F212958

General Info

Members Datasets Scaffolds Average Seq Length
151 117 102 335

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221566|2643846640
Length 366
Sequence TGLSLDSVSVLLVWTAIAVYALAFIAYAVDLARRGAVAVDAQVPQRELVGAGRAGIIPSMTAQETKADAALNAPIGQRQRLVWARIGTSLTVLGFLFHLSGDVTRGIAAGRVPWSNMYEFALTGTLLIVAVYLGVLFRYDLRFLGTFITGLVVVLLGGATLAFYVEIVPLMDPLKSVWLVIHVFVASLATALFALAFGLSVLQLMQARRERRITAAAEVEAEAASAAGPTRPEAPGDASAAPGGGVGTAPPKSGPRFLGTLPGADALESLAYRFAILGFIFWTFTLIAGSIWANDAWGRYWGFDTKEVWTFVVWVLYAGYIHARATRGWRGSRSAWLSIIGFTAVMFNFTIVNMFFKGLHAYSGLS

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221566 Microbacterium sp. Root166 Isolate Unclassified
5 2643221572 Leifsonia sp. Root60 Isolate Unclassified
6 2643221575 Microbacterium sp. Root61 Isolate Unclassified
7 2643221597 Microbacterium sp. Root180 Isolate Unclassified
8 2643221649 Leifsonia sp. Root4 Isolate Unclassified
9 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
10 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
11 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
12 2773857759 Microbacterium sp. 1294 Isolate Unclassified
13 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
14 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
15 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
16 2808606372 Agromyces sp. 23-23 Isolate Unclassified
17 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
18 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
19 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
20 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
21 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
22 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
23 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
24 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
25 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
26 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
27 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
28 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
29 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
30 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
31 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
32 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
33 2919069694 Microbacterium sp. 1154 Isolate Unclassified
34 2919395869 Microbacterium resistens 2980 Isolate Unclassified
35 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
36 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
37 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
38 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
39 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
40 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
41 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
42 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
43 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
44 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
45 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
46 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
47 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
48 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
49 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
50 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
51 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
52 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
53 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
54 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
55 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
56 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
59 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
62 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
71 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
74 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
75 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
76 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
77 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
78 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
85 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
89 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
90 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
91 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
92 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
93 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
94 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
95 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
96 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
97 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
98 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
99 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
100 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
101 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
102 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
105 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
108 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
109 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
110 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
111 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
112 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
113 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
114 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
115 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
116 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
117 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 67.55
Metatranscriptomes 0
Isolates 32.45

Biome Distribution

Category Percentage (%)
Aerial Root 1.32
Bulb 0
Endosphere 11.92
Nodule 0
Rhizoplane 10.6
Rhizosphere 32.45
Stem 0
Stem Tuber 0
Unclassified 43.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10008353 3300001979 Bacteria 4130
2 JGI25154J39366_1000212 3300002738 Bacteria 40514
3 Ga0070671_100066900 3300005355 Bacteria 2995
4 Ga0070665_100173419 3300005548 Bacteria 2158
5 Ga0075365_10015815 3300006038 Bacteria 4571
6 Ga0075365_10032594 3300006038 Bacteria 3351
7 Ga0075363_100020994 3300006048 Bacteria 3282
8 Ga0075364_10006760 3300006051 Bacteria 6764
9 Ga0075364_10023607 3300006051 Bacteria 3895
10 Ga0075364_10207395 3300006051 Bacteria 1329
11 Ga0075367_10005390 3300006178 Bacteria 6346
12 Ga0075369_10046033 3300006186 Bacteria 1877
13 Ga0105244_10112232 3300009036 Bacteria 1325
14 Ga0105243_10053274 3300009148 Bacteria 3209
15 Ga0157369_10046570 3300013105 Bacteria 4713
16 Ga0157369_10110692 3300013105 Bacteria 2919
17 Ga0171462_1002 3300013250 Bacteria 1052134
18 Ga0163162_10012969 3300013306 Bacteria 8133
19 Ga0209646_1000041 3300025246 Bacteria 346024
20 Ga0207655_1003066 3300025728 Bacteria 12737
21 Ga0207647_10045605 3300025904 Bacteria 2734
22 Ga0207644_10019255 3300025931 Bacteria 4628
23 Ga0207709_10058448 3300025935 Bacteria 2396
24 Ga0207669_10128790 3300025937 Bacteria 1735
25 Ga0209813_10010051 3300027866 Bacteria 2436
26 Ga0307406_10000084 3300031901 Bacteria 52931
27 Ga0307406_10064891 3300031901 Bacteria 2371
28 Ga0307416_100183537 3300032002 Bacteria 1964
29 Ga0466965_0024941 3300044683 Bacteria 2893
30 Ga0466970_0000001 3300044765 Bacteria 252791
31 Ga0466958_0048227 3300045836 Bacteria 2573
32 Ga0495650_0063403 3300046471 Bacteria 1474
33 Ga0495650_0083249 3300046471 Bacteria 1230
34 Ga0495654_0034144 3300046530 Bacteria 2569
35 Ga0495645_0244741 3300046543 Bacteria 1195
36 Ga0495656_0052515 3300046615 Bacteria 1748
37 Ga0495672_0014178 3300047320 Bacteria 5469
38 Ga0495672_0028062 3300047320 Bacteria 3568
39 Ga0496100_0023248 3300048903 Bacteria 3763
40 Ga0496101_0004084 3300048904 Bacteria 9134
41 Ga0496102_0021921 3300048905 Bacteria 5656
42 Ga0496103_0021258 3300048906 Bacteria 3904
43 Ga0496104_0219742 3300048907 Bacteria 1812
44 Ga0496105_0074236 3300048908 Bacteria 2809
45 Ga0496107_0009986 3300048910 Bacteria 6584
46 Ga0496108_0043155 3300048911 Bacteria 3767
47 Ga0496109_0027091 3300048912 Bacteria 5115
48 Ga0496109_0138971 3300048912 Bacteria 2271
49 Ga0496110_0054838 3300048913 Bacteria 3506
50 Ga0496111_0084540 3300048914 Bacteria 2320
51 Ga0496112_0109599 3300048915 Bacteria 2731
52 Ga0496114_0039675 3300048917 Bacteria 3896
53 Ga0496114_0372215 3300048917 Bacteria 1264
54 Ga0496115_0003857 3300048918 Bacteria 10811
55 Ga0496116_0010232 3300048919 Bacteria 7889
56 Ga0496117_0000069 3300048920 Bacteria 246025
57 Ga0496117_0000607 3300048920 Bacteria 58422
58 Ga0496117_0040619 3300048920 Bacteria 3418
59 Ga0496118_0043808 3300048921 Bacteria 3513
60 Ga0496118_0123920 3300048921 Bacteria 1677
61 Ga0496119_0000644 3300048922 Bacteria 47048
62 Ga0496119_0001062 3300048922 Bacteria 35053
63 Ga0496119_0003576 3300048922 Bacteria 16049
64 Ga0496119_0016603 3300048922 Bacteria 5590
65 Ga0496119_0039529 3300048922 Bacteria 3030
66 Ga0496120_0000577 3300048923 Bacteria 55880
67 Ga0496120_0001468 3300048923 Bacteria 28087
68 Ga0496120_0002294 3300048923 Bacteria 19840
69 Ga0496122_0000022 3300048925 Bacteria 388704
70 Ga0496122_0000095 3300048925 Bacteria 200509
71 Ga0496122_0005100 3300048925 Bacteria 15848
72 Ga0496122_0024145 3300048925 Bacteria 5329
73 Ga0496123_0000016 3300048926 Bacteria 424330
74 Ga0496123_0000100 3300048926 Bacteria 170019
75 Ga0496123_0002159 3300048926 Bacteria 25133
76 Ga0496123_0021271 3300048926 Bacteria 5046
77 Ga0496124_0003177 3300048927 Bacteria 20308
78 Ga0496124_0009501 3300048927 Bacteria 10006
79 Ga0496124_0019554 3300048927 Bacteria 6296
80 Ga0496124_0027728 3300048927 Bacteria 5076
81 Ga0496125_0000326 3300048928 Bacteria 91890
82 Ga0496125_0014171 3300048928 Bacteria 7775
83 Ga0496125_0022868 3300048928 Bacteria 5791
84 Ga0496125_0064843 3300048928 Bacteria 2899
85 Ga0496125_0169793 3300048928 Bacteria 1468
86 Ga0496126_0005171 3300048929 Bacteria 15085
87 Ga0496126_0008134 3300048929 Bacteria 11353
88 Ga0496126_0048784 3300048929 Bacteria 3867
89 Ga0501038_0104472 3300049574 Bacteria 2354
90 Ga0501039_0062123 3300049575 Bacteria 2894
91 Ga0501070_0041845 3300049586 Bacteria 3815
92 Ga0501071_0002037 3300049587 Bacteria 12096
93 Ga0501073_0237893 3300049589 Bacteria 1258
94 nmdc:mga03n38_32785_c1 3300050490 Bacteria 2204
95 nmdc:mga00v17_120532_c1 3300050491 Bacteria 1670
96 nmdc:mga0yw44_13806_c1 3300050492 Bacteria 4267
97 nmdc:mga06z11_48792_c1 3300050494 Bacteria 2157
98 nmdc:mga04h51_11807_c1 3300050495 Bacteria 2435
99 nmdc:mga07m45_8159_c1 3300050496 Bacteria 4822
100 Ga0500568_0000087 3300053139 Bacteria 90384
101 Ga0500573_0058207 3300053140 Bacteria 2216
102 Ga0500616_0001382 3300053153 Bacteria 23461

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046471 Ga0495650_0063403 Ga0495650_0063403_10_876 255
2 3300046615 Ga0495656_0052515 Ga0495656_0052515_661_1644 280
3 3300005355 Ga0070671_100066900 Ga0070671_1000669002 286
4 3300025931 Ga0207644_10019255 Ga0207644_100192555 286
5 3300047320 Ga0495672_0028062 Ga0495672_0028062_759_1715 290
6 3300044683 Ga0466965_0024941 Ga0466965_0024941_31_1107 292
7 3300049586 Ga0501070_0041845 Ga0501070_0041845_859_1824 292
8 3300049587 Ga0501071_0002037 Ga0501071_0002037_4843_5808 292
9 3300049589 Ga0501073_0237893 Ga0501073_0237893_237_1202 292
10 iso_pu_bacteria 2852643534 2852643637 293
11 3300047320 Ga0495672_0014178 Ga0495672_0014178_367_1323 294
12 3300053139 Ga0500568_0000087 Ga0500568_0000087_7395_8354 294
13 3300053153 Ga0500616_0001382 Ga0500616_0001382_5945_6910 295
14 3300013105 Ga0157369_10110692 Ga0157369_101106922 296
15 3300013306 Ga0163162_10012969 Ga0163162_100129692 296
16 3300048903 Ga0496100_0023248 Ga0496100_0023248_1244_2305 296
17 3300048904 Ga0496101_0004084 Ga0496101_0004084_1449_2510 296
18 3300048905 Ga0496102_0021921 Ga0496102_0021921_4186_5247 296
19 3300048906 Ga0496103_0021258 Ga0496103_0021258_1884_2945 296
20 3300048910 Ga0496107_0009986 Ga0496107_0009986_4705_5766 296
21 3300048912 Ga0496109_0027091 Ga0496109_0027091_1889_2950 296
22 3300048913 Ga0496110_0054838 Ga0496110_0054838_569_1630 296
23 3300048915 Ga0496112_0109599 Ga0496112_0109599_62_1123 296
24 3300048917 Ga0496114_0039675 Ga0496114_0039675_1539_2600 296
25 3300048918 Ga0496115_0003857 Ga0496115_0003857_5397_6458 296
26 3300048922 Ga0496119_0039529 Ga0496119_0039529_462_1523 296
27 3300048928 Ga0496125_0064843 Ga0496125_0064843_78_1085 297
28 iso_pu_bacteria 2643221572 2643877414 298
29 iso_pu_bacteria 2643221669 2644384469 298
30 3300025728 Ga0207655_1003066 Ga0207655_10030666 300
31 iso_pu_bacteria 2857733635 2857736274 300
32 3300048927 Ga0496124_0019554 Ga0496124_0019554_993_2051 301
33 3300053140 Ga0500573_0058207 Ga0500573_0058207_850_1839 301
34 iso_pu_bacteria 2895660088 2895661770 301
35 iso_pu_bacteria 2585428094 2587862268 302
36 iso_pu_bacteria 2966924647 2966925519 302
37 3300009036 Ga0105244_10112232 Ga0105244_101122321 303
38 3300048922 Ga0496119_0000644 Ga0496119_0000644_28414_29430 303
39 3300048923 Ga0496120_0000577 Ga0496120_0000577_19465_20481 303
40 iso_pu_bacteria 2643221649 2644279911 303
41 iso_pu_bacteria 2773857759 2774383032 303
42 iso_pu_bacteria 2808606447 2809228343 303
43 iso_pu_bacteria 2852632344 2852635005 303
44 3300048920 Ga0496117_0000069 Ga0496117_0000069_201019_202038 304
45 3300048923 Ga0496120_0002294 Ga0496120_0002294_10137_11156 304
46 3300048925 Ga0496122_0005100 Ga0496122_0005100_12361_13380 304
47 3300048926 Ga0496123_0002159 Ga0496123_0002159_10068_11087 304
48 3300048927 Ga0496124_0027728 Ga0496124_0027728_3100_4119 304
49 3300048928 Ga0496125_0014171 Ga0496125_0014171_4591_5610 304
50 3300048929 Ga0496126_0008134 Ga0496126_0008134_9995_11014 304
51 iso_pu_bacteria 2808606372 2808899472 304
52 iso_pu_bacteria 2857729791 2857731955 304
53 iso_pu_bacteria 2928121344 2928124182 304
54 3300013105 Ga0157369_10046570 Ga0157369_100465705 305
55 3300045836 Ga0466958_0048227 Ga0466958_0048227_62_1057 305
56 3300046471 Ga0495650_0083249 Ga0495650_0083249_13_1026 305
57 3300049574 Ga0501038_0104472 Ga0501038_0104472_479_1474 305
58 iso_pu_bacteria 2852646457 2852648448 305
59 iso_pu_bacteria 2919395869 2919397798 305
60 iso_pu_bacteria 2945968032 2945970691 305
61 iso_pu_bacteria 2977251589 2977253225 305
62 3300002738 JGI25154J39366_1000212 JGI25154J39366_100021230 306
63 3300006051 Ga0075364_10207395 Ga0075364_102073952 306
64 3300025246 Ga0209646_1000041 Ga0209646_1000041222 306
65 iso_pu_bacteria 2643221597 2643996712 306
66 iso_pu_bacteria 2852632344 2852635633 306
67 3300048919 Ga0496116_0010232 Ga0496116_0010232_366_1376 307
68 3300048921 Ga0496118_0123920 Ga0496118_0123920_174_1184 307
69 3300048922 Ga0496119_0016603 Ga0496119_0016603_752_1762 307
70 3300048923 Ga0496120_0001468 Ga0496120_0001468_18875_19885 307
71 3300048925 Ga0496122_0000022 Ga0496122_0000022_120283_121293 307
72 3300048926 Ga0496123_0000016 Ga0496123_0000016_167230_168240 307
73 3300048927 Ga0496124_0009501 Ga0496124_0009501_3602_4612 307
74 3300048929 Ga0496126_0005171 Ga0496126_0005171_5715_6725 307
75 iso_pu_bacteria 2643221566 2643846640 307
76 iso_pu_bacteria 2862993130 2862994348 307
77 iso_pu_bacteria 2906799679 2906801723 307
78 3300025904 Ga0207647_10045605 Ga0207647_100456052 308
79 3300046543 Ga0495645_0244741 Ga0495645_0244741_81_1130 308
80 3300048907 Ga0496104_0219742 Ga0496104_0219742_357_1406 308
81 3300048908 Ga0496105_0074236 Ga0496105_0074236_828_1877 308
82 3300048911 Ga0496108_0043155 Ga0496108_0043155_63_1112 308
83 3300048912 Ga0496109_0138971 Ga0496109_0138971_723_1772 308
84 3300048914 Ga0496111_0084540 Ga0496111_0084540_661_1710 308
85 3300048917 Ga0496114_0372215 Ga0496114_0372215_164_1213 308
86 iso_pu_bacteria 2585428157 2588108071 308
87 iso_pu_bacteria 2808606306 2808630071 308
88 iso_pu_bacteria 2833709550 2833712098 308
89 3300001979 JGI24740J21852_10008353 JGI24740J21852_100083533 309
90 3300005548 Ga0070665_100173419 Ga0070665_1001734191 309
91 3300006038 Ga0075365_10015815 Ga0075365_100158152 309
92 3300006038 Ga0075365_10032594 Ga0075365_100325942 309
93 3300006048 Ga0075363_100020994 Ga0075363_1000209942 309
94 3300006051 Ga0075364_10006760 Ga0075364_100067607 309
95 3300006051 Ga0075364_10023607 Ga0075364_100236072 309
96 3300006178 Ga0075367_10005390 Ga0075367_100053906 309
97 3300006186 Ga0075369_10046033 Ga0075369_100460331 309
98 3300009148 Ga0105243_10053274 Ga0105243_100532742 309
99 3300013250 Ga0171462_1002 Ga0171462_1002848 309
100 3300025935 Ga0207709_10058448 Ga0207709_100584482 309
101 3300025937 Ga0207669_10128790 Ga0207669_101287902 309
102 3300027866 Ga0209813_10010051 Ga0209813_100100512 309
103 3300031901 Ga0307406_10000084 Ga0307406_1000008416 309
104 3300031901 Ga0307406_10064891 Ga0307406_100648914 309
105 3300032002 Ga0307416_100183537 Ga0307416_1001835372 309
106 3300044765 Ga0466970_0000001 Ga0466970_0000001_95697_96689 309
107 3300046530 Ga0495654_0034144 Ga0495654_0034144_117_1247 309
108 3300048920 Ga0496117_0000607 Ga0496117_0000607_48815_49876 309
109 3300048920 Ga0496117_0040619 Ga0496117_0040619_523_1560 309
110 3300048921 Ga0496118_0043808 Ga0496118_0043808_897_1958 309
111 3300048922 Ga0496119_0001062 Ga0496119_0001062_13764_14825 309
112 3300048922 Ga0496119_0003576 Ga0496119_0003576_1205_2299 309
113 3300048925 Ga0496122_0000095 Ga0496122_0000095_129292_130353 309
114 3300048925 Ga0496122_0024145 Ga0496122_0024145_3285_4322 309
115 3300048926 Ga0496123_0000100 Ga0496123_0000100_39639_40700 309
116 3300048926 Ga0496123_0021271 Ga0496123_0021271_896_1933 309
117 3300048927 Ga0496124_0003177 Ga0496124_0003177_5800_6861 309
118 3300048928 Ga0496125_0000326 Ga0496125_0000326_27514_28566 309
119 3300048928 Ga0496125_0022868 Ga0496125_0022868_4033_5094 309
120 3300048928 Ga0496125_0169793 Ga0496125_0169793_176_1213 309
121 3300048929 Ga0496126_0048784 Ga0496126_0048784_2640_3701 309
122 3300049575 Ga0501039_0062123 Ga0501039_0062123_163_1239 309
123 3300050490 nmdc:mga03n38_32785_c1 nmdc:mga03n38_32785_c1_13_1098 309
124 3300050491 nmdc:mga00v17_120532_c1 nmdc:mga00v17_120532_c1_292_1314 309
125 3300050492 nmdc:mga0yw44_13806_c1 nmdc:mga0yw44_13806_c1_1894_2979 309
126 3300050494 nmdc:mga06z11_48792_c1 nmdc:mga06z11_48792_c1_1019_2104 309
127 3300050495 nmdc:mga04h51_11807_c1 nmdc:mga04h51_11807_c1_815_1900 309
128 3300050496 nmdc:mga07m45_8159_c1 nmdc:mga07m45_8159_c1_1776_2861 309
129 iso_pu_bacteria 2643221546 2643754015 309
130 iso_pu_bacteria 2643221575 2643886598 309
131 iso_pu_bacteria 2757320536 2758227614 309
132 iso_pu_bacteria 2773857758 2774381184 309
133 iso_pu_bacteria 2773857763 2774398344 309
134 iso_pu_bacteria 2808606368 2808883679 309
135 iso_pu_bacteria 2811994872 2812324368 309
136 iso_pu_bacteria 2821268502 2821271083 309
137 iso_pu_bacteria 2857720070 2857720909 309
138 iso_pu_bacteria 2870628048 2870631378 309
139 iso_pu_bacteria 2904509784 2904510943 309
140 iso_pu_bacteria 2908678064 2908680322 309
141 iso_pu_bacteria 2919069694 2919072719 309
142 iso_pu_bacteria 2928090899 2928092745 309
143 iso_pu_bacteria 2974294766 2974296258 309
144 iso_pu_bacteria 2974324384 2974327507 309
145 iso_pu_bacteria 2977228692 2977229127 309
146 iso_pu_bacteria 2977236895 2977238837 309
147 iso_pu_bacteria 2977264416 2977267883 309
148 iso_pu_bacteria 2984542743 2984543380 309
149 iso_pu_bacteria 2984580707 2984583706 309
150 iso_pu_bacteria 8016254467 8016256490 309
151 iso_pu_bacteria 8045830549 8045834000 309

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01578

Cytochrom_C_asm

Cytochrome C assembly protein

114

360

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.7594 5 291
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.6731 1 307
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.6439 1 307
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.6411 5 291
7f02-assembly1.cif.gz_C cytochrome c-type biogenesis protein ccmabcd from e. coli 0.5264 93 304
ID Description Score Start End Superfamily
af_A4HXM2_942_1093_1.20.120.350 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5999 28 137 1.20.120.350
5ek0C01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5812 168 293 1.20.120.350
5ek0B01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.562 173 293 1.20.120.350
af_A0A1D6MCX1_7_216_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.5539 144 307 1.20.120.1770
1y4cA03 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);IL-4 antagonist (De novo design) like domain 0.5459 9 136 1.20.120.660
ID Description Score Start End GO Terms
AF-A0A132NIX1-F1-model_v4 Cytochrome C biogenesis protein 0.9571 87 308 GO:0005886
GO:0017004
GO:0020037
AF-A0A3S0TNT0-F1-model_v4 deleted 0.9561 72 309
AF-A0A1R4IAS0-F1-model_v4 deleted 0.9495 51 309
AF-A0A132NIX1-F1-model_v4 Cytochrome C biogenesis protein 0.9486 87 308 GO:0005886
GO:0017004
GO:0020037
AF-A0A7X8CZT2-F1-model_v4 Cytochrome c biogenesis protein CcsA 0.9483 3 177 GO:0005886
GO:0017004
GO:0020037

Feature Viewer

pLDDT pTM Quality
87.14 0.87 High
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Predicted Structure (AlphaFold2)

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