F209825
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 150 | 128 | 300 | 481 |
Family's Representative Sequence
| Representative Sequence | 3300048928|Ga0496125_0000094|Ga0496125_0000094_12523_14034 |
| Length | 503 |
| Sequence | MAPGSTTVGIACHGHFAHSGLVAITIDRRINGQRLRVLLGAWHRPGPAYQALADALRALTRSGALPLGTRLPGERETADALGVSRTTATAAYDLLRDEGFLVSRRGSGTVTTLPPGSGDRAPSSLGTVDGTLVDLTAAAPAAPPRLATACAAALDQLPRHLAGAGYAPLGLPALRAAVAERYTRRGVPTTPDQVLVTTGAQQAIHLLTGALAGTGDRVVVEHPTYPHAVDAVRAAGARPVPVPVTSAGTDLDLLEATVRQTAPRLAYLVPDHHNPTGTSLTTEGRARVRELARRTRTVVVGDETLTDLTIDGPQPSPFAGDGLADRYVVSVGSASKSFWGGLRVGWVRAHPDLVGALAQRRAHVDIATSVLDQLVTAELLACADEVLVQRRAVLREQRDALLAMLAHDLPQWHVPVPAGGLSTWVDLGRPVATALSALAHGHGVRIAPGTAFGVDGTFDDHLRVPFSQPVEALRRAVDGLTAAWSVLAGTPSDRVGVAQPALV |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 2 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 3 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 4 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 12 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 13 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 14 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 16 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 18 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 19 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 20 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 21 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 22 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 23 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 24 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 25 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 26 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 27 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 28 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 30 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 31 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 32 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 33 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 34 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 35 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 36 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 38 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 51 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 53 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 54 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 55 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 56 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 57 | 3300041405 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 | Metagenome | Rhizosphere |
| 58 | 3300041498 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG | Metagenome | Unclassified |
| 59 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 60 | 3300042010 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 | Metagenome | Rhizosphere |
| 61 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 62 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 63 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 64 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 65 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 66 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 67 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 68 | 3300047323 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 70 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 71 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 72 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 73 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 74 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 75 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 76 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 77 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 78 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 79 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 80 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 81 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 82 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 83 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 84 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 85 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 86 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 87 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 88 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 90 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 91 | 3300053157 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere | Metagenome | Endosphere |
| 92 | 2515154155 | Actinopolymorpha alba DSM 45243 | Isolate | Rhizosphere |
| 93 | 2547132424 | Nocardia nova SH22a | Isolate | Unclassified |
| 94 | 2551306166 | Nocardia tenerifensis NBRC 101015 | Isolate | Rhizosphere |
| 95 | 2643221613 | Oerskovia sp. Root22 | Isolate | Unclassified |
| 96 | 2643221681 | Aeromicrobium sp. Root472D3 | Isolate | Unclassified |
| 97 | 2643221690 | Cellulomonas sp. Root485 | Isolate | Unclassified |
| 98 | 2643221692 | Nocardia sp. Root136 | Isolate | Unclassified |
| 99 | 2643221694 | Cellulomonas sp. Root137 | Isolate | Unclassified |
| 100 | 2643221721 | Oerskovia sp. Root918 | Isolate | Unclassified |
| 101 | 2643221722 | Cellulomonas sp. Root930 | Isolate | Unclassified |
| 102 | 2643221961 | Aeromicrobium sp. Root236 | Isolate | Unclassified |
| 103 | 2643221962 | Aeromicrobium sp. Root344 | Isolate | Unclassified |
| 104 | 2738541272 | Promicromonospora sp. AC04 | Isolate | Unclassified |
| 105 | 2738543027 | Promicromonospora sp. CF082 | Isolate | Unclassified |
| 106 | 2738543034 | Rhodococcus sp. OK269 | Isolate | Unclassified |
| 107 | 2739367654 | Promicromonospora sp. YR516 | Isolate | Unclassified |
| 108 | 2758568522 | Promicromonospora thailandica SAI-039 | Isolate | Unclassified |
| 109 | 2758568621 | Promicromonospora sukumoe SAI-064 | Isolate | Unclassified |
| 110 | 2775506925 | Saccharopolyspora phatthalungensis NRRL B-24798 | Isolate | Rhizosphere |
| 111 | 2791355275 | Enterobacter sp. Sa187 | Isolate | Unclassified |
| 112 | 2808606394 | Promicromonospora sp. C35 | Isolate | Unclassified |
| 113 | 2811994880 | Cellulomonas sp. SLBN-39 | Isolate | Unclassified |
| 114 | 2863067949 | Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) | Isolate | Rhizosphere |
| 115 | 2884994152 | Cellulomonas sp. H30R-01 | Isolate | Rhizosphere |
| 116 | 2904765812 | Rhodococcus fascians 1590 | Isolate | Rhizosphere |
| 117 | 2904770941 | Rhodococcus fascians 1339 | Isolate | Rhizosphere |
| 118 | 2908811453 | Rhodococcus sp. 1R11 | Isolate | Unclassified |
| 119 | 2919420072 | Rhodococcus fascians 3241 | Isolate | Rhizosphere |
| 120 | 2919432681 | Rhodococcus sp. 3258 | Isolate | Rhizosphere |
| 121 | 2919713450 | Nocardia kruczakiae 4272 | Isolate | Rhizosphere |
| 122 | 2932431166 | Cellulosimicrobium sp. 4261 | Isolate | Rhizosphere |
| 123 | 2935890801 | Oerskovia enterophila 3230 | Isolate | Rhizosphere |
| 124 | 2974315732 | Rhodococcus sp. SORGH_AS 301 | Isolate | Unclassified |
| 125 | 2984523437 | Rhodococcus sp. SORGH_AS303 | Isolate | Aerial Root |
| 126 | 8002775197 | Frankia nepalensis CN7 | Isolate | Nodule |
| 127 | 8056207758 | Saccharopolyspora indica KCTC 29208 | Isolate | Rhizosphere |
| 128 | 8056579771 | Promicromonospora iranensis UTMC 00792 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 75.33 |
| Metatranscriptomes | 0 |
| Isolates | 24.67 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.67 |
| Bulb | 0 |
| Endosphere | 6.67 |
| Nodule | 2 |
| Rhizoplane | 17.33 |
| Rhizosphere | 55.33 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0496125_0000094 | 3300048928 | Bacteria | 208341 |
| 2 | Ga0070683_100022656 | 3300005329 | Bacteria | 5617 |
| 3 | Ga0070682_100000691 | 3300005337 | Bacteria | 20383 |
| 4 | Ga0070660_100039735 | 3300005339 | Bacteria | 3577 |
| 5 | Ga0070661_100166762 | 3300005344 | Bacteria | 1671 |
| 6 | Ga0070659_100020420 | 3300005366 | Bacteria | 5031 |
| 7 | Ga0070667_100030979 | 3300005367 | Bacteria | 4460 |
| 8 | Ga0070714_100013605 | 3300005435 | Bacteria | 6524 |
| 9 | Ga0070705_100075035 | 3300005440 | Bacteria | 2058 |
| 10 | Ga0070685_10041559 | 3300005466 | Bacteria | 2620 |
| 11 | Ga0070679_100128010 | 3300005530 | Bacteria | 2521 |
| 12 | Ga0070684_100001882 | 3300005535 | Bacteria | 15377 |
| 13 | Ga0068853_100043781 | 3300005539 | Bacteria | 3830 |
| 14 | Ga0070693_100020039 | 3300005547 | Bacteria | 3520 |
| 15 | Ga0070704_100137742 | 3300005549 | Bacteria | 1901 |
| 16 | Ga0070664_100115704 | 3300005564 | Bacteria | 2344 |
| 17 | Ga0068857_100020175 | 3300005577 | Bacteria | 5859 |
| 18 | Ga0068856_100137528 | 3300005614 | Bacteria | 2449 |
| 19 | Ga0068864_100016959 | 3300005618 | Bacteria | 6067 |
| 20 | Ga0068866_10029537 | 3300005718 | Bacteria | 2623 |
| 21 | Ga0075365_10000431 | 3300006038 | Bacteria | 15544 |
| 22 | Ga0075365_10004075 | 3300006038 | Bacteria | 7673 |
| 23 | Ga0075363_100021505 | 3300006048 | Bacteria | 3251 |
| 24 | Ga0075370_10042715 | 3300006353 | Bacteria | 2561 |
| 25 | Ga0079104_1000248 | 3300006946 | Bacteria | 72191 |
| 26 | Ga0105245_10004104 | 3300009098 | Bacteria | 12931 |
| 27 | Ga0105242_10013375 | 3300009176 | Bacteria | 6339 |
| 28 | Ga0105238_10048575 | 3300009551 | Bacteria | 4276 |
| 29 | Ga0105239_10001015 | 3300010375 | Bacteria | 39219 |
| 30 | Ga0105246_10062539 | 3300011119 | Bacteria | 2594 |
| 31 | Ga0157369_10067049 | 3300013105 | Bacteria | 3860 |
| 32 | Ga0157378_10021303 | 3300013297 | Bacteria | 5699 |
| 33 | Ga0163162_10020305 | 3300013306 | Bacteria | 6525 |
| 34 | Ga0157372_10007574 | 3300013307 | Bacteria | 11545 |
| 35 | Ga0157372_10028157 | 3300013307 | Bacteria | 6130 |
| 36 | Ga0157372_10059437 | 3300013307 | Bacteria | 4275 |
| 37 | Ga0157375_10052633 | 3300013308 | Bacteria | 4003 |
| 38 | Ga0157375_10270290 | 3300013308 | Bacteria | 1862 |
| 39 | Ga0163163_10022224 | 3300014325 | Bacteria | 6001 |
| 40 | Ga0157377_10092811 | 3300014745 | Bacteria | 1785 |
| 41 | Ga0182006_1000020 | 3300015261 | Bacteria | 285318 |
| 42 | Ga0207642_10038117 | 3300025899 | Bacteria | 2077 |
| 43 | Ga0207657_10050636 | 3300025919 | Bacteria | 3614 |
| 44 | Ga0207694_10091650 | 3300025924 | Bacteria | 2399 |
| 45 | Ga0207687_10007350 | 3300025927 | Bacteria | 7263 |
| 46 | Ga0207690_10012612 | 3300025932 | Bacteria | 5060 |
| 47 | Ga0207661_10007323 | 3300025944 | Bacteria | 7849 |
| 48 | Ga0207679_10045466 | 3300025945 | Bacteria | 3175 |
| 49 | Ga0207667_10260480 | 3300025949 | Bacteria | 1773 |
| 50 | Ga0207703_10135959 | 3300026035 | Bacteria | 2128 |
| 51 | Ga0207676_10027793 | 3300026095 | Bacteria | 4218 |
| 52 | Ga0207674_10027411 | 3300026116 | Bacteria | 6027 |
| 53 | Ga0207675_100081253 | 3300026118 | Bacteria | 3038 |
| 54 | Ga0209281_1000041 | 3300027111 | Bacteria | 347825 |
| 55 | Ga0268264_10019309 | 3300028381 | Bacteria | 5571 |
| 56 | Ga0316575_10009960 | 3300031665 | Bacteria | 3484 |
| 57 | Ga0316576_10004109 | 3300031727 | Bacteria | 8681 |
| 58 | Ga0316578_10016697 | 3300031728 | Bacteria | 3978 |
| 59 | Ga0316583_10008417 | 3300032133 | Bacteria | 3722 |
| 60 | Ga0316582_0020428 | 3300036647 | Bacteria | 3894 |
| 61 | Ga0439438_018547 | 3300041405 | Bacteria | 1979 |
| 62 | Ga0451841_0798133 | 3300041498 | Bacteria | 1293 |
| 63 | Ga0439431_0000671 | 3300041997 | Bacteria | 7313 |
| 64 | Ga0439452_000003 | 3300042010 | Bacteria | 942815 |
| 65 | Ga0466972_0022023 | 3300044658 | Bacteria | 3174 |
| 66 | Ga0466963_0027746 | 3300044694 | Bacteria | 3629 |
| 67 | Ga0466963_0084961 | 3300044694 | Bacteria | 2148 |
| 68 | Ga0466964_0008455 | 3300044706 | Bacteria | 3868 |
| 69 | Ga0466970_0015138 | 3300044765 | Bacteria | 3967 |
| 70 | Ga0466967_0011646 | 3300045976 | Bacteria | 6679 |
| 71 | Ga0466967_0110196 | 3300045976 | Bacteria | 2528 |
| 72 | Ga0495607_0013279 | 3300046501 | Bacteria | 5403 |
| 73 | Ga0495633_0012003 | 3300046558 | Bacteria | 4630 |
| 74 | Ga0495683_0000485 | 3300047323 | Bacteria | 30792 |
| 75 | Ga0496100_0018307 | 3300048903 | Bacteria | 4153 |
| 76 | Ga0496101_0030902 | 3300048904 | Bacteria | 3760 |
| 77 | Ga0496102_0006639 | 3300048905 | Bacteria | 9887 |
| 78 | Ga0496102_0053645 | 3300048905 | Bacteria | 3674 |
| 79 | Ga0496102_0113438 | 3300048905 | Bacteria | 2528 |
| 80 | Ga0496104_0023904 | 3300048907 | Bacteria | 5621 |
| 81 | Ga0496104_0159091 | 3300048907 | Bacteria | 2167 |
| 82 | Ga0496105_0005549 | 3300048908 | Bacteria | 9579 |
| 83 | Ga0496107_0013249 | 3300048910 | Bacteria | 5762 |
| 84 | Ga0496108_0015922 | 3300048911 | Bacteria | 6130 |
| 85 | Ga0496108_0017221 | 3300048911 | Bacteria | 5911 |
| 86 | Ga0496108_0102922 | 3300048911 | Bacteria | 2437 |
| 87 | Ga0496109_0005433 | 3300048912 | Bacteria | 10660 |
| 88 | Ga0496109_0010791 | 3300048912 | Bacteria | 7822 |
| 89 | Ga0496109_0032767 | 3300048912 | Bacteria | 4673 |
| 90 | Ga0496109_0148141 | 3300048912 | Bacteria | 2197 |
| 91 | Ga0496110_0014393 | 3300048913 | Bacteria | 6568 |
| 92 | Ga0496110_0074563 | 3300048913 | Bacteria | 3013 |
| 93 | Ga0496113_0041184 | 3300048916 | Bacteria | 3407 |
| 94 | Ga0496114_0004649 | 3300048917 | Bacteria | 10673 |
| 95 | Ga0496114_0010177 | 3300048917 | Bacteria | 7482 |
| 96 | Ga0496114_0030625 | 3300048917 | Bacteria | 4428 |
| 97 | Ga0496114_0062831 | 3300048917 | Bacteria | 3108 |
| 98 | Ga0496114_0134872 | 3300048917 | Bacteria | 2134 |
| 99 | Ga0496114_0254824 | 3300048917 | Bacteria | 1544 |
| 100 | Ga0496115_0037536 | 3300048918 | Bacteria | 3839 |
| 101 | Ga0496118_0109807 | 3300048921 | Bacteria | 1834 |
| 102 | Ga0496119_0014199 | 3300048922 | Bacteria | 6257 |
| 103 | Ga0496122_0003238 | 3300048925 | Bacteria | 21623 |
| 104 | Ga0496122_0052838 | 3300048925 | Bacteria | 3070 |
| 105 | Ga0501031_0018086 | 3300049568 | Bacteria | 4584 |
| 106 | Ga0501034_0098368 | 3300049571 | Bacteria | 2922 |
| 107 | nmdc:mga00v17_4350_c1 | 3300050491 | Bacteria | 7358 |
| 108 | nmdc:mga0yw44_1272_c1 | 3300050492 | Bacteria | 9930 |
| 109 | nmdc:mga0yw44_7770_c1 | 3300050492 | Bacteria | 5300 |
| 110 | Ga0495619_0011859 | 3300053085 | Bacteria | 5490 |
| 111 | Ga0500644_0000323 | 3300053088 | Bacteria | 24890 |
| 112 | Ga0500641_0000475 | 3300053096 | Bacteria | 14614 |
| 113 | Ga0500624_000011 | 3300053157 | Bacteria | 168125 |
| 114 | 2515855503 | 2515154155 | Bacteria | 7985436 |
| 115 | 2548699497 | 2547132424 | Bacteria | 8348532 |
| 116 | 2552111315 | 2551306166 | Bacteria | 9731570 |
| 117 | 2644083129 | 2643221613 | Bacteria | 4622396 |
| 118 | 2644457611 | 2643221681 | Bacteria | 3707866 |
| 119 | 2644503573 | 2643221690 | Bacteria | 4654705 |
| 120 | 2644517790 | 2643221692 | Bacteria | 7282860 |
| 121 | 2644525854 | 2643221694 | Bacteria | 4392972 |
| 122 | 2644666143 | 2643221721 | Bacteria | 4486924 |
| 123 | 2644669913 | 2643221722 | Bacteria | 4247614 |
| 124 | 2645720221 | 2643221961 | Bacteria | 3919167 |
| 125 | 2645723158 | 2643221962 | Bacteria | 3874254 |
| 126 | 2738695093 | 2738541272 | Bacteria | 6848551 |
| 127 | 2739326524 | 2738543027 | Bacteria | 6409078 |
| 128 | 2739362349 | 2738543034 | Bacteria | 6084756 |
| 129 | 2739606081 | 2739367654 | Bacteria | 6049412 |
| 130 | 2760307093 | 2758568522 | Bacteria | 5953541 |
| 131 | 2760624444 | 2758568621 | Bacteria | 5967089 |
| 132 | 2776373717 | 2775506925 | Bacteria | 7237746 |
| 133 | 2793406553 | 2791355275 | Bacteria | 4429597 |
| 134 | 2809029312 | 2808606394 | Bacteria | 6248540 |
| 135 | 2812364911 | 2811994880 | Bacteria | 4147780 |
| 136 | 2863070125 | 2863067949 | Bacteria | 8541735 |
| 137 | 2884995741 | 2884994152 | Bacteria | 4492978 |
| 138 | 2904767819 | 2904765812 | Bacteria | 5369154 |
| 139 | 2904774405 | 2904770941 | Bacteria | 5580202 |
| 140 | 2908813464 | 2908811453 | Bacteria | 5478616 |
| 141 | 2919423752 | 2919420072 | Bacteria | 5390363 |
| 142 | 2919436360 | 2919432681 | Bacteria | 5390474 |
| 143 | 2919715292 | 2919713450 | Bacteria | 7431245 |
| 144 | 2932433087 | 2932431166 | Bacteria | 4215299 |
| 145 | 2935894800 | 2935890801 | Bacteria | 4593001 |
| 146 | 2974319314 | 2974315732 | Bacteria | 4602776 |
| 147 | 2984527526 | 2984523437 | Bacteria | 4508481 |
| 148 | 8002781650 | 8002775197 | Bacteria | 10728764 |
| 149 | 8056211045 | 8056207758 | Bacteria | 8639239 |
| 150 | 8056583694 | 8056579771 | Bacteria | 5840325 |
| 151 | Ga0496125_0000094 | |||
| 152 | Ga0070683_100022656 | |||
| 153 | Ga0070682_100000691 | |||
| 154 | Ga0070660_100039735 | |||
| 155 | Ga0070661_100166762 | |||
| 156 | Ga0070659_100020420 | |||
| 157 | Ga0070667_100030979 | |||
| 158 | Ga0070714_100013605 | |||
| 159 | Ga0070705_100075035 | |||
| 160 | Ga0070685_10041559 | |||
| 161 | Ga0070679_100128010 | |||
| 162 | Ga0070684_100001882 | |||
| 163 | Ga0068853_100043781 | |||
| 164 | Ga0070693_100020039 | |||
| 165 | Ga0070704_100137742 | |||
| 166 | Ga0070664_100115704 | |||
| 167 | Ga0068857_100020175 | |||
| 168 | Ga0068856_100137528 | |||
| 169 | Ga0068864_100016959 | |||
| 170 | Ga0068866_10029537 | |||
| 171 | Ga0075365_10000431 | |||
| 172 | Ga0075365_10004075 | |||
| 173 | Ga0075363_100021505 | |||
| 174 | Ga0075370_10042715 | |||
| 175 | Ga0079104_1000248 | |||
| 176 | Ga0105245_10004104 | |||
| 177 | Ga0105242_10013375 | |||
| 178 | Ga0105238_10048575 | |||
| 179 | Ga0105239_10001015 | |||
| 180 | Ga0105246_10062539 | |||
| 181 | Ga0157369_10067049 | |||
| 182 | Ga0157378_10021303 | |||
| 183 | Ga0163162_10020305 | |||
| 184 | Ga0157372_10007574 | |||
| 185 | Ga0157372_10028157 | |||
| 186 | Ga0157372_10059437 | |||
| 187 | Ga0157375_10052633 | |||
| 188 | Ga0157375_10270290 | |||
| 189 | Ga0163163_10022224 | |||
| 190 | Ga0157377_10092811 | |||
| 191 | Ga0182006_1000020 | |||
| 192 | Ga0207642_10038117 | |||
| 193 | Ga0207657_10050636 | |||
| 194 | Ga0207694_10091650 | |||
| 195 | Ga0207687_10007350 | |||
| 196 | Ga0207690_10012612 | |||
| 197 | Ga0207661_10007323 | |||
| 198 | Ga0207679_10045466 | |||
| 199 | Ga0207667_10260480 | |||
| 200 | Ga0207703_10135959 | |||
| 201 | Ga0207676_10027793 | |||
| 202 | Ga0207674_10027411 | |||
| 203 | Ga0207675_100081253 | |||
| 204 | Ga0209281_1000041 | |||
| 205 | Ga0268264_10019309 | |||
| 206 | Ga0316575_10009960 | |||
| 207 | Ga0316576_10004109 | |||
| 208 | Ga0316578_10016697 | |||
| 209 | Ga0316583_10008417 | |||
| 210 | Ga0316582_0020428 | |||
| 211 | Ga0439438_018547 | |||
| 212 | Ga0451841_0798133 | |||
| 213 | Ga0439431_0000671 | |||
| 214 | Ga0439452_000003 | |||
| 215 | Ga0466972_0022023 | |||
| 216 | Ga0466963_0027746 | |||
| 217 | Ga0466963_0084961 | |||
| 218 | Ga0466964_0008455 | |||
| 219 | Ga0466970_0015138 | |||
| 220 | Ga0466967_0011646 | |||
| 221 | Ga0466967_0110196 | |||
| 222 | Ga0495607_0013279 | |||
| 223 | Ga0495633_0012003 | |||
| 224 | Ga0495683_0000485 | |||
| 225 | Ga0496100_0018307 | |||
| 226 | Ga0496101_0030902 | |||
| 227 | Ga0496102_0006639 | |||
| 228 | Ga0496102_0053645 | |||
| 229 | Ga0496102_0113438 | |||
| 230 | Ga0496104_0023904 | |||
| 231 | Ga0496104_0159091 | |||
| 232 | Ga0496105_0005549 | |||
| 233 | Ga0496107_0013249 | |||
| 234 | Ga0496108_0015922 | |||
| 235 | Ga0496108_0017221 | |||
| 236 | Ga0496108_0102922 | |||
| 237 | Ga0496109_0005433 | |||
| 238 | Ga0496109_0010791 | |||
| 239 | Ga0496109_0032767 | |||
| 240 | Ga0496109_0148141 | |||
| 241 | Ga0496110_0014393 | |||
| 242 | Ga0496110_0074563 | |||
| 243 | Ga0496113_0041184 | |||
| 244 | Ga0496114_0004649 | |||
| 245 | Ga0496114_0010177 | |||
| 246 | Ga0496114_0030625 | |||
| 247 | Ga0496114_0062831 | |||
| 248 | Ga0496114_0134872 | |||
| 249 | Ga0496114_0254824 | |||
| 250 | Ga0496115_0037536 | |||
| 251 | Ga0496118_0109807 | |||
| 252 | Ga0496119_0014199 | |||
| 253 | Ga0496122_0003238 | |||
| 254 | Ga0496122_0052838 | |||
| 255 | Ga0501031_0018086 | |||
| 256 | Ga0501034_0098368 | |||
| 257 | nmdc:mga00v17_4350_c1 | |||
| 258 | nmdc:mga0yw44_1272_c1 | |||
| 259 | nmdc:mga0yw44_7770_c1 | |||
| 260 | Ga0495619_0011859 | |||
| 261 | Ga0500644_0000323 | |||
| 262 | Ga0500641_0000475 | |||
| 263 | Ga0500624_000011 | |||
| 264 | 2515855503 | |||
| 265 | 2548699497 | |||
| 266 | 2552111315 | |||
| 267 | 2644083129 | |||
| 268 | 2644457611 | |||
| 269 | 2644503573 | |||
| 270 | 2644517790 | |||
| 271 | 2644525854 | |||
| 272 | 2644666143 | |||
| 273 | 2644669913 | |||
| 274 | 2645720221 | |||
| 275 | 2645723158 | |||
| 276 | 2738695093 | |||
| 277 | 2739326524 | |||
| 278 | 2739362349 | |||
| 279 | 2739606081 | |||
| 280 | 2760307093 | |||
| 281 | 2760624444 | |||
| 282 | 2776373717 | |||
| 283 | 2793406553 | |||
| 284 | 2809029312 | |||
| 285 | 2812364911 | |||
| 286 | 2863070125 | |||
| 287 | 2884995741 | |||
| 288 | 2904767819 | |||
| 289 | 2904774405 | |||
| 290 | 2908813464 | |||
| 291 | 2919423752 | |||
| 292 | 2919436360 | |||
| 293 | 2919715292 | |||
| 294 | 2932433087 | |||
| 295 | 2935894800 | |||
| 296 | 2974319314 | |||
| 297 | 2984527526 | |||
| 298 | 8002781650 | |||
| 299 | 8056211045 | |||
| 300 | 8056583694 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3by6-assembly3.cif.gz_C | crystal structure of a transcriptional regulator from oenococcus oeni | 0.9616 | 21 | 85 |
| 2wv0-assembly5.cif.gz_I | crystal structure of the gntr-hutc family member yvoa from bacillus subtilis | 0.9343 | 21 | 85 |
| 7pq9-assembly7.cif.gz_KKK | crystal structure of bacillus clausii pdxr at 2.8 angstroms resolution | 0.9161 | 16 | 87 |
| 4r1h-assembly1.cif.gz_B | gntr family transcriptional regulator from listeria monocytogenes | 0.9134 | 23 | 85 |
| 3neu-assembly1.cif.gz_A-2 | the crystal structure of a functionally-unknown protein lin1836 from listeria innocua clip11262 | 0.9108 | 23 | 85 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q2G1P1_1_44_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.979 | 43 | 86 | 1.10.10.10 |
| 3by6B01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9629 | 21 | 85 | 1.10.10.10 |
| af_Q2G1P1_1_44_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.958 | 43 | 86 | 1.10.10.10 |
| af_Q2G0Q2_1_79_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9551 | 23 | 85 | 1.10.10.10 |
| 3by6E01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9453 | 21 | 85 | 1.10.10.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7K3S5K9-F1-model_v4 | PLP-dependent aminotransferase family protein | 0.9669 | 106 | 400 |
GO:0008483
GO:0009058 GO:0030170 |
| AF-A0A5C4M3P1-F1-model_v4 | Pyridoxal phosphate-dependent aminotransferase | 0.9369 | 209 | 483 |
GO:0008483
GO:0009058 GO:0030170 |
| AF-A0A6G4NT43-F1-model_v4 | PLP-dependent aminotransferase family protein | 0.9366 | 183 | 313 |
GO:0008483
GO:0009058 GO:0030170 GO:1901605 |
| AF-A0A2J4RIZ6-F1-model_v4 | Transcriptional regulator | 0.9347 | 171 | 467 |
GO:0008483
GO:0009058 GO:0030170 |
| AF-W4UBM9-F1-model_v4 | deleted | 0.9317 | 216 | 462 |
|