F213014

General Info

Members Datasets Scaffolds Average Seq Length
151 104 303 768

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2929177148|2929177729
Length 824
Sequence SSHIIICCSLLCLVILAVSSCSTTRTVPEGDRLYTGSDVKWITDTITKKRPKDYSSLMEGMDKRIRPNRNRKFLGMPIKLWLYNLGNEPKGKGLNYLLRRKWGEPPVLLSQAKPDYTSQVLEEYLVDNGYFQAGVVSDIKLSGKKKASIKYTATPNHRYTIKSVTYLTDSSAIGKTVTYTKPESSLIIGANYSLDSVKAERERIHAALKEQGYYYFTPDYLLVQVDSTNSGTVDLFVKIKDNTPLLALRPYRMHDIVLFPDYSLDNDSASTQGTPVRYKGIYIVDSAHRFKSSAFDRSVFLRPDSLYRLSSHNITLQRLINLGVFKFVKGQFSPVRDTSIHNLVGGGPNVTGNRDSSRRRDTSGRNLNRRDSTYARDTSQANNYRAMVNNRVALDSGWLDAKLFLTPYKRRSLQTELRGTSKSNGFIGSQIQITAKNRNWLHSAALLEIGLRGGLEWQTGNKNAGGSNSYGLGAEAAVTFPRFITPFRGLNIRTPYVPKTRISASYELYSRADLYNLNAYTLQLQYLWQRTQYLSHIFAPVALTYVLPTKTTPAYDSILANDPSQRNAIEKQFILGGNYTITYNNQQANRVHSFYLSGNIDISGNIAGLIIPKNDTGQKTLLGNSFAQYERFTAEARHYWQLGKGKQWVNRLLIGYGLPYGNSATLPFVKQFFTGGSSSIRAFRARTLGPGSYHNPAVDTSALLANEAGDIKLEFNSELRVHVASVFNVAAFVDAGNIWLQKDVPDKPGSKFAFNTFYKDIAVGGGVGLRIDASIVVVRLDLAIPFRVPYLPENERWVFDKIDFSDPDWRKKNLILNIAIGYPF

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
4 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
33 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
34 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
36 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
37 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
40 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
42 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
44 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
55 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
58 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
62 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
63 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
64 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
67 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
68 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
69 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
70 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
71 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
72 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
73 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
79 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
80 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
81 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
82 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
83 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
84 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
85 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
86 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
87 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
88 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
89 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
90 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
91 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
92 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
93 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
94 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
95 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
96 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
97 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
98 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
99 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
100 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
101 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
102 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
103 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
104 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.4
Metatranscriptomes 0
Isolates 10.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.83
Nodule 0
Rhizoplane 0
Rhizosphere 54.3
Stem 0
Stem Tuber 0
Unclassified 3.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000954 3300001979 Bacteria 12857
2 JGI24739J22299_10000163 3300001989 Bacteria 21825
3 JGI25154J39366_1000023 3300002738 Bacteria 219569
4 JGI25157J39369_1002285 3300002741 Bacteria 5076
5 JGI25153J46596_10000396 3300003215 Bacteria 29349
6 rootH1_10042410 3300003316 Bacteria 5204
7 rootH1_10042410 3300003323 Bacteria 2681
8 rootH2_10005386 3300003320 Bacteria 74798
9 rootH2_10008990 3300003320 Bacteria 20341
10 rootH2_10013781 3300003320 Bacteria 10366
11 rootH2_10073842 3300003320 Bacteria 4259
12 rootH2_10124476 3300003320 Bacteria 5808
13 rootH2_10323001 3300003320 Bacteria 3212
14 rootL2_10037502 3300003322 Bacteria 19387
15 rootL2_10180988 3300003322 Unclassified 4805
16 rootL2_10181669 3300003322 Bacteria 5137
17 rootH1_10177314 3300003323 Bacteria 6301
18 JGI25160J50197_1001612 3300003354 Bacteria 11086
19 Ga0055542_1002243 3300003762 Bacteria 6789
20 Ga0055530_10010693 3300003791 Bacteria 3363
21 Ga0055530_10010704 3300003791 Bacteria 3358
22 Ga0055531_10000080 3300003794 Bacteria 103922
23 Ga0065165_1000027 3300005262 Bacteria 228507
24 Ga0065165_1000226 3300005262 Bacteria 99005
25 Ga0070681_10004505 3300005458 Bacteria 13289
26 Ga0070665_100000006 3300005548 Bacteria 718034
27 Ga0068855_100000729 3300005563 Bacteria 40389
28 Ga0068855_100003624 3300005563 Bacteria 18883
29 Ga0068855_100014972 3300005563 Bacteria 9342
30 Ga0068857_100002490 3300005577 Bacteria 15064
31 Ga0068856_100011260 3300005614 Bacteria 8681
32 Ga0068856_100046613 3300005614 Bacteria 4269
33 Ga0068852_100000186 3300005616 Bacteria 42147
34 Ga0068860_100000005 3300005843 Bacteria 472349
35 Ga0068860_100010663 3300005843 Bacteria 9076
36 Ga0081540_1008870 3300005983 Bacteria 6981
37 Ga0105240_10000059 3300009093 Bacteria 219860
38 Ga0105240_10000100 3300009093 Bacteria 176640
39 Ga0105240_10007119 3300009093 Bacteria 16295
40 Ga0105240_10036180 3300009093 Bacteria 6353
41 Ga0111539_10008682 3300009094 Bacteria 12899
42 Ga0114129_10025976 3300009147 Bacteria 8294
43 Ga0105237_10000256 3300009545 Bacteria 75634
44 Ga0105237_10004056 3300009545 Bacteria 17086
45 Ga0105238_10008647 3300009551 Bacteria 10188
46 Ga0105239_10000211 3300010375 Bacteria 85890
47 Ga0105239_10002624 3300010375 Bacteria 22738
48 Ga0105239_10039269 3300010375 Bacteria 5186
49 Ga0157370_10019462 3300013104 Bacteria 6809
50 Ga0157370_10026501 3300013104 Bacteria 5723
51 Ga0163162_10000578 3300013306 Bacteria 33905
52 Ga0157372_10001557 3300013307 Bacteria 24967
53 Ga0182005_1000097 3300015265 Bacteria 66720
54 Ga0209436_100457 3300025208 Bacteria 18206
55 Ga0209436_101465 3300025208 Bacteria 8203
56 Ga0209258_100116 3300025242 Bacteria 190317
57 Ga0209646_1000004 3300025246 Bacteria 786587
58 Ga0209026_1000095 3300025250 Bacteria 164309
59 Ga0209148_1000251 3300025254 Bacteria 85638
60 Ga0209673_1000203 3300025273 Bacteria 119623
61 Ga0209130_1000510 3300025284 Bacteria 39344
62 Ga0209676_1001032 3300025292 Bacteria 32333
63 Ga0209758_1001033 3300025297 Bacteria 36447
64 Ga0209758_1004115 3300025297 Bacteria 12461
65 Ga0209050_1002360 3300025298 Bacteria 16469
66 Ga0209050_1008777 3300025298 Bacteria 5312
67 Ga0209050_1013141 3300025298 Bacteria 3712
68 Ga0209050_1014462 3300025298 Bacteria 3394
69 Ga0207426_1000024 3300025302 Bacteria 534075
70 Ga0207426_1000313 3300025302 Bacteria 94934
71 Ga0207426_1002089 3300025302 Bacteria 13796
72 Ga0207426_1005107 3300025302 Bacteria 6123
73 Ga0209257_1000004 3300025304 Bacteria 1678347
74 Ga0209257_1001198 3300025304 Bacteria 32624
75 Ga0207707_10026036 3300025912 Bacteria 5116
76 Ga0207695_10000027 3300025913 Bacteria 612456
77 Ga0207695_10000073 3300025913 Bacteria 312565
78 Ga0207695_10000164 3300025913 Bacteria 196777
79 Ga0207695_10025061 3300025913 Bacteria 6691
80 Ga0207671_10002629 3300025914 Bacteria 18908
81 Ga0207671_10005286 3300025914 Bacteria 11970
82 Ga0207659_10018336 3300025926 Bacteria 4587
83 Ga0207667_10000519 3300025949 Bacteria 50770
84 Ga0207667_10004401 3300025949 Bacteria 17259
85 Ga0207674_10002149 3300026116 Bacteria 24925
86 Ga0207674_10063646 3300026116 Bacteria 3723
87 Ga0207698_10002418 3300026142 Bacteria 11045
88 Ga0268266_10000010 3300028379 Bacteria 1030233
89 Ga0268264_10000012 3300028381 Bacteria 521740
90 Ga0268264_10007493 3300028381 Bacteria 9105
91 Ga0307517_10033639 3300028786 Bacteria 5876
92 Ga0265327_10000146 3300031251 Bacteria 154436
93 Ga0265327_10000197 3300031251 Bacteria 126837
94 Ga0265327_10000684 3300031251 Bacteria 54331
95 Ga0265327_10003887 3300031251 Bacteria 13752
96 Ga0307408_100000321 3300031548 Bacteria 45938
97 Ga0307408_100002289 3300031548 Bacteria 13626
98 Ga0307408_100004378 3300031548 Bacteria 9599
99 Ga0307516_10002039 3300031730 Bacteria 27534
100 Ga0307510_10002257 3300033180 Bacteria 21765
101 Ga0451577_0000396 3300042876 Bacteria 80086
102 Ga0451577_0089674 3300042876 Bacteria 2744
103 Ga0466972_0004400 3300044658 Bacteria 7044
104 Ga0466961_0033065 3300044693 Unclassified 3324
105 Ga0453684_0000024 3300044712 Bacteria 819351
106 Ga0453684_0144178 3300044712 Unclassified 2839
107 Ga0466971_0014811 3300044719 Unclassified 3431
108 Ga0466959_0002225 3300045049 Bacteria 12358
109 Ga0495638_0000013 3300046460 Bacteria 430133
110 Ga0495606_0016458 3300046507 Bacteria 5636
111 Ga0495648_0009641 3300046524 Bacteria 7450
112 Ga0495633_0000125 3300046558 Bacteria 104459
113 Ga0495611_0000665 3300046648 Bacteria 19571
114 Ga0495687_000009 3300047443 Bacteria 419317
115 Ga0495686_0000058 3300047472 Bacteria 240089
116 Ga0496121_0000081 3300048924 Bacteria 229506
117 Ga0501033_0011190 3300049570 Bacteria 6873
118 Ga0501034_0002811 3300049571 Bacteria 20358
119 Ga0501039_0044073 3300049575 Bacteria 3445
120 Ga0501043_0017830 3300049579 Bacteria 5566
121 Ga0501047_0055077 3300049581 Unclassified 3846
122 Ga0501217_000615 3300049661 Bacteria 6007
123 Ga0501241_000217 3300049758 Bacteria 13023
124 Ga0501044_0028603 3300049823 Bacteria 5883
125 Ga0500644_0000458 3300053088 Bacteria 18625
126 Ga0500646_0000085 3300053090 Bacteria 26453
127 Ga0500646_0001158 3300053090 Bacteria 7129
128 Ga0500583_0004356 3300053092 Bacteria 4601
129 Ga0500651_0035693 3300053093 Bacteria 3132
130 Ga0500562_000015 3300053108 Bacteria 143120
131 Ga0500616_0000013 3300053153 Bacteria 674172
132 Ga0500622_0000118 3300053156 Bacteria 82672
133 Ga0500622_0001005 3300053156 Bacteria 23792
134 Ga0500622_0003031 3300053156 Bacteria 11602
135 Ga0500622_0011096 3300053156 Bacteria 4918
136 Ga0500636_0010909 3300053177 Bacteria 5313
137 2929177729 2929177148 Bacteria 7883697
138 2522547717 2522125168 Bacteria 7376607
139 2819574961 2818991442 Bacteria 8318214
140 2819676916 2818991460 Bacteria 7595395
141 2821141057 2821136567 Bacteria 8080116
142 2883068236 2883068021 Bacteria 6192739
143 2884796758 2884791551 Bacteria 8511252
144 2896089963 2896085136 Bacteria 6129793
145 2896110613 2896109856 Bacteria 7140722
146 2904471558 2904467357 Bacteria 8057758
147 2929160162 2929154850 Bacteria 6753285
148 2929240086 2929239360 Bacteria 7745570
149 2929921789 2929921140 Bacteria 8649150
150 2945980076 2945977869 Bacteria 7777518
151 2946014063 2946013367 Bacteria 7766675
152 8003154343 8003151029 Bacteria 8187759
153 JGI24740J21852_10000954
154 JGI24739J22299_10000163
155 JGI25154J39366_1000023
156 JGI25157J39369_1002285
157 JGI25153J46596_10000396
158 rootH1_10042410
159 rootH2_10005386
160 rootH2_10008990
161 rootH2_10013781
162 rootH2_10073842
163 rootH2_10124476
164 rootH2_10323001
165 rootL2_10037502
166 rootL2_10180988
167 rootL2_10181669
168 rootH1_10177314
169 JGI25160J50197_1001612
170 Ga0055542_1002243
171 Ga0055530_10010693
172 Ga0055530_10010704
173 Ga0055531_10000080
174 Ga0065165_1000027
175 Ga0065165_1000226
176 Ga0070681_10004505
177 Ga0070665_100000006
178 Ga0068855_100000729
179 Ga0068855_100003624
180 Ga0068855_100014972
181 Ga0068857_100002490
182 Ga0068856_100011260
183 Ga0068856_100046613
184 Ga0068852_100000186
185 Ga0068860_100000005
186 Ga0068860_100010663
187 Ga0081540_1008870
188 Ga0105240_10000059
189 Ga0105240_10000100
190 Ga0105240_10007119
191 Ga0105240_10036180
192 Ga0111539_10008682
193 Ga0114129_10025976
194 Ga0105237_10000256
195 Ga0105237_10004056
196 Ga0105238_10008647
197 Ga0105239_10000211
198 Ga0105239_10002624
199 Ga0105239_10039269
200 Ga0157370_10019462
201 Ga0157370_10026501
202 Ga0163162_10000578
203 Ga0157372_10001557
204 Ga0182005_1000097
205 Ga0209436_100457
206 Ga0209436_101465
207 Ga0209258_100116
208 Ga0209646_1000004
209 Ga0209026_1000095
210 Ga0209148_1000251
211 Ga0209673_1000203
212 Ga0209130_1000510
213 Ga0209676_1001032
214 Ga0209758_1001033
215 Ga0209758_1004115
216 Ga0209050_1002360
217 Ga0209050_1008777
218 Ga0209050_1013141
219 Ga0209050_1014462
220 Ga0207426_1000024
221 Ga0207426_1000313
222 Ga0207426_1002089
223 Ga0207426_1005107
224 Ga0209257_1000004
225 Ga0209257_1001198
226 Ga0207707_10026036
227 Ga0207695_10000027
228 Ga0207695_10000073
229 Ga0207695_10000164
230 Ga0207695_10025061
231 Ga0207671_10002629
232 Ga0207671_10005286
233 Ga0207659_10018336
234 Ga0207667_10000519
235 Ga0207667_10004401
236 Ga0207674_10002149
237 Ga0207674_10063646
238 Ga0207698_10002418
239 Ga0268266_10000010
240 Ga0268264_10000012
241 Ga0268264_10007493
242 Ga0307517_10033639
243 Ga0265327_10000146
244 Ga0265327_10000197
245 Ga0265327_10000684
246 Ga0265327_10003887
247 Ga0307408_100000321
248 Ga0307408_100002289
249 Ga0307408_100004378
250 Ga0307516_10002039
251 Ga0307510_10002257
252 Ga0451577_0000396
253 Ga0451577_0089674
254 Ga0466972_0004400
255 Ga0466961_0033065
256 Ga0453684_0000024
257 Ga0453684_0144178
258 Ga0466971_0014811
259 Ga0466959_0002225
260 Ga0495638_0000013
261 Ga0495606_0016458
262 Ga0495648_0009641
263 Ga0495633_0000125
264 Ga0495611_0000665
265 Ga0495687_000009
266 Ga0495686_0000058
267 Ga0496121_0000081
268 Ga0501033_0011190
269 Ga0501034_0002811
270 Ga0501039_0044073
271 Ga0501043_0017830
272 Ga0501047_0055077
273 Ga0501217_000615
274 Ga0501241_000217
275 Ga0501044_0028603
276 Ga0500644_0000458
277 Ga0500646_0000085
278 Ga0500646_0001158
279 Ga0500583_0004356
280 Ga0500651_0035693
281 Ga0500562_000015
282 Ga0500616_0000013
283 Ga0500622_0000118
284 Ga0500622_0001005
285 Ga0500622_0003031
286 Ga0500622_0011096
287 Ga0500636_0010909
288 2929177729
289 2522547717
290 2819574961
291 2819676916
292 2821141057
293 2883068236
294 2884796758
295 2896089963
296 2896110613
297 2904471558
298 2929160162
299 2929240086
300 2929921789
301 2945980076
302 2946014063
303 8003154343

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01103

Omp85

Omp85 superfamily domain

468

800

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3q6b-assembly1.cif.gz_A the high-resolution and new form crystal structure of bama potra4-5 from e.coli 0.7882 142 352
3q6b-assembly1.cif.gz_A the high-resolution and new form crystal structure of bama potra4-5 from e.coli 0.7791 142 352
4n74-assembly1.cif.gz_A crystal structure of outer membrane protein tama beta-barrel domain in e.coli 0.7638 355 763
4n74-assembly1.cif.gz_A crystal structure of outer membrane protein tama beta-barrel domain in e.coli 0.7531 355 763
6fsu-assembly2.cif.gz_B crystal structure of e.coli bama beta-barrel with a c-terminal extension 0.7217 357 726
ID Description Score Start End Superfamily
af_Q10478_139_474_2.40.160.50 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7807 376 765 2.40.160.50
af_Q55DS3_74_395_2.40.160.50 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7761 355 763 2.40.160.50
af_Q55DS3_74_395_2.40.160.50 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7717 355 763 2.40.160.50
af_P46576_102_433_2.40.160.50 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7691 357 765 2.40.160.50
4c00A04 Mainly Beta;Beta Barrel;Porin;membrane protein fhac: a member of the omp85/tpsb transporter family 0.7672 355 763 2.40.160.50
ID Description Score Start End GO Terms
AF-A0A519LJS7-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9436 463 765 GO:0009279
AF-A0A519R158-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9412 651 765 GO:0019867
AF-A0A257IQQ5-F1-model_v4 Bacterial surface antigen (D15) domain-containing protein 0.9379 380 765 GO:0019867
AF-A0A519VZG1-F1-model_v4 Uncharacterized protein 0.9356 2 630
AF-A0A0B5RYR7-F1-model_v4 deleted 0.9344 15 765

Map