F207795

General Info

Members Datasets Scaffolds Average Seq Length
150 102 300 205

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10413149|Ga0070658_104131491
Length 223
Sequence MDHWLKMTPTAGRSPQRARDGDEGARAVGRAPQQDRSRATRSRLLEAAINCLAELGYQASTVAVVAEHAGVSRGAAQHHFPTREALFTAALEHVTAVRAQEMKQQFAELPGGRPDTATVVDVLFALFTGTLFRAALALWVAAANEPTLRDQIVPLEARMGRDIHRIVVGLLGVDEREPGVRETVQATLDLARGLGLANLLTDDSARRAGIAAQWAAILDATLR

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
10 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
11 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
17 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
20 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
21 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
24 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
25 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
26 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
27 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
28 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
29 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
30 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
44 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
45 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
46 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
47 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
48 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
49 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
50 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
51 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
52 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
53 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
54 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
55 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
56 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
57 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
58 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
59 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
60 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
63 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
64 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
65 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
66 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
67 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
68 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
69 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
70 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
71 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
72 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
73 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
74 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
75 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
76 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
77 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
80 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
81 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
82 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
89 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
94 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
95 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
96 2582580736 Prauserella sp. Am3 Isolate Unclassified
97 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
98 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
99 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
100 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
101 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
102 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92
Metatranscriptomes 3.33
Isolates 4.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.67
Rhizosphere 88.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10413149 3300005327 Bacteria 1160
2 JGI24735J21928_10042306 3300002067 Bacteria 1327
3 Ga0070658_10028097 3300005327 Bacteria 4516
4 Ga0070683_100046650 3300005329 Bacteria 4004
5 Ga0070713_100168995 3300005436 Bacteria 1958
6 Ga0070711_100184028 3300005439 Bacteria 1601
7 Ga0070681_10202289 3300005458 Bacteria 1904
8 Ga0070684_100403371 3300005535 Bacteria 1261
9 Ga0068855_100042098 3300005563 Bacteria 5413
10 Ga0068855_100061840 3300005563 Bacteria 4373
11 Ga0068855_100336340 3300005563 Bacteria 1666
12 Ga0068855_100573023 3300005563 Bacteria 1220
13 Ga0068857_100742725 3300005577 Bacteria 934
14 Ga0068856_100010233 3300005614 Bacteria 9121
15 Ga0068856_100924132 3300005614 Bacteria 891
16 Ga0068852_100186127 3300005616 Bacteria 1956
17 Ga0068859_100097054 3300005617 Bacteria 3000
18 Ga0070712_100064435 3300006175 Bacteria 2599
19 Ga0075428_100000138 3300006844 Bacteria 64487
20 Ga0075431_100005843 3300006847 Bacteria 12175
21 Ga0075429_100728899 3300006880 Bacteria 868
22 Ga0097620_100097052 3300006931 Bacteria 3000
23 Ga0105240_10047388 3300009093 Bacteria 5439
24 Ga0105241_10115218 3300009174 Bacteria 2157
25 Ga0105241_10717593 3300009174 Bacteria 914
26 Ga0105248_11297928 3300009177 Bacteria 823
27 Ga0105237_10050465 3300009545 Bacteria 4180
28 Ga0105237_10209686 3300009545 Bacteria 1948
29 Ga0105237_10425960 3300009545 Bacteria 1333
30 Ga0105239_10234665 3300010375 Bacteria 2058
31 Ga0105239_10445269 3300010375 Bacteria 1469
32 Ga0157369_10079050 3300013105 Bacteria 3523
33 Ga0157372_10000769 3300013307 Bacteria 34731
34 Ga0182008_10409910 3300014497 Bacteria 729
35 Ga0157376_10633450 3300014969 Bacteria 1068
36 Ga0197907_10446042 3300020069 Bacteria 1381
37 Ga0206353_10137287 3300020082 Bacteria 2291
38 Ga0206353_10146859 3300020082 Bacteria 1477
39 Ga0206353_10677624 3300020082 Bacteria 1768
40 Ga0224712_10048070 3300022467 Bacteria 1645
41 Ga0207705_10025029 3300025909 Bacteria 4261
42 Ga0207654_10058728 3300025911 Bacteria 2241
43 Ga0207695_10111307 3300025913 Bacteria 2717
44 Ga0207671_10367144 3300025914 Bacteria 1143
45 Ga0207663_10220907 3300025916 Bacteria 1378
46 Ga0207700_10172575 3300025928 Bacteria 1805
47 Ga0207661_10128617 3300025944 Bacteria 2166
48 Ga0207667_10030917 3300025949 Bacteria 5786
49 Ga0207667_10311782 3300025949 Bacteria 1607
50 Ga0207667_10323491 3300025949 Bacteria 1575
51 Ga0207702_10431158 3300026078 Bacteria 1276
52 Ga0207674_10594714 3300026116 Bacteria 1069
53 Ga0207698_10083930 3300026142 Bacteria 2580
54 Ga0268266_10255665 3300028379 Bacteria 1622
55 Ga0268265_10724337 3300028380 Bacteria 963
56 Ga0307517_10060368 3300028786 Bacteria 3611
57 Ga0307511_10038774 3300030521 Bacteria 4083
58 Ga0307510_10154705 3300033180 Bacteria 1903
59 Ga0373927_0487908 3300035695 Bacteria 814
60 Ga0451797_1358044 3300041453 Bacteria 1326
61 Ga0451833_0301379 3300041491 Bacteria 817
62 Ga0451837_1859024 3300041494 Bacteria 681
63 Ga0451843_0212547 3300041509 Bacteria 1222
64 Ga0466969_0002984 3300044656 Bacteria 9022
65 Ga0466969_0004327 3300044656 Bacteria 7557
66 Ga0466969_0173426 3300044656 Bacteria 988
67 Ga0466969_0297154 3300044656 Bacteria 731
68 Ga0466972_0097226 3300044658 Bacteria 1394
69 Ga0466965_0012796 3300044683 Bacteria 3950
70 Ga0466965_0370358 3300044683 Bacteria 787
71 Ga0466966_0010226 3300044684 Bacteria 6224
72 Ga0466966_0037031 3300044684 Bacteria 3148
73 Ga0466966_0071879 3300044684 Bacteria 2167
74 Ga0466966_0073141 3300044684 Bacteria 2145
75 Ga0466966_0133036 3300044684 Bacteria 1522
76 Ga0466966_0269929 3300044684 Bacteria 1024
77 Ga0466961_0028530 3300044693 Bacteria 3588
78 Ga0466961_0045131 3300044693 Bacteria 2820
79 Ga0466961_0458366 3300044693 Bacteria 771
80 Ga0466963_0006378 3300044694 Bacteria 6980
81 Ga0466963_0036621 3300044694 Bacteria 3200
82 Ga0466963_0041531 3300044694 Bacteria 3017
83 Ga0466963_0100874 3300044694 Bacteria 1976
84 Ga0466963_0192073 3300044694 Bacteria 1426
85 Ga0466963_0228885 3300044694 Bacteria 1302
86 Ga0466971_0004112 3300044719 Bacteria 6263
87 Ga0466957_0113378 3300044842 Bacteria 1721
88 Ga0466960_0036739 3300044901 Bacteria 2295
89 Ga0466959_0002716 3300045049 Bacteria 11371
90 Ga0466959_0004404 3300045049 Bacteria 9425
91 Ga0466959_0024856 3300045049 Bacteria 4437
92 Ga0466959_0248839 3300045049 Bacteria 1226
93 Ga0466959_0282141 3300045049 Bacteria 1140
94 Ga0466959_0313159 3300045049 Bacteria 1074
95 Ga0466958_0003254 3300045836 Bacteria 8391
96 Ga0466958_0052446 3300045836 Bacteria 2472
97 Ga0466958_0154188 3300045836 Bacteria 1449
98 Ga0466967_0022630 3300045976 Bacteria 5134
99 Ga0466967_0068237 3300045976 Bacteria 3174
100 Ga0466967_0090404 3300045976 Bacteria 2781
101 Ga0466967_0152765 3300045976 Bacteria 2159
102 Ga0466967_0432229 3300045976 Bacteria 1284
103 Ga0495651_0000447 3300046462 Bacteria 31798
104 Ga0495662_0347834 3300046476 Bacteria 729
105 Ga0495628_0020293 3300046516 Bacteria 5484
106 Ga0495652_0002727 3300046529 Bacteria 17906
107 Ga0495587_0286767 3300046536 Bacteria 922
108 Ga0495645_0220914 3300046543 Bacteria 1274
109 Ga0495635_0010351 3300046663 Bacteria 6522
110 Ga0495588_0174802 3300046674 Bacteria 1135
111 Ga0495599_0214747 3300046678 Bacteria 1178
112 Ga0495623_0023470 3300046679 Bacteria 3981
113 Ga0495646_0072788 3300046680 Bacteria 2020
114 Ga0495613_0067724 3300046689 Bacteria 2606
115 Ga0495600_0002333 3300046809 Bacteria 10827
116 Ga0495600_0126849 3300046809 Bacteria 1660
117 Ga0495604_0004381 3300047317 Bacteria 11183
118 Ga0495604_0314867 3300047317 Bacteria 1047
119 Ga0495675_0021122 3300047444 Bacteria 4144
120 Ga0495675_0224252 3300047444 Bacteria 1136
121 Ga0496102_0000263 3300048905 Bacteria 67095
122 Ga0496108_1100654 3300048911 Bacteria 675
123 Ga0496112_0468682 3300048915 Bacteria 1197
124 Ga0496126_0288008 3300048929 Bacteria 1359
125 Ga0501031_0003245 3300049568 Bacteria 10454
126 Ga0501032_0025500 3300049569 Bacteria 4075
127 Ga0501033_0110213 3300049570 Bacteria 2004
128 Ga0501033_0221162 3300049570 Bacteria 1348
129 Ga0501037_0029643 3300049573 Bacteria 4043
130 Ga0501038_0001063 3300049574 Bacteria 24793
131 Ga0501048_0001413 3300049582 Bacteria 18167
132 Ga0501070_0009683 3300049586 Bacteria 8148
133 Ga0501035_0031854 3300049822 Bacteria 4802
134 Ga0501035_0342297 3300049822 Bacteria 1253
135 Ga0501044_0033301 3300049823 Bacteria 5416
136 Ga0501044_0222320 3300049823 Bacteria 1839
137 Ga0501044_0288848 3300049823 Bacteria 1572
138 nmdc:mga06r32_9682_c1 3300050510 Bacteria 8706
139 nmdc:mga0n895_341918_c1 3300050512 Bacteria 1515
140 Ga0495601_0101926 3300053077 Bacteria 1854
141 Ga0495619_0096560 3300053085 Bacteria 2007
142 Ga0466962_0005352 3300061719 Bacteria 6172
143 Ga0466962_0113598 3300061719 Bacteria 1304
144 2583151227 2582580736 Bacteria 5325865
145 2644016907 2643221601 Bacteria 7493239
146 2644177949 2643221631 Bacteria 8168043
147 2819746722 2818991472 Bacteria 10089953
148 2917739415 2917736166 Bacteria 9690793
149 2995467548 2995463766 Bacteria 8577691
150 3006328217 3006321560 Bacteria 8247479
151 Ga0070658_10413149
152 JGI24735J21928_10042306
153 Ga0070658_10028097
154 Ga0070683_100046650
155 Ga0070713_100168995
156 Ga0070711_100184028
157 Ga0070681_10202289
158 Ga0070684_100403371
159 Ga0068855_100042098
160 Ga0068855_100061840
161 Ga0068855_100336340
162 Ga0068855_100573023
163 Ga0068857_100742725
164 Ga0068856_100010233
165 Ga0068856_100924132
166 Ga0068852_100186127
167 Ga0068859_100097054
168 Ga0070712_100064435
169 Ga0075428_100000138
170 Ga0075431_100005843
171 Ga0075429_100728899
172 Ga0097620_100097052
173 Ga0105240_10047388
174 Ga0105241_10115218
175 Ga0105241_10717593
176 Ga0105248_11297928
177 Ga0105237_10050465
178 Ga0105237_10209686
179 Ga0105237_10425960
180 Ga0105239_10234665
181 Ga0105239_10445269
182 Ga0157369_10079050
183 Ga0157372_10000769
184 Ga0182008_10409910
185 Ga0157376_10633450
186 Ga0197907_10446042
187 Ga0206353_10137287
188 Ga0206353_10146859
189 Ga0206353_10677624
190 Ga0224712_10048070
191 Ga0207705_10025029
192 Ga0207654_10058728
193 Ga0207695_10111307
194 Ga0207671_10367144
195 Ga0207663_10220907
196 Ga0207700_10172575
197 Ga0207661_10128617
198 Ga0207667_10030917
199 Ga0207667_10311782
200 Ga0207667_10323491
201 Ga0207702_10431158
202 Ga0207674_10594714
203 Ga0207698_10083930
204 Ga0268266_10255665
205 Ga0268265_10724337
206 Ga0307517_10060368
207 Ga0307511_10038774
208 Ga0307510_10154705
209 Ga0373927_0487908
210 Ga0451797_1358044
211 Ga0451833_0301379
212 Ga0451837_1859024
213 Ga0451843_0212547
214 Ga0466969_0002984
215 Ga0466969_0004327
216 Ga0466969_0173426
217 Ga0466969_0297154
218 Ga0466972_0097226
219 Ga0466965_0012796
220 Ga0466965_0370358
221 Ga0466966_0010226
222 Ga0466966_0037031
223 Ga0466966_0071879
224 Ga0466966_0073141
225 Ga0466966_0133036
226 Ga0466966_0269929
227 Ga0466961_0028530
228 Ga0466961_0045131
229 Ga0466961_0458366
230 Ga0466963_0006378
231 Ga0466963_0036621
232 Ga0466963_0041531
233 Ga0466963_0100874
234 Ga0466963_0192073
235 Ga0466963_0228885
236 Ga0466971_0004112
237 Ga0466957_0113378
238 Ga0466960_0036739
239 Ga0466959_0002716
240 Ga0466959_0004404
241 Ga0466959_0024856
242 Ga0466959_0248839
243 Ga0466959_0282141
244 Ga0466959_0313159
245 Ga0466958_0003254
246 Ga0466958_0052446
247 Ga0466958_0154188
248 Ga0466967_0022630
249 Ga0466967_0068237
250 Ga0466967_0090404
251 Ga0466967_0152765
252 Ga0466967_0432229
253 Ga0495651_0000447
254 Ga0495662_0347834
255 Ga0495628_0020293
256 Ga0495652_0002727
257 Ga0495587_0286767
258 Ga0495645_0220914
259 Ga0495635_0010351
260 Ga0495588_0174802
261 Ga0495599_0214747
262 Ga0495623_0023470
263 Ga0495646_0072788
264 Ga0495613_0067724
265 Ga0495600_0002333
266 Ga0495600_0126849
267 Ga0495604_0004381
268 Ga0495604_0314867
269 Ga0495675_0021122
270 Ga0495675_0224252
271 Ga0496102_0000263
272 Ga0496108_1100654
273 Ga0496112_0468682
274 Ga0496126_0288008
275 Ga0501031_0003245
276 Ga0501032_0025500
277 Ga0501033_0110213
278 Ga0501033_0221162
279 Ga0501037_0029643
280 Ga0501038_0001063
281 Ga0501048_0001413
282 Ga0501070_0009683
283 Ga0501035_0031854
284 Ga0501035_0342297
285 Ga0501044_0033301
286 Ga0501044_0222320
287 Ga0501044_0288848
288 nmdc:mga06r32_9682_c1
289 nmdc:mga0n895_341918_c1
290 Ga0495601_0101926
291 Ga0495619_0096560
292 Ga0466962_0005352
293 Ga0466962_0113598
294 2583151227
295 2644016907
296 2644177949
297 2819746722
298 2917739415
299 2995467548
300 3006328217

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

44

90

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5x5i-assembly4.cif.gz_H the x-ray crystal structure of a tetr family transcription regulator rcda involved in the regulation of biofilm formation in escherichia coli 0.7784 18 195
5x5i-assembly3.cif.gz_F the x-ray crystal structure of a tetr family transcription regulator rcda involved in the regulation of biofilm formation in escherichia coli 0.7737 15 195
3g7r-assembly1.cif.gz_A crystal structure of sco4454, a tetr-family transcriptional regulator from streptomyces coelicolor 0.761 17 201
5ztc-assembly1.cif.gz_B apo structure of tetr family transcription regulator lmo2088 of listeria monocytogenes egde 0.7532 18 199
5x5i-assembly3.cif.gz_F the x-ray crystal structure of a tetr family transcription regulator rcda involved in the regulation of biofilm formation in escherichia coli 0.7509 15 195
ID Description Score Start End Superfamily
3mvpB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9558 15 57 1.10.10.60
2fq4A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9523 16 59 1.10.10.60
3whcC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9481 15 59 1.10.10.60
3mvpA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9468 13 57 1.10.10.60
2jj7B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.946 15 59 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A0Q6GS41-F1-model_v4 TetR family transcriptional regulator 0.971 22 200 GO:0000976
GO:0003700
AF-A0A1P8YF12-F1-model_v4 Bacterial regulatory, tetR family protein 0.9645 6 200 GO:0000976
GO:0003700
AF-A0A4V3D7S0-F1-model_v4 TetR family transcriptional regulator 0.9627 22 200 GO:0000976
GO:0003700
AF-A0A4P7GQD1-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9624 18 200 GO:0000976
GO:0003700
AF-A0A2R7YYJ2-F1-model_v4 TetR family transcriptional regulator 0.9608 18 201 GO:0000976
GO:0003700

Map