F225975

General Info

Members Datasets Scaffolds Average Seq Length
156 122 129 469

Family's Representative Sequence

Representative Sequence 3300053139|Ga0500568_0000176|Ga0500568_0000176_7673_9205
Length 510
Sequence MMGAPDRIVPASGTNPGSLASLSSFRRHREVIVAANPLAPEWLIEPGDANELAPAVWSRHVDRAASGALRIAGVAAPALHAAYGTPLYVIDEDDARSRANAIRDAFSSAFGRHGAHTTVYYAGKAFLSIEVARWMIDAGLNLDVCSGGELAVALAADIDPRRLGFHGNNKSLAEIDQAVEVGVGAIVLDSVVEIDRVADAAERHGRHQNVRLRINSGVHASTHEYLATAREDQKFGIPLADAEAAVAAIRARPGLRFLGLHSHIGSQIFESAGFAEAARRLLEVHARLLAGGEVPELNLGGGFGIAYTSVDEVAPIETIAHELAEVVAAECGRLGIPVPAVAIEPGRAIIGPAGLTLYEVGTVKDVRVDETAVRRYVSVDGGMSDNLRTALYKAEYAVRIANRVSDAEPALVRVAGKHCESGDIVVQNDYLPGDVRPGDLLAVPATGAYCWSLSSNYNYLGRPAVVAVRDGHSRVLVRRETEYDLLRRDSGYSSGAEEIDAHPTHRSDLT

Samples

Sample ID Description Type Environment
1 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
2 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
3 2808606372 Agromyces sp. 23-23 Isolate Unclassified
4 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
5 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
6 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
7 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
8 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
9 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
10 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
11 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
12 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
13 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
14 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
15 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
16 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
17 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
18 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
19 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
20 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
21 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
22 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
23 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
24 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
25 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
26 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
27 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
28 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
29 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
32 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
33 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
34 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
35 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
39 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
52 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
53 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
55 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
74 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
75 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
76 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
77 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
80 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
81 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
82 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
85 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
86 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
87 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
88 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
89 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
90 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
101 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
102 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
105 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
108 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
109 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
110 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
111 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
112 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
113 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
114 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
115 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
116 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
117 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
118 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
121 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
122 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.69
Metatranscriptomes 0
Isolates 17.31

Biome Distribution

Category Percentage (%)
Aerial Root 0.64
Bulb 0
Endosphere 18.59
Nodule 0
Rhizoplane 0
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 14.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1000432 3300002772 Bacteria 22983
2 JGI25165J46597_1000142 3300003214 Bacteria 119146
3 rootL2_10154252 3300003322 Bacteria 3899
4 Ga0070658_10000162 3300005327 Bacteria 58038
5 Ga0070658_10029260 3300005327 Bacteria 4425
6 Ga0070671_100064420 3300005355 Bacteria 3052
7 Ga0070659_100057523 3300005366 Bacteria 3067
8 Ga0070667_100010416 3300005367 Bacteria 7674
9 Ga0070708_100186637 3300005445 Bacteria 1939
10 Ga0070678_100150088 3300005456 Bacteria 1876
11 Ga0068853_100115889 3300005539 Bacteria 2385
12 Ga0068855_100091474 3300005563 Bacteria 3509
13 Ga0068857_100000330 3300005577 Bacteria 32633
14 Ga0068852_100015629 3300005616 Bacteria 5895
15 Ga0068852_100022441 3300005616 Bacteria 5062
16 Ga0068851_10000005 3300005834 Bacteria 262808
17 Ga0068858_100000058 3300005842 Bacteria 117238
18 Ga0075365_10015452 3300006038 Bacteria 4619
19 Ga0105240_10088450 3300009093 Bacteria 3790
20 Ga0105240_10166750 3300009093 Bacteria 2612
21 Ga0105245_10025597 3300009098 Bacteria 5189
22 Ga0105241_10000322 3300009174 Bacteria 36168
23 Ga0105248_10245995 3300009177 Bacteria 2013
24 Ga0105237_10000464 3300009545 Bacteria 57468
25 Ga0105237_10111204 3300009545 Bacteria 2731
26 Ga0105238_10027191 3300009551 Bacteria 5829
27 Ga0105239_10328471 3300010375 Bacteria 1725
28 Ga0157371_10008359 3300013102 Bacteria 8254
29 Ga0157370_10011205 3300013104 Bacteria 9403
30 Ga0207427_100099 3300025231 Bacteria 121767
31 Ga0209437_100535 3300025233 Bacteria 26406
32 Ga0209148_1000401 3300025254 Bacteria 50504
33 Ga0209233_1000001 3300025261 Bacteria 2992747
34 Ga0207656_10000001 3300025321 Bacteria 1323684
35 Ga0207656_10000003 3300025321 Bacteria 771644
36 Ga0207656_10000004 3300025321 Bacteria 632320
37 Ga0207705_10000001 3300025909 Bacteria 2061880
38 Ga0207654_10000003 3300025911 Bacteria 1030378
39 Ga0207695_10007488 3300025913 Bacteria 13869
40 Ga0207671_10000001 3300025914 Bacteria 1318881
41 Ga0207671_10069053 3300025914 Bacteria 2634
42 Ga0207694_10000066 3300025924 Bacteria 128281
43 Ga0207687_10041896 3300025927 Bacteria 3147
44 Ga0207690_10003781 3300025932 Bacteria 8963
45 Ga0207690_10059929 3300025932 Bacteria 2580
46 Ga0207691_10030161 3300025940 Bacteria 5069
47 Ga0207711_10003893 3300025941 Bacteria 12844
48 Ga0207667_10003862 3300025949 Bacteria 18433
49 Ga0207703_10000026 3300026035 Bacteria 211591
50 Ga0207678_10065732 3300026067 Bacteria 3114
51 Ga0207702_10148695 3300026078 Bacteria 2128
52 Ga0207674_10005041 3300026116 Bacteria 15765
53 Ga0207675_100113218 3300026118 Bacteria 2562
54 Ga0207683_10220129 3300026121 Bacteria 1729
55 Ga0207698_10002420 3300026142 Bacteria 11044
56 Ga0466972_0042043 3300044658 Bacteria 2224
57 Ga0466965_0000012 3300044683 Bacteria 100611
58 Ga0466963_0000256 3300044694 Bacteria 23361
59 Ga0466970_0001808 3300044765 Bacteria 10310
60 Ga0466970_0022195 3300044765 Bacteria 3313
61 Ga0466960_0014268 3300044901 Bacteria 3397
62 Ga0466967_0242758 3300045976 Bacteria 1719
63 Ga0495590_0000103 3300046457 Bacteria 50735
64 Ga0495650_0001048 3300046471 Bacteria 30777
65 Ga0495672_0006160 3300047320 Bacteria 9356
66 Ga0496117_0009275 3300048920 Bacteria 9195
67 Ga0496117_0009373 3300048920 Bacteria 9116
68 Ga0496118_0000089 3300048921 Bacteria 175942
69 Ga0496119_0001228 3300048922 Bacteria 31914
70 Ga0496119_0008440 3300048922 Bacteria 9048
71 Ga0496119_0023672 3300048922 Bacteria 4345
72 Ga0496120_0012524 3300048923 Bacteria 5769
73 Ga0496121_0000040 3300048924 Bacteria 348494
74 Ga0496122_0003729 3300048925 Bacteria 19668
75 Ga0496123_0003907 3300048926 Bacteria 16199
76 Ga0496123_0034898 3300048926 Bacteria 3595
77 Ga0496123_0096616 3300048926 Bacteria 1734
78 Ga0496124_0000037 3300048927 Bacteria 317430
79 Ga0496124_0001961 3300048927 Bacteria 28116
80 Ga0501031_0129535 3300049568 Bacteria 1648
81 Ga0501032_0084633 3300049569 Bacteria 2108
82 Ga0501033_0007346 3300049570 Bacteria 8583
83 Ga0501033_0137258 3300049570 Bacteria 1769
84 Ga0501034_0004948 3300049571 Bacteria 14666
85 Ga0501034_0006906 3300049571 Bacteria 12132
86 Ga0501034_0012979 3300049571 Bacteria 8587
87 Ga0501034_0057001 3300049571 Bacteria 3929
88 Ga0501034_0136270 3300049571 Bacteria 2436
89 Ga0501034_0161595 3300049571 Bacteria 2210
90 Ga0501037_0064634 3300049573 Bacteria 2666
91 Ga0501038_0024724 3300049574 Bacteria 5355
92 Ga0501039_0211603 3300049575 Bacteria 1525
93 Ga0501043_0008683 3300049579 Bacteria 7995
94 Ga0501043_0036081 3300049579 Bacteria 3889
95 Ga0501047_0005582 3300049581 Bacteria 11843
96 Ga0501047_0017324 3300049581 Bacteria 6899
97 Ga0501070_0003131 3300049586 Bacteria 14404
98 Ga0501070_0011506 3300049586 Bacteria 7473
99 Ga0501070_0028428 3300049586 Bacteria 4689
100 Ga0501071_0000167 3300049587 Bacteria 28392
101 Ga0501072_0010589 3300049588 Bacteria 7023
102 Ga0501073_0000383 3300049589 Bacteria 29939
103 Ga0501080_0000057 3300049742 Bacteria 72729
104 Ga0501080_0036890 3300049742 Bacteria 4563
105 Ga0501083_0150058 3300049744 Bacteria 1526
106 Ga0501035_0001689 3300049822 Bacteria 22341
107 Ga0501044_0001143 3300049823 Bacteria 31426
108 nmdc:mga00v17_70963_c1 3300050491 Bacteria 2158
109 Ga0500643_000414 3300053087 Bacteria 32589
110 Ga0500651_0000161 3300053093 Bacteria 43186
111 Ga0500556_0000007 3300053104 Bacteria 331400
112 Ga0500556_0002264 3300053104 Bacteria 6362
113 Ga0500562_003555 3300053108 Bacteria 3908
114 Ga0500592_009673 3300053116 Bacteria 1534
115 Ga0500593_001355 3300053117 Bacteria 8830
116 Ga0500655_002256 3300053133 Bacteria 3539
117 Ga0500559_0002252 3300053136 Bacteria 10189
118 Ga0500568_0000021 3300053139 Bacteria 185406
119 Ga0500568_0000176 3300053139 Bacteria 55879
120 Ga0500568_0000557 3300053139 Bacteria 27409
121 Ga0500568_0001839 3300053139 Bacteria 13076
122 Ga0500568_0009338 3300053139 Bacteria 4667
123 Ga0500573_0000007 3300053140 Bacteria 272970
124 Ga0500573_0006498 3300053140 Bacteria 6335
125 Ga0500573_0010255 3300053140 Bacteria 5225
126 Ga0500573_0035277 3300053140 Bacteria 2885
127 Ga0500588_0012552 3300053146 Bacteria 2104
128 Ga0500616_0001242 3300053153 Bacteria 25566
129 Ga0500620_000119 3300053155 Bacteria 15657

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2984551494 2984554430 371
2 3300005445 Ga0070708_100186637 Ga0070708_1001866372 388
3 3300053155 Ga0500620_000119 Ga0500620_000119_14367_15626 392
4 3300005456 Ga0070678_100150088 Ga0070678_1001500882 408
5 3300026118 Ga0207675_100113218 Ga0207675_1001132182 408
6 3300026121 Ga0207683_10220129 Ga0207683_102201292 408
7 3300006038 Ga0075365_10015452 Ga0075365_100154523 415
8 3300044694 Ga0466963_0000256 Ga0466963_0000256_6951_8372 417
9 3300049570 Ga0501033_0007346 Ga0501033_0007346_4970_6403 421
10 3300049571 Ga0501034_0057001 Ga0501034_0057001_575_2008 421
11 3300049574 Ga0501038_0024724 Ga0501038_0024724_1992_3425 421
12 3300048926 Ga0496123_0096616 Ga0496123_0096616_127_1494 422
13 3300050491 nmdc:mga00v17_70963_c1 nmdc:mga00v17_70963_c1_185_1573 423
14 3300053139 Ga0500568_0000557 Ga0500568_0000557_20452_21870 426
15 3300044658 Ga0466972_0042043 Ga0466972_0042043_170_1576 427
16 3300045976 Ga0466967_0242758 Ga0466967_0242758_77_1483 427
17 3300053104 Ga0500556_0002264 Ga0500556_0002264_3863_5248 427
18 3300053117 Ga0500593_001355 Ga0500593_001355_3819_5204 427
19 3300053133 Ga0500655_002256 Ga0500655_002256_49_1434 427
20 iso_pu_bacteria 2995726249 2995727351 427
21 iso_pu_bacteria 2857733635 2857736830 429
22 3300009093 Ga0105240_10166750 Ga0105240_101667503 430
23 3300049571 Ga0501034_0136270 Ga0501034_0136270_582_1958 430
24 3300049575 Ga0501039_0211603 Ga0501039_0211603_89_1465 430
25 3300053116 Ga0500592_009673 Ga0500592_009673_35_1411 430
26 3300053139 Ga0500568_0001839 Ga0500568_0001839_678_2054 430
27 3300049571 Ga0501034_0006906 Ga0501034_0006906_7452_8831 431
28 iso_pu_bacteria 2721755702 2723642815 432
29 iso_pu_bacteria 2808606372 2808902812 432
30 iso_pu_bacteria 2935409751 2935413013 432
31 3300048925 Ga0496122_0003729 Ga0496122_0003729_14187_15575 433
32 3300048926 Ga0496123_0003907 Ga0496123_0003907_9978_11366 433
33 3300049571 Ga0501034_0161595 Ga0501034_0161595_217_1602 433
34 3300049586 Ga0501070_0028428 Ga0501070_0028428_2903_4288 433
35 3300049588 Ga0501072_0010589 Ga0501072_0010589_3243_4628 433
36 3300049589 Ga0501073_0000383 Ga0501073_0000383_17343_18728 433
37 3300049742 Ga0501080_0036890 Ga0501080_0036890_1912_3297 433
38 3300053108 Ga0500562_003555 Ga0500562_003555_2135_3520 433
39 3300053136 Ga0500559_0002252 Ga0500559_0002252_3938_5323 433
40 3300048924 Ga0496121_0000040 Ga0496121_0000040_285148_286536 434
41 iso_pu_bacteria 2904501621 2904503233 434
42 iso_pu_bacteria 2908674828 2908675590 434
43 iso_pu_bacteria 2909074476 2909074637 434
44 iso_pu_bacteria 2919039151 2919040901 434
45 iso_pu_bacteria 2928500415 2928500574 434
46 3300047320 Ga0495672_0006160 Ga0495672_0006160_3249_4640 435
47 3300049571 Ga0501034_0004948 Ga0501034_0004948_11728_13119 435
48 3300049579 Ga0501043_0008683 Ga0501043_0008683_513_1904 435
49 3300049581 Ga0501047_0017324 Ga0501047_0017324_2304_3695 435
50 3300049586 Ga0501070_0011506 Ga0501070_0011506_729_2120 435
51 3300049742 Ga0501080_0000057 Ga0501080_0000057_59523_60914 435
52 3300049744 Ga0501083_0150058 Ga0501083_0150058_95_1486 435
53 3300053139 Ga0500568_0009338 Ga0500568_0009338_1918_3315 435
54 iso_pu_bacteria 2852643534 2852645053 435
55 iso_pu_bacteria 2919042368 2919043973 435
56 iso_pu_bacteria 8055034563 8055036693 435
57 3300009177 Ga0105248_10245995 Ga0105248_102459952 436
58 3300013102 Ga0157371_10008359 Ga0157371_100083594 436
59 3300046457 Ga0495590_0000103 Ga0495590_0000103_30239_31654 436
60 3300046471 Ga0495650_0001048 Ga0495650_0001048_28376_29770 436
61 3300048922 Ga0496119_0001228 Ga0496119_0001228_21231_22661 436
62 iso_pu_bacteria 2751185788 2753302289 436
63 iso_pu_bacteria 2870622029 2870623031 436
64 iso_pu_bacteria 2904430863 2904432788 436
65 iso_pu_bacteria 2928104781 2928105242 436
66 iso_pu_bacteria 2964326757 2964329143 436
67 iso_pu_bacteria 8055037949 8055040912 436
68 3300003322 rootL2_10154252 rootL2_101542523 437
69 3300044683 Ga0466965_0000012 Ga0466965_0000012_74285_75724 437
70 3300048920 Ga0496117_0009275 Ga0496117_0009275_7063_8496 437
71 3300048922 Ga0496119_0008440 Ga0496119_0008440_4255_5688 437
72 3300048923 Ga0496120_0012524 Ga0496120_0012524_1279_2712 437
73 3300049568 Ga0501031_0129535 Ga0501031_0129535_202_1605 437
74 3300049569 Ga0501032_0084633 Ga0501032_0084633_507_1940 437
75 3300049570 Ga0501033_0137258 Ga0501033_0137258_256_1689 437
76 3300049573 Ga0501037_0064634 Ga0501037_0064634_11_1414 437
77 3300049581 Ga0501047_0005582 Ga0501047_0005582_10197_11600 437
78 3300049822 Ga0501035_0001689 Ga0501035_0001689_256_1659 437
79 3300049823 Ga0501044_0001143 Ga0501044_0001143_18127_19530 437
80 3300053104 Ga0500556_0000007 Ga0500556_0000007_244674_246089 437
81 3300053139 Ga0500568_0000021 Ga0500568_0000021_98664_100079 437
82 3300053140 Ga0500573_0000007 Ga0500573_0000007_42304_43839 437
83 3300005577 Ga0068857_100000330 Ga0068857_10000033033 438
84 3300005616 Ga0068852_100022441 Ga0068852_1000224413 438
85 3300010375 Ga0105239_10328471 Ga0105239_103284711 438
86 3300026116 Ga0207674_10005041 Ga0207674_1000504114 438
87 3300026142 Ga0207698_10002420 Ga0207698_100024204 438
88 3300044765 Ga0466970_0001808 Ga0466970_0001808_8032_9432 438
89 3300053140 Ga0500573_0035277 Ga0500573_0035277_1365_2765 438
90 iso_pu_bacteria 2862993130 2862995477 438
91 iso_pu_bacteria 2939657138 2939657437 438
92 3300005327 Ga0070658_10000162 Ga0070658_1000016245 439
93 3300005355 Ga0070671_100064420 Ga0070671_1000644201 439
94 3300009098 Ga0105245_10025597 Ga0105245_100255973 439
95 3300013104 Ga0157370_10011205 Ga0157370_100112055 439
96 3300025254 Ga0209148_1000401 Ga0209148_100040116 439
97 3300025909 Ga0207705_10000001 Ga0207705_100000011823 439
98 3300025927 Ga0207687_10041896 Ga0207687_100418962 439
99 3300025932 Ga0207690_10059929 Ga0207690_100599292 439
100 3300025940 Ga0207691_10030161 Ga0207691_100301614 439
101 3300025941 Ga0207711_10003893 Ga0207711_100038936 439
102 3300026067 Ga0207678_10065732 Ga0207678_100657322 439
103 3300053093 Ga0500651_0000161 Ga0500651_0000161_20254_21669 439
104 3300053140 Ga0500573_0006498 Ga0500573_0006498_330_1754 439
105 iso_pu_bacteria 2966924647 2966925147 439
106 3300044901 Ga0466960_0014268 Ga0466960_0014268_489_1904 440
107 3300048920 Ga0496117_0009373 Ga0496117_0009373_815_2239 440
108 3300048921 Ga0496118_0000089 Ga0496118_0000089_27695_29119 440
109 3300048922 Ga0496119_0023672 Ga0496119_0023672_369_1793 440
110 3300048926 Ga0496123_0034898 Ga0496123_0034898_733_2157 440
111 3300048927 Ga0496124_0000037 Ga0496124_0000037_117275_118699 440
112 3300049571 Ga0501034_0012979 Ga0501034_0012979_6772_8187 440
113 3300049579 Ga0501043_0036081 Ga0501043_0036081_260_1675 440
114 3300049586 Ga0501070_0003131 Ga0501070_0003131_7776_9191 440
115 3300049587 Ga0501071_0000167 Ga0501071_0000167_720_2135 440
116 3300044765 Ga0466970_0022195 Ga0466970_0022195_950_2374 441
117 3300048927 Ga0496124_0001961 Ga0496124_0001961_3654_5081 441
118 3300053087 Ga0500643_000414 Ga0500643_000414_9227_10684 441
119 3300053140 Ga0500573_0010255 Ga0500573_0010255_191_1651 441
120 3300053146 Ga0500588_0012552 Ga0500588_0012552_173_1588 441
121 3300053153 Ga0500616_0001242 Ga0500616_0001242_12542_13957 441
122 3300005327 Ga0070658_10029260 Ga0070658_100292603 442
123 3300005366 Ga0070659_100057523 Ga0070659_1000575232 442
124 3300005367 Ga0070667_100010416 Ga0070667_1000104163 442
125 3300005539 Ga0068853_100115889 Ga0068853_1001158892 442
126 3300005563 Ga0068855_100091474 Ga0068855_1000914742 442
127 3300005616 Ga0068852_100015629 Ga0068852_1000156292 442
128 3300005834 Ga0068851_10000005 Ga0068851_1000000567 442
129 3300005842 Ga0068858_100000058 Ga0068858_10000005829 442
130 3300009093 Ga0105240_10088450 Ga0105240_100884503 442
131 3300009174 Ga0105241_10000322 Ga0105241_1000032224 442
132 3300009545 Ga0105237_10000464 Ga0105237_1000046456 442
133 3300009545 Ga0105237_10111204 Ga0105237_101112043 442
134 3300009551 Ga0105238_10027191 Ga0105238_100271915 442
135 3300025321 Ga0207656_10000001 Ga0207656_10000001234 442
136 3300025321 Ga0207656_10000003 Ga0207656_10000003340 442
137 3300025321 Ga0207656_10000004 Ga0207656_10000004197 442
138 3300025911 Ga0207654_10000003 Ga0207654_10000003553 442
139 3300025913 Ga0207695_10007488 Ga0207695_1000748811 442
140 3300025914 Ga0207671_10000001 Ga0207671_10000001232 442
141 3300025914 Ga0207671_10069053 Ga0207671_100690533 442
142 3300025924 Ga0207694_10000066 Ga0207694_1000006682 442
143 3300025932 Ga0207690_10003781 Ga0207690_100037812 442
144 3300025949 Ga0207667_10003862 Ga0207667_100038624 442
145 3300026035 Ga0207703_10000026 Ga0207703_1000002661 442
146 3300026078 Ga0207702_10148695 Ga0207702_101486951 442
147 iso_pu_bacteria 2897561785 2897563111 442
148 iso_pu_bacteria 2946024296 2946026317 442
149 3300053139 Ga0500568_0000176 Ga0500568_0000176_7673_9205 443
150 iso_pu_bacteria 2852677369 2852679063 445
151 iso_pu_bacteria 2857737099 2857739483 446
152 3300002772 JGI25164J39214_1000432 JGI25164J39214_100043215 448
153 3300003214 JGI25165J46597_1000142 JGI25165J46597_10001422 448
154 3300025231 Ga0207427_100099 Ga0207427_10009942 448
155 3300025233 Ga0209437_100535 Ga0209437_1005354 448
156 3300025261 Ga0209233_1000001 Ga0209233_10000012806 448

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02784

Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

95

351

0.93

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

128

307

0.8

PF00278

Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

87

447

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
1hkw-assembly1.cif.gz_B mycobacterium diaminopimelate dicarboxylase (lysa) 0.9295 25 440
5x7n-assembly1.cif.gz_A crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum 0.9209 23 440
5x7n-assembly1.cif.gz_B crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum 0.9177 23 440
2p3e-assembly1.cif.gz_B crystal structure of aq1208 from aquifex aeolicus 0.8991 33 442
1tuf-assembly1.cif.gz_A crystal structure of diaminopimelate decarboxylase from m. jannaschi 0.8894 32 440
ID Description Score Start End Superfamily
2o0tA01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9247 299 440 2.40.37.10
af_P9WIU7_308_444_2.40.37.10 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9242 301 437 2.40.37.10
2o0tA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9142 67 295 3.20.20.10
af_Q2FYN4_284_419_2.40.37.10 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.909 297 440 2.40.37.10
af_Q2FYN4_34_283_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9059 69 293 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A6B3FN51-F1-model_v4 Diaminopimelate decarboxylase 0.9879 94 173 GO:0008836
GO:0009089
AF-A0A0Q5DYL7-F1-model_v4 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20) 0.9817 8 441 GO:0008836
GO:0009089
GO:0030170
AF-A0A6L6E195-F1-model_v4 Diaminopimelate decarboxylase 0.9776 12 257 GO:0008836
GO:0009089
AF-A0A1M3LFZ7-F1-model_v4 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20) 0.9772 7 442 GO:0008836
GO:0009089
GO:0030170
AF-A0A0S9DKD4-F1-model_v4 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20) 0.9756 9 445 GO:0008836
GO:0009089
GO:0030170

Feature Viewer

pLDDT pTM Quality
87.75 0.88 High
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Predicted Structure (AlphaFold2)

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