F228696

General Info

Members Datasets Scaffolds Average Seq Length
158 115 143 500

Family's Representative Sequence

Representative Sequence 3300003781|Ga0055536_1000018|Ga0055536_1000018116
Length 523
Sequence MKKNLYKVIAVLGVSMTTLSACDKNFQEVNIDPINILTSTPDKLLAPALVNSLTPGMMRNRNFNNELMQVTVSISDGEGTVFRYEYRNTYSDYLWNAWYIQLTNFKDIYKQAGKPGTENKSYQGISLVCQSWIYSMLSDTYGDIPYFQSNNATGGVLEPAFDKQQAIYLDMFKKLEEANTLLTEGTAITPSSDPIFKGDIAKWRKFCNSLYLRLLLRVSGKTEVAAQVIAKIKEIVDTNPAKYPIMANNAESATLKWTGLTGTDPFVNPYVNGVRVQDFRSPAIGSFFIERLANWNDPRIDINNANGYANNGINRLGISQGPGGFVGVPSGYAIGAGVVKQAYFYSYDQTSSSVAIGARSLQQSAQTGILMNYAEVQFILAEAALKGYIGGSAENYYYGGMTAAINYWVPNFPTSITSPVFTKYVNEADIDWLNTGSTEDKLEQIHVQKYYALFLVDMQQWFEYRRTGHPVLPKGPGLRNGGVMPARMTYPVYVQSANPTNYQAAVAGQGPDVISTNVWWQKP

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738541283 Pedobacter sp. OK701 Isolate Unclassified
3 2738541284 Pedobacter sp. YR016 Isolate Unclassified
4 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
5 2818991444 Filimonas endophytica 3197 Isolate Unclassified
6 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
7 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
8 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
9 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
10 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
11 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
12 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
13 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
14 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
15 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
16 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
17 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
18 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
19 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
22 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
23 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
24 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
25 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
26 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
27 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
28 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
29 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
50 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
51 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
52 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
55 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
56 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
62 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
70 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
71 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
72 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
76 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
79 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
80 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
83 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
84 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
85 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
86 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
87 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
88 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
89 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
90 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
91 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
92 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
93 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
94 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
97 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
103 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
108 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
109 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
110 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
111 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
112 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
113 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
114 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
115 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.51
Metatranscriptomes 0
Isolates 9.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.19
Nodule 0
Rhizoplane 0
Rhizosphere 69.62
Stem 0
Stem Tuber 0
Unclassified 15.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_731545 2162886007 Bacteria 10192
2 JGI24740J21852_10001142 3300001979 Bacteria 12001
3 JGI25154J39366_1000002 3300002738 Bacteria 466942
4 JGI25153J46596_10002362 3300003215 Bacteria 10926
5 JGI25153J46596_10017329 3300003215 Bacteria 2841
6 rootH2_10003122 3300003320 Bacteria 40679
7 rootH2_10142019 3300003320 Bacteria 3207
8 rootH1_10103158 3300003323 Bacteria 6659
9 rootH1_10263836 3300003323 Bacteria 3857
10 Ga0055536_1000018 3300003781 Bacteria 205832
11 Ga0055528_1001173 3300003790 Bacteria 16951
12 Ga0055530_10004276 3300003791 Bacteria 7465
13 Ga0065165_1000022 3300005262 Bacteria 253404
14 Ga0065714_10003411 3300005288 Bacteria 11162
15 Ga0065714_10003414 3300005288 Bacteria 19472
16 Ga0065704_10070246 3300005289 Bacteria 48710
17 Ga0065704_10070862 3300005289 Bacteria 15296
18 Ga0070690_100018037 3300005330 Bacteria 4256
19 Ga0070670_100031279 3300005331 Bacteria 4583
20 Ga0070659_100000273 3300005366 Bacteria 40388
21 Ga0068853_100009507 3300005539 Bacteria 7834
22 Ga0068861_100146480 3300005719 Bacteria 1933
23 Ga0068860_100000029 3300005843 Bacteria 259192
24 Ga0105240_10000269 3300009093 Bacteria 102625
25 Ga0105240_10000414 3300009093 Bacteria 79229
26 Ga0105240_10000822 3300009093 Bacteria 56372
27 Ga0105240_10088262 3300009093 Bacteria 3795
28 Ga0114129_10007580 3300009147 Bacteria 15451
29 Ga0105241_10007622 3300009174 Bacteria 7954
30 Ga0105237_10000374 3300009545 Bacteria 63655
31 Ga0105237_10060731 3300009545 Bacteria 3780
32 Ga0105237_10139160 3300009545 Bacteria 2422
33 Ga0105238_10004488 3300009551 Bacteria 13826
34 Ga0105238_10022970 3300009551 Bacteria 6358
35 Ga0105249_10023212 3300009553 Bacteria 5564
36 Ga0105239_10002430 3300010375 Bacteria 23727
37 Ga0105239_10034149 3300010375 Bacteria 5584
38 Ga0157373_10000424 3300013100 Bacteria 33838
39 Ga0157373_10000576 3300013100 Bacteria 28626
40 Ga0157373_10000623 3300013100 Bacteria 27754
41 Ga0157371_10002816 3300013102 Bacteria 16285
42 Ga0157370_10001374 3300013104 Bacteria 30122
43 Ga0157370_10004387 3300013104 Bacteria 16197
44 Ga0157370_10010913 3300013104 Bacteria 9539
45 Ga0157370_10133019 3300013104 Bacteria 2319
46 Ga0157369_10001106 3300013105 Bacteria 33739
47 Ga0157378_10201074 3300013297 Bacteria 1884
48 Ga0163162_10000038 3300013306 Bacteria 138065
49 Ga0157372_10000087 3300013307 Bacteria 95840
50 Ga0157372_10006074 3300013307 Bacteria 12830
51 Ga0157372_10044959 3300013307 Bacteria 4895
52 Ga0157372_10091254 3300013307 Bacteria 3465
53 Ga0157372_10179801 3300013307 Bacteria 2448
54 Ga0163163_10102428 3300014325 Bacteria 2886
55 Ga0182008_10000151 3300014497 Bacteria 54331
56 Ga0182008_10022407 3300014497 Unclassified 3235
57 Ga0182008_10028408 3300014497 Bacteria 2828
58 Ga0182008_10029368 3300014497 Bacteria 2778
59 Ga0182006_1000322 3300015261 Bacteria 41718
60 Ga0182006_1000769 3300015261 Bacteria 21837
61 Ga0182006_1015009 3300015261 Bacteria 3328
62 Ga0182007_10013762 3300015262 Unclassified 3074
63 Ga0182005_1000383 3300015265 Bacteria 24460
64 Ga0183373_1010 3300015682 Bacteria 196982
65 Ga0163161_10000168 3300017792 Bacteria 60064
66 Ga0163161_10000290 3300017792 Bacteria 43868
67 Ga0163161_10000755 3300017792 Bacteria 25411
68 Ga0209646_1000005 3300025246 Bacteria 717627
69 Ga0209026_1000252 3300025250 Bacteria 67873
70 Ga0209673_1000287 3300025273 Bacteria 94132
71 Ga0209676_1000001 3300025292 Bacteria 1852142
72 Ga0209564_1010977 3300025295 Bacteria 4110
73 Ga0209758_1010443 3300025297 Bacteria 5557
74 Ga0209758_1022782 3300025297 Bacteria 2856
75 Ga0209050_1000114 3300025298 Bacteria 205865
76 Ga0209050_1000755 3300025298 Bacteria 46537
77 Ga0207426_1000150 3300025302 Bacteria 186352
78 Ga0207426_1003790 3300025302 Bacteria 7847
79 Ga0209257_1007563 3300025304 Bacteria 6514
80 Ga0207695_10000169 3300025913 Bacteria 192566
81 Ga0207695_10000244 3300025913 Bacteria 141138
82 Ga0207695_10000839 3300025913 Bacteria 56384
83 Ga0207695_10039950 3300025913 Bacteria 5038
84 Ga0207695_10046892 3300025913 Bacteria 4577
85 Ga0207671_10001416 3300025914 Bacteria 27847
86 Ga0207671_10006240 3300025914 Bacteria 10682
87 Ga0207690_10003879 3300025932 Bacteria 8839
88 Ga0207639_10062250 3300026041 Bacteria 2884
89 Ga0268264_10000072 3300028381 Bacteria 260791
90 Ga0307515_10000001 3300028794 Bacteria 4259510
91 Ga0307515_10083639 3300028794 Bacteria 4111
92 Ga0307408_100006567 3300031548 Bacteria 7711
93 Ga0307412_10000085 3300031911 Bacteria 88692
94 Ga0307414_10000548 3300032004 Bacteria 19615
95 Ga0307414_10006414 3300032004 Bacteria 6560
96 Ga0395899_0000204 3300037312 Bacteria 87147
97 Ga0395900_0330065 3300037418 Bacteria 1504
98 Ga0395905_0029047 3300037471 Bacteria 5211
99 Ga0466969_0000497 3300044656 Bacteria 21499
100 Ga0466972_0000027 3300044658 Bacteria 174082
101 Ga0466966_0022987 3300044684 Bacteria 4084
102 Ga0466968_0002114 3300044735 Bacteria 7230
103 Ga0466968_0035676 3300044735 Unclassified 2082
104 Ga0466968_0036530 3300044735 Bacteria 2059
105 Ga0466970_0001866 3300044765 Bacteria 10187
106 Ga0466957_0000477 3300044842 Bacteria 19868
107 Ga0466959_0000033 3300045049 Bacteria 109901
108 Ga0466958_0037585 3300045836 Bacteria 2901
109 Ga0495627_013148 3300046453 Unclassified 2917
110 Ga0495638_0059399 3300046460 Bacteria 2368
111 Ga0495638_0062886 3300046460 Bacteria 2290
112 Ga0495606_0004652 3300046507 Bacteria 13573
113 Ga0495610_0000025 3300046512 Bacteria 301208
114 Ga0495610_0002109 3300046512 Bacteria 16957
115 Ga0495632_0054032 3300046519 Bacteria 1970
116 Ga0495637_0056352 3300046520 Bacteria 1627
117 Ga0495609_0033235 3300046538 Bacteria 2342
118 Ga0495633_0000176 3300046558 Bacteria 83645
119 Ga0495668_0000172 3300046616 Bacteria 96882
120 Ga0495668_0015268 3300046616 Bacteria 4488
121 Ga0495611_0000084 3300046648 Bacteria 66870
122 Ga0495687_000004 3300047443 Bacteria 779298
123 Ga0495686_0006699 3300047472 Bacteria 8763
124 Ga0496121_0000011 3300048924 Bacteria 792193
125 Ga0496122_0000555 3300048925 Bacteria 76648
126 Ga0496123_0007517 3300048926 Bacteria 10226
127 Ga0496124_0016912 3300048927 Bacteria 6910
128 Ga0496125_0048670 3300048928 Bacteria 3533
129 Ga0501034_0099722 3300049571 Bacteria 2899
130 Ga0501047_0022950 3300049581 Bacteria 5990
131 Ga0501238_001474 3300049671 Bacteria 2733
132 Ga0501219_000306 3300049703 Bacteria 8566
133 Ga0501044_0106285 3300049823 Bacteria 2819
134 Ga0501284_00039 3300050005 Bacteria 53400
135 nmdc:mga0k408_39198_c1 3300050493 Bacteria 2721
136 nmdc:mga05p37_9168_c1 3300050507 Bacteria 11696
137 Ga0500644_0000859 3300053088 Bacteria 9949
138 Ga0500651_0000872 3300053093 Bacteria 14786
139 Ga0500569_000644 3300053109 Bacteria 5972
140 Ga0500607_037672 3300053121 Bacteria 2635
141 Ga0500568_0016390 3300053139 Bacteria 3297
142 Ga0500616_0011979 3300053153 Bacteria 5094
143 Ga0500611_000019 3300053727 Bacteria 110161

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005288 Ga0065714_10003411 Ga0065714_100034113 443
2 3300046520 Ga0495637_0056352 Ga0495637_0056352_19_1383 451
3 3300037418 Ga0395900_0330065 Ga0395900_0330065_28_1422 452
4 3300045836 Ga0466958_0037585 Ga0466958_0037585_17_1411 452
5 3300003323 rootH1_10103158 rootH1_101031582 456
6 3300044842 Ga0466957_0000477 Ga0466957_0000477_4229_5713 462
7 3300049581 Ga0501047_0022950 Ga0501047_0022950_4067_5527 464
8 3300049823 Ga0501044_0106285 Ga0501044_0106285_160_1620 464
9 3300003320 rootH2_10142019 rootH2_101420192 466
10 3300009093 Ga0105240_10000822 Ga0105240_1000082233 466
11 3300025913 Ga0207695_10000839 Ga0207695_1000083933 466
12 3300009545 Ga0105237_10060731 Ga0105237_100607313 468
13 3300044735 Ga0466968_0002114 Ga0466968_0002114_3201_4721 469
14 3300013307 Ga0157372_10179801 Ga0157372_101798012 470
15 3300032004 Ga0307414_10000548 Ga0307414_1000054815 470
16 3300046648 Ga0495611_0000084 Ga0495611_0000084_35159_36670 470
17 3300015265 Ga0182005_1000383 Ga0182005_10003835 471
18 3300044735 Ga0466968_0035676 Ga0466968_0035676_624_2063 471
19 3300046538 Ga0495609_0033235 Ga0495609_0033235_813_2273 471
20 iso_pu_bacteria 2890737413 2890738108 471
21 3300048927 Ga0496124_0016912 Ga0496124_0016912_2206_3639 476
22 3300046507 Ga0495606_0004652 Ga0495606_0004652_5595_7106 477
23 3300044658 Ga0466972_0000027 Ga0466972_0000027_98882_100396 478
24 3300044735 Ga0466968_0036530 Ga0466968_0036530_477_1991 478
25 3300044765 Ga0466970_0001866 Ga0466970_0001866_1834_3348 478
26 3300049703 Ga0501219_000306 Ga0501219_000306_2651_4144 478
27 3300050005 Ga0501284_00039 Ga0501284_00039_40995_42488 478
28 iso_pu_bacteria 2898713307 2898715183 478
29 3300005289 Ga0065704_10070862 Ga0065704_100708629 479
30 3300046616 Ga0495668_0000172 Ga0495668_0000172_84662_86182 480
31 3300013100 Ga0157373_10000424 Ga0157373_100004246 481
32 3300053139 Ga0500568_0016390 Ga0500568_0016390_761_2269 481
33 3300009093 Ga0105240_10000414 Ga0105240_1000041426 482
34 3300025913 Ga0207695_10000169 Ga0207695_1000016929 482
35 3300017792 Ga0163161_10000168 Ga0163161_1000016825 483
36 3300010375 Ga0105239_10002430 Ga0105239_1000243018 484
37 3300013100 Ga0157373_10000623 Ga0157373_1000062310 486
38 3300013307 Ga0157372_10006074 Ga0157372_100060744 486
39 3300005331 Ga0070670_100031279 Ga0070670_1000312792 489
40 3300046460 Ga0495638_0062886 Ga0495638_0062886_533_2008 490
41 3300053727 Ga0500611_000019 Ga0500611_000019_105607_107082 490
42 3300005539 Ga0068853_100009507 Ga0068853_1000095072 491
43 3300009551 Ga0105238_10022970 Ga0105238_100229702 491
44 3300010375 Ga0105239_10034149 Ga0105239_100341492 491
45 3300025913 Ga0207695_10039950 Ga0207695_100399502 491
46 3300003215 JGI25153J46596_10017329 JGI25153J46596_100173292 492
47 3300003323 rootH1_10263836 rootH1_102638363 492
48 3300003790 Ga0055528_1001173 Ga0055528_100117310 492
49 3300005262 Ga0065165_1000022 Ga0065165_1000022143 492
50 3300013104 Ga0157370_10133019 Ga0157370_101330191 492
51 3300025273 Ga0209673_1000287 Ga0209673_100028756 492
52 3300025297 Ga0209758_1010443 Ga0209758_10104432 492
53 3300025298 Ga0209050_1000755 Ga0209050_10007552 492
54 3300025302 Ga0207426_1003790 Ga0207426_10037904 492
55 3300025304 Ga0209257_1007563 Ga0209257_10075632 492
56 iso_pu_bacteria 2818991442 2819577561 492
57 3300046453 Ga0495627_013148 Ga0495627_013148_1363_2877 493
58 3300046558 Ga0495633_0000176 Ga0495633_0000176_62257_63771 493
59 3300014497 Ga0182008_10028408 Ga0182008_100284082 494
60 3300025913 Ga0207695_10000244 Ga0207695_1000024427 494
61 3300025914 Ga0207671_10006240 Ga0207671_100062408 494
62 iso_pu_bacteria 2821136567 2821142262 494
63 iso_pu_bacteria 2883068021 2883069685 494
64 iso_pu_bacteria 2904467357 2904470570 494
65 3300025913 Ga0207695_10046892 Ga0207695_100468922 495
66 3300046519 Ga0495632_0054032 Ga0495632_0054032_210_1700 495
67 3300048924 Ga0496121_0000011 Ga0496121_0000011_128656_130146 495
68 3300053088 Ga0500644_0000859 Ga0500644_0000859_6097_7587 495
69 3300053109 Ga0500569_000644 Ga0500569_000644_2267_3757 495
70 3300053121 Ga0500607_037672 Ga0500607_037672_456_1946 495
71 3300053153 Ga0500616_0011979 Ga0500616_0011979_1496_2986 495
72 iso_pu_bacteria 2929239360 2929245528 495
73 3300014497 Ga0182008_10022407 Ga0182008_100224072 496
74 3300015262 Ga0182007_10013762 Ga0182007_100137622 496
75 3300044684 Ga0466966_0022987 Ga0466966_0022987_2370_3896 496
76 3300005330 Ga0070690_100018037 Ga0070690_1000180372 497
77 iso_pu_bacteria 2896085136 2896088030 497
78 iso_pu_bacteria 2818991444 2819586884 498
79 iso_pu_bacteria 2896109856 2896114530 500
80 3300049571 Ga0501034_0099722 Ga0501034_0099722_777_2297 501
81 3300009093 Ga0105240_10000269 Ga0105240_1000026914 502
82 3300009174 Ga0105241_10007622 Ga0105241_100076228 502
83 3300009545 Ga0105237_10139160 Ga0105237_101391602 502
84 3300009551 Ga0105238_10004488 Ga0105238_100044886 502
85 3300009553 Ga0105249_10023212 Ga0105249_100232122 502
86 3300013307 Ga0157372_10091254 Ga0157372_100912542 502
87 3300014325 Ga0163163_10102428 Ga0163163_101024282 502
88 3300049671 Ga0501238_001474 Ga0501238_001474_413_1933 502
89 3300005843 Ga0068860_100000029 Ga0068860_10000002993 503
90 3300013306 Ga0163162_10000038 Ga0163162_1000003870 503
91 3300025295 Ga0209564_1010977 Ga0209564_10109772 503
92 3300028381 Ga0268264_10000072 Ga0268264_1000007294 503
93 3300044656 Ga0466969_0000497 Ga0466969_0000497_8044_9564 503
94 3300045049 Ga0466959_0000033 Ga0466959_0000033_11622_13142 503
95 3300046616 Ga0495668_0015268 Ga0495668_0015268_1009_2523 503
96 3300047443 Ga0495687_000004 Ga0495687_000004_366263_367777 503
97 3300013307 Ga0157372_10044959 Ga0157372_100449592 505
98 3300037471 Ga0395905_0029047 Ga0395905_0029047_2095_3624 505
99 iso_pu_bacteria 2929921140 2929927819 505
100 iso_pu_bacteria 8003151029 8003152753 505
101 3300003320 rootH2_10003122 rootH2_1000312224 506
102 3300005719 Ga0068861_100146480 Ga0068861_1001464802 506
103 3300046460 Ga0495638_0059399 Ga0495638_0059399_777_2303 506
104 3300047472 Ga0495686_0006699 Ga0495686_0006699_3235_4761 506
105 iso_pu_bacteria 2738541283 2738756752 506
106 3300005366 Ga0070659_100000273 Ga0070659_1000002732 507
107 3300009093 Ga0105240_10088262 Ga0105240_100882622 507
108 3300013297 Ga0157378_10201074 Ga0157378_102010742 507
109 3300025932 Ga0207690_10003879 Ga0207690_100038793 507
110 3300013102 Ga0157371_10002816 Ga0157371_100028162 508
111 3300013105 Ga0157369_10001106 Ga0157369_1000110612 508
112 3300013307 Ga0157372_10000087 Ga0157372_100000875 508
113 3300026041 Ga0207639_10062250 Ga0207639_100622502 508
114 3300028794 Ga0307515_10000001 Ga0307515_100000012975 508
115 3300037312 Ga0395899_0000204 Ga0395899_0000204_5428_6990 508
116 3300001979 JGI24740J21852_10001142 JGI24740J21852_100011421 509
117 3300002738 JGI25154J39366_1000002 JGI25154J39366_100000220 509
118 3300003215 JGI25153J46596_10002362 JGI25153J46596_100023625 509
119 3300025246 Ga0209646_1000005 Ga0209646_1000005359 509
120 3300025250 Ga0209026_1000252 Ga0209026_100025224 509
121 3300025297 Ga0209758_1022782 Ga0209758_10227821 509
122 3300025302 Ga0207426_1000150 Ga0207426_100015057 509
123 3300050493 nmdc:mga0k408_39198_c1 nmdc:mga0k408_39198_c1_379_1920 509
124 3300009545 Ga0105237_10000374 Ga0105237_1000037411 510
125 3300013104 Ga0157370_10001374 Ga0157370_100013745 510
126 3300013104 Ga0157370_10004387 Ga0157370_1000438712 510
127 3300014497 Ga0182008_10000151 Ga0182008_1000015118 510
128 3300015261 Ga0182006_1000769 Ga0182006_100076910 510
129 3300017792 Ga0163161_10000290 Ga0163161_100002902 510
130 3300017792 Ga0163161_10000755 Ga0163161_100007558 510
131 3300025914 Ga0207671_10001416 Ga0207671_1000141616 510
132 3300048925 Ga0496122_0000555 Ga0496122_0000555_41583_43118 510
133 3300048926 Ga0496123_0007517 Ga0496123_0007517_4215_5750 510
134 3300048928 Ga0496125_0048670 Ga0496125_0048670_51_1586 510
135 3300015682 Ga0183373_1010 Ga0183373_101043 512
136 3300009147 Ga0114129_10007580 Ga0114129_1000758012 515
137 3300031548 Ga0307408_100006567 Ga0307408_1000065673 515
138 3300050507 nmdc:mga05p37_9168_c1 nmdc:mga05p37_9168_c1_6365_7924 515
139 iso_pu_bacteria 2738541284 2738762054 516
140 iso_pu_bacteria 2849281842 2849284315 516
141 3300015261 Ga0182006_1000322 Ga0182006_100032226 518
142 3300046512 Ga0495610_0000025 Ga0495610_0000025_269450_271015 518
143 3300046512 Ga0495610_0002109 Ga0495610_0002109_11132_12697 518
144 3300028794 Ga0307515_10083639 Ga0307515_100836392 519
145 3300003781 Ga0055536_1000018 Ga0055536_1000018116 520
146 3300003791 Ga0055530_10004276 Ga0055530_100042763 520
147 3300014497 Ga0182008_10029368 Ga0182008_100293682 520
148 3300025292 Ga0209676_1000001 Ga0209676_1000001212 520
149 3300025298 Ga0209050_1000114 Ga0209050_100011440 520
150 3300053093 Ga0500651_0000872 Ga0500651_0000872_6125_7687 520
151 2162886007 SwRhRL2b_contig_731545 SwRhRL2b_0051.00002240 521
152 3300005288 Ga0065714_10003414 Ga0065714_1000341412 521
153 3300005289 Ga0065704_10070246 Ga0065704_1007024629 521
154 3300013100 Ga0157373_10000576 Ga0157373_100005764 521
155 3300013104 Ga0157370_10010913 Ga0157370_100109133 521
156 3300015261 Ga0182006_1015009 Ga0182006_10150092 521
157 3300031911 Ga0307412_10000085 Ga0307412_1000008540 521
158 3300032004 Ga0307414_10006414 Ga0307414_100064142 521

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12771

SusD-like_2

Starch-binding associating with outer membrane

33

491

0.86

PF12741

SusD-like

Susd and RagB outer membrane lipoprotein

71

521

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4q69-assembly1.cif.gz_B crystal structure of a susd homolog (bt2259) from bacteroides thetaiotaomicron vpi-5482 at 2.50 a resolution 0.8252 39 520
4q69-assembly1.cif.gz_B crystal structure of a susd homolog (bt2259) from bacteroides thetaiotaomicron vpi-5482 at 2.50 a resolution 0.8201 39 520
3ejn-assembly1.cif.gz_A crystal structure of a susd homolog (bf3025) from bacteroides fragilis nctc 9343 at 1.50 a resolution 0.8066 39 520
3ejn-assembly1.cif.gz_A crystal structure of a susd homolog (bf3025) from bacteroides fragilis nctc 9343 at 1.50 a resolution 0.8015 39 520
4ler-assembly1.cif.gz_A crystal structure of a putative outer membrane protein, probably involved in nutrient binding (bvu_1254) from bacteroides vulgatus atcc 8482 at 1.42 a resolution 0.785 40 520
ID Description Score Start End Superfamily
4q69A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8121 40 520 1.25.40.390
3mx3B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.81 92 237 1.25.40.390
4q69A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8001 40 520 1.25.40.390
3ck9B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7773 81 182 1.25.40.390
5fq4A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7759 43 521 1.25.40.390
ID Description Score Start End GO Terms
AF-A0A4Q3L1V3-F1-model_v4 deleted 0.9511 113 521
AF-A0A519VWF9-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9442 368 521
AF-A0A519W5Q3-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9426 148 521
AF-A0A4Q3L1V3-F1-model_v4 deleted 0.9398 113 521
AF-A0A4V1UGZ4-F1-model_v4 deleted 0.9371 232 520

Feature Viewer

pLDDT pTM Quality
85.12 0.88 High
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Predicted Structure (AlphaFold2)

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