Ga0307510_10099061
248 Ga0373931_0281666
249 Ga0436364_0632110
250 Ga0451845_0115048
251 Ga0451853_0164497
252 Ga0451853_0481503
253 Ga0439449_0019446
254 Ga0439449_0086816
255 Ga0450903_060798
256 Ga0466972_0044773
257 Ga0466968_0295994
258 Ga0466970_0018631
259 Ga0466970_0120510
260 Ga0466960_0165690
261 Ga0466960_0650444
262 Ga0466967_0835235
263 Ga0495629_0099002
264 Ga0495629_0308086
265 Ga0495662_0077648
266 Ga0495585_0289708
267 Ga0495594_0100276
268 Ga0495586_0086586
269 Ga0495625_0401045
270 Ga0495635_0772373
271 Ga0495588_0118077
272 Ga0495658_0708494
273 Ga0495649_0495625
274 Ga0495581_0322287
275 Ga0495604_0017086
276 Ga0495672_0133624
277 Ga0495675_0772055
278 Ga0496104_0541051
279 Ga0496105_0543686
280 Ga0496105_0613326
281 Ga0496108_0592216
282 Ga0496108_1447333
283 Ga0496109_0023022
284 Ga0496110_0617120
285 Ga0496112_0014548
286 Ga0501034_0330139
287 Ga0501034_0623103
288 Ga0501046_0158241
289 Ga0501070_1004886
290 nmdc:mga07m45_231509_c1
291 Ga0500578_0345497
292 Ga0500562_039681
293 Ga0500658_0237272
294 Ga0500634_0202245
295 2586061191
296 2644016169
297 2644179652
298 2644387804
299 2768643985
300 2809589690
301 2816425950
302 2819741507
303 2856747731
304 2861520348
305 2862185556
306 2867352572
307 2891399779
308 2891556342
309 2891563117
310 2915769758
311 2997607321
312 3006328279
313 3006495862
314 8003317406
315 8047717456
316 8055067684

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13404

HTH_AsnC-type

AsnC-type helix-turn-helix domain

3

44

0.99

PF13412

HTH_24

Winged helix-turn-helix DNA-binding

3

50

0.97

PF01037

AsnC_trans_reg

Lrp/AsnC ligand binding domain

67

136

0.94

PF01047

MarR

MarR family

3

58

0.9

PF12802

MarR_2

MarR family

3

58

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2cfx-assembly1.cif.gz_C structure of b.subtilis lrpc 0.9246 3 138
1i1g-assembly1.cif.gz_A crystal structure of the lrp-like transcriptional regulator from the archaeon pyrococcus furiosus 0.9063 5 138
4rgx-assembly1.cif.gz_B-2 crystal structure of putative marr family transcriptional regulator hcar from acinetobacter sp. adp complexed with 3,4-dihydroxy bezoic acid 0.8992 5 52
5hso-assembly1.cif.gz_C crystal structure of mycobacterium tuberculosis marr family protein rv2887 complex with dna 0.8958 5 49
2cfx-assembly1.cif.gz_C structure of b.subtilis lrpc 0.8936 3 138
ID Description Score Start End Superfamily
2dbbA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9806 4 56 1.10.10.10
2p5vE01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9799 6 57 1.10.10.10
2p6tF01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9775 6 57 1.10.10.10
2p5vF01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9764 6 57 1.10.10.10
2p5vH01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9764 6 57 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2K8P7C8-F1-model_v4 HTH-type transcriptional regulator LrpC 0.9593 1 148 GO:0005829
GO:0043200
GO:0043565
AF-A0A2K8P7C8-F1-model_v4 HTH-type transcriptional regulator LrpC 0.953 1 148 GO:0005829
GO:0043200
GO:0043565
AF-A0A7X6SAN7-F1-model_v4 Lrp/AsnC family transcriptional regulator 0.9528 5 139 GO:0005829
GO:0043200
GO:0043565
AF-A0A239L5Q4-F1-model_v4 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 0.9505 1 150 GO:0005829
GO:0043200
GO:0043565
AF-A0A561UQK2-F1-model_v4 AsnC family transcriptional regulator 0.9459 19 147 GO:0005829
GO:0043200
GO:0043565

Map