F224974

General Info

Members Datasets Scaffolds Average Seq Length
156 132 312 282

Family's Representative Sequence

Representative Sequence 3300025909|Ga0207705_10282189|Ga0207705_102821892
Length 331
Sequence MRRWAHPGPLEREEWQYHPASCGNCQTENMRTHEHGDLAMLLRSWRDRLSPVDVGLTVGDSRRTSGLRREELASLAGVSVDYLVRLEQGRALHPSAQVAASLARALQLSDAERDHLYTVSGLLPPSPDEVPTHIPPGVQRLVARMGEVPLAVFSASWDLITWSPLWAALLGEPAPSGAGRRNLLIMHFAGLSLGQGGNRIVDRSTDADAFGTSLVADLRRVHGRYPKDGAVRELVDTLLEKSDRFRELWNTGAVGEHQSERKVVRNDFVGDIELDCDVFTVAGTDLRIVAYTAATGSDAAEKLDFLRVSSVSAVATATRTGAAAAGFTASR

Samples

Sample ID Description Type Environment
1 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
7 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
8 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
9 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
12 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
13 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
14 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
15 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
16 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
19 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
20 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
21 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
22 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
23 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
24 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
32 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
33 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
34 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
35 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
36 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
37 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
38 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
39 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
40 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
41 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
42 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
43 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
44 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
45 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
46 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
47 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
48 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
49 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
50 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
51 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
52 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
53 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
54 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
55 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
56 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
57 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
58 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
59 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
60 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
61 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
62 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
63 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
64 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
65 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
66 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
67 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
68 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
69 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
70 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
71 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
72 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
73 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
74 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
75 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
76 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
80 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
97 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
98 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
99 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
100 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
101 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
102 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
103 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
104 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
105 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
106 2619618881 Frankia sp. ACN1ag Isolate Unclassified
107 2619619003 Frankia sp. CpI1-P Isolate Nodule
108 2626541554 Frankia sp. AvcI.1 Isolate Nodule
109 2643221617 Nocardioides sp. Root79 Isolate Unclassified
110 2643221620 Nocardioides sp. Root240 Isolate Unclassified
111 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
112 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
113 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
114 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
115 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
116 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
117 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
118 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
119 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
120 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
121 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
122 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
123 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
124 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
125 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
126 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
127 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
128 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
129 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
130 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
131 8054920844 Frankia tisae Agncl-8 Isolate Nodule
132 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.13
Metatranscriptomes 0
Isolates 19.87

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.05
Nodule 2.56
Rhizoplane 7.05
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 1.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207705_10282189 3300025909 Unclassified 1271
2 rootL2_10226314 3300003322 Bacteria 1725
3 Ga0055540_1013171 3300003792 Bacteria 2545
4 Ga0070658_10279514 3300005327 Bacteria 1421
5 Ga0070682_100213127 3300005337 Bacteria 1370
6 Ga0070665_100136964 3300005548 Bacteria 2451
7 Ga0068857_100375597 3300005577 Bacteria 1319
8 Ga0068864_100008903 3300005618 Bacteria 8274
9 Ga0068863_100011370 3300005841 Bacteria 8616
10 Ga0068863_100062055 3300005841 Bacteria 3535
11 Ga0081455_10033657 3300005937 Bacteria 4602
12 Ga0081539_10126358 3300005985 Bacteria 1263
13 Ga0075368_10008990 3300006042 Bacteria 3583
14 Ga0075367_10008313 3300006178 Bacteria 5373
15 Ga0105245_10870553 3300009098 Bacteria 942
16 Ga0105247_10320845 3300009101 Bacteria 1081
17 Ga0105248_10004546 3300009177 Bacteria 15355
18 Ga0105248_10218424 3300009177 Bacteria 2146
19 Ga0105238_10070666 3300009551 Bacteria 3490
20 Ga0157369_10058876 3300013105 Bacteria 4143
21 Ga0157378_10147911 3300013297 Bacteria 2186
22 Ga0163163_10007935 3300014325 Bacteria 9386
23 Ga0163163_10140367 3300014325 Bacteria 2458
24 Ga0157379_10457124 3300014968 Bacteria 1179
25 Ga0157376_10047620 3300014969 Bacteria 3540
26 Ga0213875_10002018 3300021388 Bacteria 12521
27 Ga0209051_1001401 3300025303 Bacteria 20760
28 Ga0207694_10047869 3300025924 Bacteria 3307
29 Ga0207702_10394511 3300026078 Bacteria 1333
30 Ga0207641_10131415 3300026088 Bacteria 2248
31 Ga0207676_10011698 3300026095 Bacteria 6278
32 Ga0207676_10013680 3300026095 Bacteria 5827
33 Ga0207674_10535811 3300026116 Bacteria 1131
34 Ga0268266_10123932 3300028379 Bacteria 2303
35 Ga0307517_10071428 3300028786 Bacteria 3111
36 Ga0307515_10000598 3300028794 Bacteria 84186
37 Ga0307511_10122374 3300030521 Bacteria 1603
38 Ga0307508_10189143 3300031616 Bacteria 1660
39 Ga0307516_10032588 3300031730 Bacteria 5246
40 Ga0307516_10074872 3300031730 Bacteria 3240
41 Ga0307507_10000005 3300033179 Bacteria 281494
42 Ga0307510_10003943 3300033180 Bacteria 17391
43 Ga0466969_0075895 3300044656 Bacteria 1610
44 Ga0466972_0028107 3300044658 Bacteria 2778
45 Ga0466966_0002623 3300044684 Bacteria 11780
46 Ga0466961_0080335 3300044693 Bacteria 2064
47 Ga0466963_0298697 3300044694 Bacteria 1132
48 Ga0466968_0003452 3300044735 Bacteria 5849
49 Ga0466959_0005097 3300045049 Bacteria 8939
50 Ga0466958_0141366 3300045836 Bacteria 1515
51 Ga0495651_0012226 3300046462 Bacteria 6612
52 Ga0495651_0289442 3300046462 Bacteria 1103
53 Ga0495662_0015417 3300046476 Bacteria 3710
54 Ga0495662_0020828 3300046476 Bacteria 3172
55 Ga0495664_0054886 3300046477 Bacteria 2370
56 Ga0495594_0010431 3300046499 Bacteria 4819
57 Ga0495594_0116203 3300046499 Bacteria 1511
58 Ga0495628_0016882 3300046516 Bacteria 6085
59 Ga0495628_0018178 3300046516 Bacteria 5830
60 Ga0495652_0001522 3300046529 Bacteria 25422
61 Ga0495640_0000966 3300046533 Bacteria 22212
62 Ga0495645_0030214 3300046543 Bacteria 3945
63 Ga0495634_0120421 3300046642 Bacteria 1681
64 Ga0495635_0139925 3300046663 Bacteria 1649
65 Ga0495657_0006085 3300046675 Bacteria 9466
66 Ga0495657_0029216 3300046675 Bacteria 3868
67 Ga0495623_0072422 3300046679 Bacteria 2143
68 Ga0495613_0004065 3300046689 Bacteria 10942
69 Ga0495613_0077707 3300046689 Bacteria 2414
70 Ga0495624_0128580 3300046690 Bacteria 1554
71 Ga0495589_0040541 3300046794 Bacteria 2325
72 Ga0495600_0034341 3300046809 Bacteria 3292
73 Ga0495581_0061274 3300047315 Bacteria 2174
74 Ga0495581_0119098 3300047315 Bacteria 1536
75 Ga0495636_0036842 3300047318 Bacteria 2019
76 Ga0495636_0083537 3300047318 Bacteria 1378
77 Ga0495674_0313191 3300047319 Bacteria 1280
78 Ga0495676_0197011 3300047321 Bacteria 1402
79 Ga0495687_010926 3300047443 Bacteria 4926
80 Ga0495675_0034039 3300047444 Bacteria 3252
81 Ga0495686_0006550 3300047472 Bacteria 8888
82 Ga0495593_0005794 3300047673 Bacteria 7285
83 Ga0496104_0009931 3300048907 Bacteria 8498
84 Ga0496108_0011986 3300048911 Bacteria 7054
85 Ga0496109_0002876 3300048912 Bacteria 14406
86 Ga0496109_0354644 3300048912 Bacteria 1386
87 Ga0496110_0034171 3300048913 Bacteria 4403
88 Ga0496111_0014094 3300048914 Bacteria 5453
89 Ga0496112_0013196 3300048915 Bacteria 7621
90 Ga0496112_0014251 3300048915 Bacteria 7368
91 Ga0496113_0007982 3300048916 Bacteria 6859
92 Ga0496114_0193189 3300048917 Bacteria 1781
93 Ga0496117_0079787 3300048920 Bacteria 2155
94 Ga0496122_0017055 3300048925 Bacteria 6817
95 Ga0501031_0054288 3300049568 Bacteria 2611
96 Ga0501032_0001726 3300049569 Bacteria 17305
97 Ga0501033_0017536 3300049570 Bacteria 5409
98 Ga0501034_0043033 3300049571 Bacteria 4571
99 Ga0501034_0148161 3300049571 Bacteria 2323
100 Ga0501036_0015212 3300049572 Bacteria 6424
101 Ga0501036_0040284 3300049572 Bacteria 3951
102 Ga0501037_0002552 3300049573 Bacteria 13167
103 Ga0501037_0023773 3300049573 Bacteria 4530
104 Ga0501038_0094631 3300049574 Bacteria 2497
105 Ga0501039_0153518 3300049575 Bacteria 1809
106 Ga0501042_0071636 3300049578 Bacteria 2479
107 Ga0501043_0004741 3300049579 Bacteria 11028
108 Ga0501046_0007262 3300049580 Bacteria 9742
109 Ga0501046_0045668 3300049580 Bacteria 3479
110 Ga0501047_0242943 3300049581 Bacteria 1650
111 Ga0501048_0024350 3300049582 Bacteria 4419
112 Ga0501080_0285092 3300049742 Bacteria 1501
113 Ga0501035_0087019 3300049822 Bacteria 2753
114 Ga0501035_0510539 3300049822 Bacteria 988
115 Ga0501044_0058292 3300049823 Bacteria 3960
116 Ga0501044_0233981 3300049823 Bacteria 1783
117 nmdc:mga06z11_1007_c1 3300050494 Bacteria 10289
118 nmdc:mga04h51_9114_c1 3300050495 Bacteria 2676
119 Ga0495655_0023888 3300053083 Bacteria 1415
120 Ga0500660_020254 3300053100 Bacteria 3548
121 Ga0500573_0000220 3300053140 Bacteria 23454
122 Ga0500573_0066336 3300053140 Bacteria 2063
123 Ga0500573_0210395 3300053140 Unclassified 1026
124 Ga0500616_0002020 3300053153 Bacteria 17916
125 Ga0466962_0021895 3300061719 Bacteria 3069
126 2579853032 2579778521 Bacteria 7624758
127 2585321413 2582581314 Bacteria 11452267
128 2616699184 2616644814 Bacteria 11555299
129 2616701167 2616644814 Bacteria 11555299
130 2619855958 2619618881 Bacteria 7521104
131 2620348403 2619619003 Bacteria 7619552
132 2626635461 2626541554 Bacteria 7741902
133 2644100868 2643221617 Bacteria 5139111
134 2644117277 2643221620 Bacteria 5134593
135 2784592138 2784132148 Bacteria 8627943
136 2793983425 2791355406 Bacteria 11364898
137 2808915435 2808606375 Bacteria 9466072
138 2819693406 2818991463 Bacteria 7948711
139 2857731967 2857729791 Bacteria 4040535
140 2867303343 2867302475 Bacteria 7087181
141 2867317899 2867312974 Bacteria 7058875
142 2867319595 2867319477 Bacteria 7069771
143 2868091730 2868088558 Bacteria 7609351
144 2884703375 2884693830 Bacteria 11273186
145 2895443600 2895442618 Bacteria 11027144
146 2928124170 2928121344 Bacteria 3972376
147 2966603014 2966598605 Bacteria 7676064
148 2966925267 2966924647 Bacteria 3268643
149 8047896561 8047893842 Bacteria 11723082
150 8048131657 8048127548 Bacteria 11053136
151 8048362374 8048356638 Bacteria 11044339
152 8048373575 8048369669 Bacteria 11666822
153 8048384667 8048379754 Bacteria 11877923
154 8054920636 8054913762 Bacteria 7713009
155 8054924174 8054920844 Bacteria 7068637
156 8056581680 8056579771 Bacteria 5840325
157 Ga0207705_10282189
158 rootL2_10226314
159 Ga0055540_1013171
160 Ga0070658_10279514
161 Ga0070682_100213127
162 Ga0070665_100136964
163 Ga0068857_100375597
164 Ga0068864_100008903
165 Ga0068863_100011370
166 Ga0068863_100062055
167 Ga0081455_10033657
168 Ga0081539_10126358
169 Ga0075368_10008990
170 Ga0075367_10008313
171 Ga0105245_10870553
172 Ga0105247_10320845
173 Ga0105248_10004546
174 Ga0105248_10218424
175 Ga0105238_10070666
176 Ga0157369_10058876
177 Ga0157378_10147911
178 Ga0163163_10007935
179 Ga0163163_10140367
180 Ga0157379_10457124
181 Ga0157376_10047620
182 Ga0213875_10002018
183 Ga0209051_1001401
184 Ga0207694_10047869
185 Ga0207702_10394511
186 Ga0207641_10131415
187 Ga0207676_10011698
188 Ga0207676_10013680
189 Ga0207674_10535811
190 Ga0268266_10123932
191 Ga0307517_10071428
192 Ga0307515_10000598
193 Ga0307511_10122374
194 Ga0307508_10189143
195 Ga0307516_10032588
196 Ga0307516_10074872
197 Ga0307507_10000005
198 Ga0307510_10003943
199 Ga0466969_0075895
200 Ga0466972_0028107
201 Ga0466966_0002623
202 Ga0466961_0080335
203 Ga0466963_0298697
204 Ga0466968_0003452
205 Ga0466959_0005097
206 Ga0466958_0141366
207 Ga0495651_0012226
208 Ga0495651_0289442
209 Ga0495662_0015417
210 Ga0495662_0020828
211 Ga0495664_0054886
212 Ga0495594_0010431
213 Ga0495594_0116203
214 Ga0495628_0016882
215 Ga0495628_0018178
216 Ga0495652_0001522
217 Ga0495640_0000966
218 Ga0495645_0030214
219 Ga0495634_0120421
220 Ga0495635_0139925
221 Ga0495657_0006085
222 Ga0495657_0029216
223 Ga0495623_0072422
224 Ga0495613_0004065
225 Ga0495613_0077707
226 Ga0495624_0128580
227 Ga0495589_0040541
228 Ga0495600_0034341
229 Ga0495581_0061274
230 Ga0495581_0119098
231 Ga0495636_0036842
232 Ga0495636_0083537
233 Ga0495674_0313191
234 Ga0495676_0197011
235 Ga0495687_010926
236 Ga0495675_0034039
237 Ga0495686_0006550
238 Ga0495593_0005794
239 Ga0496104_0009931
240 Ga0496108_0011986
241 Ga0496109_0002876
242 Ga0496109_0354644
243 Ga0496110_0034171
244 Ga0496111_0014094
245 Ga0496112_0013196
246 Ga0496112_0014251
247 Ga0496113_0007982
248 Ga0496114_0193189
249 Ga0496117_0079787
250 Ga0496122_0017055
251 Ga0501031_0054288
252 Ga0501032_0001726
253 Ga0501033_0017536
254 Ga0501034_0043033
255 Ga0501034_0148161
256 Ga0501036_0015212
257 Ga0501036_0040284
258 Ga0501037_0002552
259 Ga0501037_0023773
260 Ga0501038_0094631
261 Ga0501039_0153518
262 Ga0501042_0071636
263 Ga0501043_0004741
264 Ga0501046_0007262
265 Ga0501046_0045668
266 Ga0501047_0242943
267 Ga0501048_0024350
268 Ga0501080_0285092
269 Ga0501035_0087019
270 Ga0501035_0510539
271 Ga0501044_0058292
272 Ga0501044_0233981
273 nmdc:mga06z11_1007_c1
274 nmdc:mga04h51_9114_c1
275 Ga0495655_0023888
276 Ga0500660_020254
277 Ga0500573_0000220
278 Ga0500573_0066336
279 Ga0500573_0210395
280 Ga0500616_0002020
281 Ga0466962_0021895
282 2579853032
283 2585321413
284 2616699184
285 2616701167
286 2619855958
287 2620348403
288 2626635461
289 2644100868
290 2644117277
291 2784592138
292 2793983425
293 2808915435
294 2819693406
295 2857731967
296 2867303343
297 2867317899
298 2867319595
299 2868091730
300 2884703375
301 2895443600
302 2928124170
303 2966603014
304 2966925267
305 8047896561
306 8048131657
307 8048362374
308 8048373575
309 8048384667
310 8054920636
311 8054924174
312 8056581680

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01381

HTH_3

Helix-turn-helix

61

112

0.92

PF17765

MLTR_LBD

MmyB-like transcription regulator ligand binding domain

134

306

0.92

PF13560

HTH_31

Helix-turn-helix domain

37

116

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4yba-assembly1.cif.gz_A the structure of the c.kpn2i controller protein 0.9473 36 76
3zkc-assembly1.cif.gz_A crystal structure of the master regulator for biofilm formation sinr in complex with dna. 0.939 8 78
1y7y-assembly1.cif.gz_A high-resolution crystal structure of the restriction-modification controller protein c.ahdi from aeromonas hydrophila 0.9285 3 82
1y7y-assembly1.cif.gz_B high-resolution crystal structure of the restriction-modification controller protein c.ahdi from aeromonas hydrophila 0.921 1 82
7o81-assembly1.cif.gz_AU rabbit 80s ribosome colliding in another ribosome stalled by the sars-cov-2 pseudoknot 0.9184 6 77
ID Description Score Start End Superfamily
4ybaA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9473 36 76 1.10.260.40
3zkcA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.939 8 78 1.10.260.40
1y7yA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9285 3 82 1.10.260.40
1y7yB00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.921 1 82 1.10.260.40
af_Q58006_80_170_1.10.260.40 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9067 7 78 1.10.260.40
ID Description Score Start End GO Terms
AF-A0A6B3VRU3-F1-model_v4 deleted 0.9924 7 92
AF-A0A6G0FLT7-F1-model_v4 Helix-turn-helix transcriptional regulator 0.9903 2 89 GO:0003677
AF-A0A7W7S3Z1-F1-model_v4 Transcriptional regulator with XRE-family HTH domain 0.9817 1 89 GO:0003677
AF-A0A6B3FDD3-F1-model_v4 Helix-turn-helix domain-containing protein 0.9781 13 94 GO:0003677
AF-A0A2W4REA5-F1-model_v4 Transcriptional regulator 0.9768 3 88 GO:0003677

Map