F212320

General Info

Members Datasets Scaffolds Average Seq Length
151 113 294 1041

Family's Representative Sequence

Representative Sequence 3300044656|Ga0466969_0000016|Ga0466969_0000016_98898_102086
Length 1062
Sequence MNRVIDFALKQRVLVVVLMALVFVGGALAFWRLNIEAYPDPVPPMVDIVTQSTGQSAEEIERYVTIPIEVQMAGIPHVTSVRTISMFGLSDVKLQFTYDFTYEQAEQWVTNRLSQLPALPNGAQAQISPTSPIGEIYRYRLVGPPGFPVTDLKTLQDWVLQRRFKAVPGVIDVTGWGGKTKTYDVTVDQQRLRSQGVSLNQVLQAIANSNVNVGAQTLNIGPQAVVVRGVGLMRSVDDLLDTLVARNAGVPVRLRDVANVGMGHQPRLGIAGHDGDDDIVEGIVLMRRGAESKPTIERVKAEIDKINRSSILPPGVRLEKVYDRSDLIDLTTHTVLHNMVVGVLLIFLLQWAFLGNLRSAVVVAATIPFALSFAIGLMVLRGESANLLSMGAIDFGLIVDASVIMVENIFRHLSESAAARHEGEPALHRMRTSMGWRGRFDVIAQSAAEVSQPILFSATIIIAGFVPLFTLSGIEGHIFGPMAKTYAYAIAGGILATFTVSPALSTFLFSGELSEKETWLVRFIRRRYVPLIGPILARRRWVAGGVLVALAIAGVAASRLGMEFLPTLEEGNLWIRATMPLSISLEESDGYVNEMRRLIRRYPEVDTAVSQHGRPDDGTDVSGFFNAEFFVPLKPQSQWPAGVTKESLSAQMAHELEEHFPGVEFNFSQYIQDNVEEAASGVKGENSVKVFGPDLKTLEKTARAIEAVLKTVPGVTDLAVFRSLGQPTLQITVDRQRAAHYGLAPGDVTAVVQAAIGGQSAGELYETGSDRHFPIVVRLAPEYRTDLDAIRRIPIAAPDPSGNGTVQVPLGDVATLSLVSGPSFIYREQQERYVPVKFGVRGRDLGTAVLEAQRKVTEQVHLPPGYRLEWVGQFGNLQDALQRLAVAVPAAIGLIALLLYLHFGRVREVLLAASVIPMALIGGVLALALTGTPFSVSAAIGFIALFGIAAMDGILMLAYFNQHVEAGMPRRRALHHMCSVQLRPVLMTCIVACVGLIPAAVSTGIGSQVQKPLALVVVGGILLAPLFILTVMPVLIDRFSRRAPIEPAPEGEPRPDAAGDAV

Samples

Sample ID Description Type Environment
1 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
4 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
5 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
20 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
28 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
33 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
34 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
48 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
49 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
50 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
53 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
54 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
60 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
61 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
62 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
63 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
64 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
65 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
66 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
67 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
68 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
69 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
70 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
71 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
72 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
73 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
74 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
75 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
80 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
81 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
84 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
85 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
86 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
87 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
88 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
89 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
90 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
91 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
92 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
93 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
94 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
95 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
96 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
97 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
98 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
99 2902330777 Methylobacterium sp. 2A Isolate Unclassified
100 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
101 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
102 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
103 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
104 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
105 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
106 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
107 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
108 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
109 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
110 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
111 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
112 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
113 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.47
Metatranscriptomes 0
Isolates 20.53

Biome Distribution

Category Percentage (%)
Aerial Root 3.31
Bulb 0
Endosphere 7.95
Nodule 0
Rhizoplane 1.32
Rhizosphere 65.56
Stem 0
Stem Tuber 0
Unclassified 0.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466969_0000016 3300044656 Bacteria 106431
2 JGI25165J46597_1000109 3300003214 Bacteria 149484
3 Ga0055525_1000076 3300003759 Bacteria 168820
4 Ga0055535_1000088 3300003761 Bacteria 102543
5 Ga0055529_1000192 3300003763 Bacteria 83714
6 Ga0055529_1000734 3300003763 Bacteria 21310
7 Ga0070658_10000083 3300005327 Bacteria 89189
8 Ga0070670_100034491 3300005331 Bacteria 4354
9 Ga0070671_100000198 3300005355 Bacteria 40255
10 Ga0070697_100015167 3300005536 Bacteria 6051
11 Ga0068853_100001383 3300005539 Bacteria 17519
12 Ga0070665_100000538 3300005548 Bacteria 53355
13 Ga0070665_100004413 3300005548 Bacteria 14779
14 Ga0068855_100000456 3300005563 Bacteria 50301
15 Ga0068854_100001947 3300005578 Bacteria 12604
16 Ga0068856_100001509 3300005614 Bacteria 24390
17 Ga0068852_100000169 3300005616 Bacteria 43882
18 Ga0068852_100012139 3300005616 Bacteria 6525
19 Ga0068863_100014300 3300005841 Bacteria 7644
20 Ga0068858_100005754 3300005842 Bacteria 12112
21 Ga0068860_100020894 3300005843 Bacteria 6342
22 Ga0068860_100032450 3300005843 Bacteria 5018
23 Ga0099794_10010347 3300007265 Bacteria 3957
24 Ga0105251_10001150 3300009011 Bacteria 23013
25 Ga0105240_10000420 3300009093 Bacteria 78578
26 Ga0105240_10004024 3300009093 Bacteria 22626
27 Ga0105247_10000555 3300009101 Bacteria 30366
28 Ga0105237_10000580 3300009545 Bacteria 51217
29 Ga0105238_10002561 3300009551 Bacteria 18161
30 Ga0105249_10017040 3300009553 Bacteria 6448
31 Ga0163162_10042801 3300013306 Bacteria 4534
32 Ga0157379_10008703 3300014968 Bacteria 8843
33 Ga0213872_10000506 3300021361 Bacteria 30830
34 Ga0213872_10004264 3300021361 Bacteria 7661
35 Ga0213875_10006678 3300021388 Bacteria 6026
36 Ga0209563_100019 3300025230 Bacteria 697828
37 Ga0209258_100025 3300025242 Bacteria 534777
38 Ga0209759_1000851 3300025256 Bacteria 23745
39 Ga0209233_1000167 3300025261 Bacteria 149536
40 Ga0209455_1000112 3300025272 Bacteria 186237
41 Ga0207713_1001300 3300025735 Bacteria 20534
42 Ga0207710_10002836 3300025900 Bacteria 7897
43 Ga0207680_10024552 3300025903 Bacteria 3310
44 Ga0207705_10000009 3300025909 Bacteria 576128
45 Ga0207695_10005656 3300025913 Bacteria 16499
46 Ga0207695_10007796 3300025913 Bacteria 13556
47 Ga0207695_10009912 3300025913 Bacteria 11706
48 Ga0207671_10035067 3300025914 Bacteria 3726
49 Ga0207681_10000723 3300025923 Bacteria 21682
50 Ga0207667_10011148 3300025949 Bacteria 10464
51 Ga0207640_10000698 3300025981 Bacteria 19549
52 Ga0207641_10019287 3300026088 Bacteria 5596
53 Ga0207698_10003432 3300026142 Bacteria 9539
54 Ga0268266_10000499 3300028379 Bacteria 56016
55 Ga0265323_10001863 3300028653 Bacteria 9980
56 Ga0265324_10000073 3300029957 Bacteria 79760
57 Ga0265324_10000098 3300029957 Bacteria 68219
58 Ga0307511_10001581 3300030521 Bacteria 24145
59 Ga0265330_10004422 3300031235 Bacteria 7134
60 Ga0265325_10001500 3300031241 Bacteria 16405
61 Ga0265325_10006299 3300031241 Bacteria 7219
62 Ga0265329_10000119 3300031242 Bacteria 37113
63 Ga0265340_10000366 3300031247 Bacteria 23979
64 Ga0265339_10000043 3300031249 Bacteria 118741
65 Ga0265339_10000082 3300031249 Bacteria 81791
66 Ga0265331_10004880 3300031250 Bacteria 8250
67 Ga0265331_10009675 3300031250 Bacteria 5395
68 Ga0265316_10000382 3300031344 Bacteria 50404
69 Ga0265316_10002797 3300031344 Bacteria 17875
70 Ga0265316_10005954 3300031344 Bacteria 11741
71 Ga0265313_10002509 3300031595 Bacteria 15787
72 Ga0265313_10009060 3300031595 Bacteria 6516
73 Ga0265314_10000298 3300031711 Bacteria 71265
74 Ga0265314_10001047 3300031711 Bacteria 32267
75 Ga0265314_10001190 3300031711 Bacteria 29854
76 Ga0265342_10000126 3300031712 Bacteria 84944
77 Ga0265342_10000250 3300031712 Bacteria 60252
78 Ga0307412_10002282 3300031911 Bacteria 10618
79 Ga0307412_10005100 3300031911 Bacteria 7347
80 Ga0436364_0401506 3300037853 Bacteria 30708
81 Ga0436361_0313273 3300039447 Unclassified 3082
82 Ga0436361_0631432 3300039447 Bacteria 13951
83 Ga0436361_1080031 3300039447 Bacteria 5221
84 Ga0436361_1091519 3300039447 Bacteria 12485
85 Ga0436363_0012202 3300039450 Bacteria 7026
86 Ga0466969_0002861 3300044656 Bacteria 9218
87 Ga0466966_0001429 3300044684 Bacteria 15355
88 Ga0466966_0014552 3300044684 Bacteria 5207
89 Ga0466961_0002883 3300044693 Bacteria 10667
90 Ga0466968_0008145 3300044735 Bacteria 4007
91 Ga0466959_0004662 3300045049 Bacteria 9226
92 Ga0466959_0016142 3300045049 Bacteria 5451
93 Ga0451576_0031239 3300045051 Bacteria 5681
94 Ga0495686_0000435 3300047472 Bacteria 64544
95 Ga0495686_0000837 3300047472 Bacteria 39485
96 Ga0496118_0020978 3300048921 Bacteria 5770
97 Ga0496121_0000061 3300048924 Bacteria 275757
98 Ga0496121_0000293 3300048924 Bacteria 103372
99 Ga0496121_0001394 3300048924 Bacteria 40889
100 Ga0496121_0002726 3300048924 Bacteria 26350
101 Ga0496121_0007405 3300048924 Bacteria 13267
102 Ga0496122_0000092 3300048925 Bacteria 204463
103 Ga0496123_0000089 3300048926 Bacteria 179941
104 Ga0496126_0002252 3300048929 Bacteria 26621
105 Ga0501033_0009167 3300049570 Bacteria 7626
106 Ga0501034_0003977 3300049571 Bacteria 16610
107 Ga0501034_0034409 3300049571 Bacteria 5136
108 Ga0501046_0028009 3300049580 Bacteria 4591
109 Ga0501047_0026191 3300049581 Bacteria 5609
110 Ga0501070_0013753 3300049586 Bacteria 6816
111 Ga0501073_0013341 3300049589 Bacteria 5982
112 Ga0501079_0010591 3300049741 Bacteria 7015
113 Ga0501044_0004913 3300049823 Bacteria 14943
114 Ga0500555_000201 3300053103 Bacteria 27834
115 Ga0500636_0001551 3300053177 Bacteria 12516
116 Ga0500636_0010808 3300053177 Bacteria 5335
117 2596372678 2595698237 Bacteria 6712432
118 2596376828 2595698237 Bacteria 6712432
119 2600201257 2599185354 Bacteria 4398675
120 2600226815 2599185359 Bacteria 4772316
121 2738712318 2738541275 Bacteria 4830863
122 2738746451 2738541281 Bacteria 5112672
123 2738850743 2738541301 Bacteria 4834102
124 2738866472 2738541304 Bacteria 4833665
125 2739298990 2738543022 Bacteria 4835059
126 2739355681 2738543032 Bacteria 5115625
127 2739360668 2738543033 Bacteria 4833336
128 2753767503 2751185897 Bacteria 5322941
129 2819715739 2818991466 Bacteria 4748179
130 2879163790 2879163058 Bacteria 4223965
131 2889310185 2889306138 Bacteria 6358934
132 2902333970 2902330777 Bacteria 6395352
133 2902334475 2902330777 Bacteria 6395352
134 2902410805 2902405164 Bacteria 6784948
135 2928029109 2928027323 Bacteria 4382488
136 2928103355 2928100450 Bacteria 4837635
137 2928127527 2928125067 Bacteria 5937560
138 2928529754 2928526807 Bacteria 4760224
139 2928962563 2928959182 Bacteria 4725774
140 2928970754 2928968154 Bacteria 4633371
141 2984556071 2984555340 Bacteria 4247089
142 2984565822 2984564862 Bacteria 4339992
143 2990267903 2990265787 Bacteria 3943888
144 2993356832 2993356040 Bacteria 4247105
145 2993697079 2993693658 Bacteria 4040749
146 3003667616 3003665799 Bacteria 7279786
147 8057103157 8057101203 Bacteria 5034064
148 Ga0466969_0000016
149 JGI25165J46597_1000109
150 Ga0055525_1000076
151 Ga0055535_1000088
152 Ga0055529_1000192
153 Ga0055529_1000734
154 Ga0070658_10000083
155 Ga0070670_100034491
156 Ga0070671_100000198
157 Ga0070697_100015167
158 Ga0068853_100001383
159 Ga0070665_100000538
160 Ga0070665_100004413
161 Ga0068855_100000456
162 Ga0068854_100001947
163 Ga0068856_100001509
164 Ga0068852_100000169
165 Ga0068852_100012139
166 Ga0068863_100014300
167 Ga0068858_100005754
168 Ga0068860_100020894
169 Ga0068860_100032450
170 Ga0099794_10010347
171 Ga0105251_10001150
172 Ga0105240_10000420
173 Ga0105240_10004024
174 Ga0105247_10000555
175 Ga0105237_10000580
176 Ga0105238_10002561
177 Ga0105249_10017040
178 Ga0163162_10042801
179 Ga0157379_10008703
180 Ga0213872_10000506
181 Ga0213872_10004264
182 Ga0213875_10006678
183 Ga0209563_100019
184 Ga0209258_100025
185 Ga0209759_1000851
186 Ga0209233_1000167
187 Ga0209455_1000112
188 Ga0207713_1001300
189 Ga0207710_10002836
190 Ga0207680_10024552
191 Ga0207705_10000009
192 Ga0207695_10005656
193 Ga0207695_10007796
194 Ga0207695_10009912
195 Ga0207671_10035067
196 Ga0207681_10000723
197 Ga0207667_10011148
198 Ga0207640_10000698
199 Ga0207641_10019287
200 Ga0207698_10003432
201 Ga0268266_10000499
202 Ga0265323_10001863
203 Ga0265324_10000073
204 Ga0265324_10000098
205 Ga0307511_10001581
206 Ga0265330_10004422
207 Ga0265325_10001500
208 Ga0265325_10006299
209 Ga0265329_10000119
210 Ga0265340_10000366
211 Ga0265339_10000043
212 Ga0265339_10000082
213 Ga0265331_10004880
214 Ga0265331_10009675
215 Ga0265316_10000382
216 Ga0265316_10002797
217 Ga0265316_10005954
218 Ga0265313_10002509
219 Ga0265313_10009060
220 Ga0265314_10000298
221 Ga0265314_10001047
222 Ga0265314_10001190
223 Ga0265342_10000126
224 Ga0265342_10000250
225 Ga0307412_10002282
226 Ga0307412_10005100
227 Ga0436364_0401506
228 Ga0436361_0313273
229 Ga0436361_0631432
230 Ga0436361_1080031
231 Ga0436361_1091519
232 Ga0436363_0012202
233 Ga0466969_0002861
234 Ga0466966_0001429
235 Ga0466966_0014552
236 Ga0466961_0002883
237 Ga0466968_0008145
238 Ga0466959_0004662
239 Ga0466959_0016142
240 Ga0451576_0031239
241 Ga0495686_0000435
242 Ga0495686_0000837
243 Ga0496118_0020978
244 Ga0496121_0000061
245 Ga0496121_0000293
246 Ga0496121_0001394
247 Ga0496121_0002726
248 Ga0496121_0007405
249 Ga0496122_0000092
250 Ga0496123_0000089
251 Ga0496126_0002252
252 Ga0501033_0009167
253 Ga0501034_0003977
254 Ga0501034_0034409
255 Ga0501046_0028009
256 Ga0501047_0026191
257 Ga0501070_0013753
258 Ga0501073_0013341
259 Ga0501079_0010591
260 Ga0501044_0004913
261 Ga0500555_000201
262 Ga0500636_0001551
263 Ga0500636_0010808
264 2596372678
265 2596376828
266 2600201257
267 2600226815
268 2738712318
269 2738746451
270 2738850743
271 2738866472
272 2739298990
273 2739355681
274 2739360668
275 2753767503
276 2819715739
277 2879163790
278 2889310185
279 2902333970
280 2902334475
281 2902410805
282 2928029109
283 2928103355
284 2928127527
285 2928529754
286 2928962563
287 2928970754
288 2984556071
289 2984565822
290 2990267903
291 2993356832
292 2993697079
293 3003667616
294 8057103157

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

4

1039

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4k0j-assembly2.cif.gz_F x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.9591 5 1028
4k0j-assembly2.cif.gz_D x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.9566 5 1035
4k0e-assembly1.cif.gz_A x-ray crystal structure of a heavy metal efflux pump, crystal form ii 0.956 5 1030
4k0e-assembly1.cif.gz_B x-ray crystal structure of a heavy metal efflux pump, crystal form ii 0.955 4 1028
4k0j-assembly2.cif.gz_E x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.9547 5 1028
ID Description Score Start End Superfamily
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9749 46 111 3.30.70.1430
af_Q2FVZ5_39_104_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9717 44 102 3.30.70.1430
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9541 885 1030 1.20.1640.10
3w9iC05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9423 882 1028 1.20.1640.10
af_P38054_878_1046_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9397 885 1030 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A543KTB1-F1-model_v4 AcrB/AcrD/AcrF family protein 0.9735 885 1030 GO:0005886
GO:0042910
AF-A0A2D4S4Z8-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9694 468 1028 GO:0005886
GO:0008324
GO:0042910
AF-A0A353PEH8-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9693 848 1034 GO:0005886
GO:0042910
AF-X1G9Y5-F1-model_v4 Efflux RND transporter permease subunit 0.9655 679 1000 GO:0005886
GO:0042910
AF-A0A7Z9PSH6-F1-model_v4 Efflux RND transporter permease subunit 0.9653 1 1030 GO:0005886
GO:0008324
GO:0042910

Map