F206827

General Info

Members Datasets Scaffolds Average Seq Length
149 120 136 279

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0170969|Ga0451576_0170969_350_1282
Length 310
Sequence MVERTPILNFVTHVVLLLGLLSVLFPLWLVFVGSTLTIAEINQPVMQLVPGHHLMENMAEAWRRGFFESRLVNSLIMSLGVAVGKVILSMLTAYGLVYFRFPGRTVIFWAIFITLMLPIEIRIVPTYAVAANALVPYQTMLEWTGLDQLIHALSGVEVKLELNLLNSYPGLILPLVATATGTFLYRQFFLTIPDHLLEAAKMDGVGPIRFLREILTPLSVNNMIALFTIMFLSSWNQYLWPLVATPDRAGFGTTAVVQLKMLSPTVSTNGGGTPDWNVAMAGSLIVMLPPLLLTILMQRWFVRGLVATDK

Samples

Sample ID Description Type Environment
1 2643221734 Bosea sp. Root670 Isolate Unclassified
2 2643221736 Bosea sp. Root483D1 Isolate Unclassified
3 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
4 2818991467 Bosea vestrisii 3192 Isolate Unclassified
5 2841760612 Bosea sp. Tri-49 Isolate Nodule
6 2844104063 Bosea sp. Tri-39 Isolate Nodule
7 2851246043 Bosea sp. Tri-54 Isolate Nodule
8 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
9 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
10 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
11 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
16 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
30 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
51 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
54 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
55 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
75 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
76 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
79 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
82 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
83 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
84 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
85 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
86 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
89 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
90 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
91 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
92 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
93 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
105 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
106 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
107 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
108 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
109 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
110 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
114 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
115 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
116 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
119 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified
120 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.28
Metatranscriptomes 0
Isolates 8.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.36
Nodule 3.36
Rhizoplane 2.01
Rhizosphere 69.8
Stem 0
Stem Tuber 0
Unclassified 21.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065714_10079020 3300005288 Bacteria 2549
2 Ga0070658_10102824 3300005327 Bacteria 2363
3 Ga0070658_10197920 3300005327 Bacteria 1695
4 Ga0070658_10279136 3300005327 Bacteria 1422
5 Ga0070683_100354766 3300005329 Bacteria 1396
6 Ga0070670_100145788 3300005331 Bacteria 2048
7 Ga0070682_100416654 3300005337 Bacteria 1020
8 Ga0070709_10012358 3300005434 Bacteria 4777
9 Ga0070714_100293193 3300005435 Bacteria 1514
10 Ga0070713_100124848 3300005436 Bacteria 2262
11 Ga0070681_10103329 3300005458 Bacteria 2794
12 Ga0070681_10130350 3300005458 Bacteria 2447
13 Ga0070707_100011237 3300005468 Bacteria 8345
14 Ga0070698_100335869 3300005471 Bacteria 1442
15 Ga0070699_100107947 3300005518 Bacteria 2442
16 Ga0070684_100037021 3300005535 Bacteria 4183
17 Ga0068853_100466746 3300005539 Bacteria 1189
18 Ga0068856_100014008 3300005614 Bacteria 7753
19 Ga0068852_100053692 3300005616 Bacteria 3470
20 Ga0068859_100377186 3300005617 Bacteria 1514
21 Ga0068859_100603498 3300005617 Bacteria 1191
22 Ga0068860_100008910 3300005843 Bacteria 9998
23 Ga0068860_100221718 3300005843 Bacteria 1836
24 Ga0070717_10451260 3300006028 Bacteria 1159
25 Ga0070716_100186222 3300006173 Bacteria 1368
26 Ga0070712_100041395 3300006175 Bacteria 3164
27 Ga0075362_10090266 3300006177 Bacteria 1421
28 Ga0075366_10057908 3300006195 Bacteria 2302
29 Ga0075370_10224049 3300006353 Bacteria 1112
30 Ga0068871_100581500 3300006358 Bacteria 1017
31 Ga0075430_100267637 3300006846 Bacteria 1415
32 Ga0075431_100463306 3300006847 Bacteria 1262
33 Ga0075436_100148659 3300006914 Bacteria 1647
34 Ga0097620_100377212 3300006931 Bacteria 1514
35 Ga0097620_100603486 3300006931 Bacteria 1191
36 Ga0111539_10317746 3300009094 Bacteria 1812
37 Ga0105245_10118831 3300009098 Bacteria 2467
38 Ga0105243_10030190 3300009148 Bacteria 4172
39 Ga0105242_10317711 3300009176 Bacteria 1427
40 Ga0105248_10279252 3300009177 Bacteria 1880
41 Ga0105249_10402872 3300009553 Bacteria 1399
42 Ga0099796_10004511 3300010159 Bacteria 3379
43 Ga0157373_10000235 3300013100 Bacteria 45175
44 Ga0171462_1019 3300013250 Bacteria 146628
45 Ga0157374_10595647 3300013296 Bacteria 1115
46 Ga0157380_10022369 3300014326 Bacteria 4757
47 Ga0182008_10109084 3300014497 Bacteria 1371
48 Ga0157379_10470420 3300014968 Bacteria 1162
49 Ga0213876_10002701 3300021384 Bacteria 10339
50 Ga0213876_10178938 3300021384 Bacteria 1128
51 Ga0213875_10000260 3300021388 Bacteria 53076
52 Ga0213875_10001120 3300021388 Bacteria 18489
53 Ga0213875_10001471 3300021388 Bacteria 15219
54 Ga0213875_10010928 3300021388 Bacteria 4534
55 Ga0213875_10142087 3300021388 Bacteria 1124
56 Ga0207692_10029544 3300025898 Bacteria 2606
57 Ga0207688_10010881 3300025901 Bacteria 4950
58 Ga0207699_10004423 3300025906 Bacteria 6719
59 Ga0207684_10043798 3300025910 Bacteria 3795
60 Ga0207707_10082660 3300025912 Bacteria 2804
61 Ga0207707_10263649 3300025912 Bacteria 1494
62 Ga0207693_10021527 3300025915 Bacteria 5122
63 Ga0207646_10030455 3300025922 Bacteria 4891
64 Ga0207700_10002280 3300025928 Bacteria 11009
65 Ga0207709_10324866 3300025935 Bacteria 1153
66 Ga0207669_10267589 3300025937 Bacteria 1282
67 Ga0207665_10182317 3300025939 Bacteria 1521
68 Ga0207711_10396376 3300025941 Bacteria 1282
69 Ga0207679_10454691 3300025945 Bacteria 1136
70 Ga0207703_10138384 3300026035 Bacteria 2110
71 Ga0207639_10143708 3300026041 Bacteria 1991
72 Ga0207708_10103048 3300026075 Bacteria 2210
73 Ga0207702_10014077 3300026078 Bacteria 6642
74 Ga0207648_10502527 3300026089 Bacteria 1109
75 Ga0268264_10008063 3300028381 Bacteria 8760
76 Ga0307509_10165426 3300031507 Bacteria 2102
77 Ga0373927_0090531 3300035695 Bacteria 1987
78 Ga0373947_0051725 3300035725 Bacteria 2472
79 Ga0373937_0509476 3300036401 Bacteria 1143
80 Ga0436364_0055992 3300037853 Bacteria 7061
81 Ga0436364_0068347 3300037853 Bacteria 1412
82 Ga0436364_0160422 3300037853 Bacteria 2363
83 Ga0436364_0265234 3300037853 Bacteria 1920
84 Ga0436364_0363959 3300037853 Bacteria 1120
85 Ga0436364_1003626 3300037853 Bacteria 1053
86 Ga0436364_1036453 3300037853 Bacteria 1179
87 Ga0436364_1057094 3300037853 Bacteria 52413
88 Ga0436364_1364922 3300037853 Bacteria 18204
89 Ga0436364_1522147 3300037853 Bacteria 9285
90 Ga0400488_43385 3300038741 Bacteria 2975
91 Ga0436365_0131189 3300039437 Bacteria 4544
92 Ga0436365_0851564 3300039437 Bacteria 1206
93 Ga0436365_1521415 3300039437 Bacteria 14693
94 Ga0436365_1895663 3300039437 Bacteria 935
95 Ga0436360_1161601 3300039438 Bacteria 3270
96 Ga0436360_1193402 3300039438 Bacteria 2628
97 Ga0436363_0688010 3300039450 Bacteria 2326
98 Ga0436362_1056852 3300039453 Bacteria 4509
99 Ga0439465_0076343 3300041413 Bacteria 1130
100 Ga0466969_0006748 3300044656 Bacteria 6104
101 Ga0466959_0094072 3300045049 Bacteria 2150
102 Ga0451576_0170969 3300045051 Bacteria 2268
103 Ga0466967_0049517 3300045976 Bacteria 3674
104 Ga0495592_0044758 3300046454 Bacteria 3305
105 Ga0495618_0082847 3300046514 Bacteria 2049
106 Ga0495628_0209176 3300046516 Bacteria 1468
107 Ga0495645_0085562 3300046543 Bacteria 2257
108 Ga0495661_0047558 3300046665 Bacteria 2611
109 Ga0495600_0064367 3300046809 Bacteria 2397
110 Ga0495686_0142777 3300047472 Bacteria 1412
111 Ga0496104_0325453 3300048907 Bacteria 1450
112 Ga0496112_0028340 3300048915 Bacteria 5405
113 Ga0496112_0084432 3300048915 Bacteria 3141
114 Ga0496117_0040999 3300048920 Bacteria 3398
115 Ga0496126_0067898 3300048929 Bacteria 3185
116 Ga0501032_0322294 3300049569 Bacteria 997
117 Ga0501034_0144273 3300049571 Bacteria 2359
118 Ga0501034_0337249 3300049571 Bacteria 1438
119 Ga0501039_0180980 3300049575 Bacteria 1658
120 Ga0501047_0020170 3300049581 Bacteria 6399
121 Ga0501047_0167570 3300049581 Bacteria 2067
122 Ga0501067_0030280 3300049583 Bacteria 3002
123 Ga0501067_0063329 3300049583 Bacteria 2048
124 Ga0501073_0265847 3300049589 Bacteria 1184
125 Ga0501075_0218691 3300049591 Bacteria 1453
126 Ga0501076_0087177 3300049592 Bacteria 2509
127 Ga0501079_0125496 3300049741 Bacteria 1997
128 Ga0501080_0093216 3300049742 Bacteria 2797
129 Ga0501081_0259170 3300049743 Bacteria 1270
130 Ga0501083_0028189 3300049744 Bacteria 3872
131 Ga0501044_0209572 3300049823 Bacteria 1903
132 nmdc:mga03683_34342_c1 3300050489 Bacteria 2052
133 nmdc:mga08y16_339923_c1 3300050511 Bacteria 1543
134 nmdc:mga08x19_25730_c1 3300050514 Bacteria 3668
135 Ga0495601_0022941 3300053077 Bacteria 3835
136 Ga0500568_0009542 3300053139 Bacteria 4601

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037853 Ga0436364_1003626 Ga0436364_1003626_20_757 228
2 3300013296 Ga0157374_10595647 Ga0157374_105956472 240
3 3300046665 Ga0495661_0047558 Ga0495661_0047558_19_759 240
4 3300046809 Ga0495600_0064367 Ga0495600_0064367_38_841 244
5 3300049742 Ga0501080_0093216 Ga0501080_0093216_1831_2703 245
6 3300049823 Ga0501044_0209572 Ga0501044_0209572_468_1340 245
7 3300045049 Ga0466959_0094072 Ga0466959_0094072_875_1645 249
8 3300049569 Ga0501032_0322294 Ga0501032_0322294_15_785 249
9 3300005539 Ga0068853_100466746 Ga0068853_1004667461 250
10 3300005617 Ga0068859_100377186 Ga0068859_1003771862 251
11 3300005843 Ga0068860_100221718 Ga0068860_1002217182 251
12 3300006358 Ga0068871_100581500 Ga0068871_1005815002 251
13 3300006931 Ga0097620_100377212 Ga0097620_1003772122 251
14 3300009177 Ga0105248_10279252 Ga0105248_102792522 251
15 3300025941 Ga0207711_10396376 Ga0207711_103963762 251
16 3300026035 Ga0207703_10138384 Ga0207703_101383842 251
17 3300006177 Ga0075362_10090266 Ga0075362_100902662 254
18 3300006353 Ga0075370_10224049 Ga0075370_102240492 254
19 3300046454 Ga0495592_0044758 Ga0495592_0044758_2432_3277 258
20 3300046514 Ga0495618_0082847 Ga0495618_0082847_895_1740 258
21 3300046516 Ga0495628_0209176 Ga0495628_0209176_299_1144 258
22 3300053077 Ga0495601_0022941 Ga0495601_0022941_341_1186 258
23 3300049583 Ga0501067_0063329 Ga0501067_0063329_190_1035 259
24 3300049744 Ga0501083_0028189 Ga0501083_0028189_443_1288 259
25 3300005435 Ga0070714_100293193 Ga0070714_1002931932 264
26 3300005436 Ga0070713_100124848 Ga0070713_1001248483 264
27 3300005468 Ga0070707_100011237 Ga0070707_1000112379 264
28 3300005471 Ga0070698_100335869 Ga0070698_1003358691 264
29 3300005518 Ga0070699_100107947 Ga0070699_1001079473 264
30 3300005614 Ga0068856_100014008 Ga0068856_1000140082 264
31 3300006173 Ga0070716_100186222 Ga0070716_1001862222 264
32 3300006914 Ga0075436_100148659 Ga0075436_1001486593 264
33 3300010159 Ga0099796_10004511 Ga0099796_100045113 264
34 3300014497 Ga0182008_10109084 Ga0182008_101090842 264
35 3300021384 Ga0213876_10178938 Ga0213876_101789382 264
36 3300025898 Ga0207692_10029544 Ga0207692_100295443 264
37 3300025910 Ga0207684_10043798 Ga0207684_100437982 264
38 3300025922 Ga0207646_10030455 Ga0207646_100304552 264
39 3300025928 Ga0207700_10002280 Ga0207700_1000228010 264
40 3300026078 Ga0207702_10014077 Ga0207702_100140777 264
41 3300035695 Ga0373927_0090531 Ga0373927_0090531_200_1048 264
42 3300035725 Ga0373947_0051725 Ga0373947_0051725_1377_2225 264
43 3300039437 Ga0436365_0131189 Ga0436365_0131189_3541_4440 264
44 3300039453 Ga0436362_1056852 Ga0436362_1056852_1471_2316 264
45 3300048907 Ga0496104_0325453 Ga0496104_0325453_171_1016 264
46 3300048915 Ga0496112_0028340 Ga0496112_0028340_757_1602 264
47 3300050514 nmdc:mga08x19_25730_c1 nmdc:mga08x19_25730_c1_2092_2940 264
48 3300039437 Ga0436365_0851564 Ga0436365_0851564_292_1140 265
49 3300009098 Ga0105245_10118831 Ga0105245_101188312 268
50 3300014968 Ga0157379_10470420 Ga0157379_104704202 268
51 3300048915 Ga0496112_0084432 Ga0496112_0084432_1624_2472 268
52 3300046543 Ga0495645_0085562 Ga0495645_0085562_802_1653 269
53 3300025937 Ga0207669_10267589 Ga0207669_102675892 270
54 iso_pu_bacteria 8002745576 8002746125 270
55 3300021388 Ga0213875_10001471 Ga0213875_1000147112 271
56 3300021388 Ga0213875_10142087 Ga0213875_101420872 271
57 3300037853 Ga0436364_0363959 Ga0436364_0363959_28_858 271
58 3300037853 Ga0436364_1522147 Ga0436364_1522147_1447_2277 271
59 3300037853 Ga0436364_0068347 Ga0436364_0068347_246_1079 272
60 3300039438 Ga0436360_1161601 Ga0436360_1161601_2412_3245 272
61 3300005331 Ga0070670_100145788 Ga0070670_1001457883 274
62 3300005434 Ga0070709_10012358 Ga0070709_100123584 274
63 3300005458 Ga0070681_10103329 Ga0070681_101033294 274
64 3300005458 Ga0070681_10130350 Ga0070681_101303502 274
65 3300006028 Ga0070717_10451260 Ga0070717_104512601 274
66 3300006175 Ga0070712_100041395 Ga0070712_1000413953 274
67 3300021388 Ga0213875_10000260 Ga0213875_1000026045 274
68 3300021388 Ga0213875_10001120 Ga0213875_100011204 274
69 3300021388 Ga0213875_10010928 Ga0213875_100109282 274
70 3300025906 Ga0207699_10004423 Ga0207699_100044234 274
71 3300025912 Ga0207707_10082660 Ga0207707_100826604 274
72 3300025912 Ga0207707_10263649 Ga0207707_102636492 274
73 3300025915 Ga0207693_10021527 Ga0207693_100215273 274
74 3300025939 Ga0207665_10182317 Ga0207665_101823172 274
75 3300036401 Ga0373937_0509476 Ga0373937_0509476_77_949 274
76 3300037853 Ga0436364_0055992 Ga0436364_0055992_747_1592 274
77 3300037853 Ga0436364_0160422 Ga0436364_0160422_976_1824 274
78 3300037853 Ga0436364_0265234 Ga0436364_0265234_732_1577 274
79 3300037853 Ga0436364_1036453 Ga0436364_1036453_90_938 274
80 3300037853 Ga0436364_1057094 Ga0436364_1057094_38977_39822 274
81 3300037853 Ga0436364_1364922 Ga0436364_1364922_14501_15346 274
82 3300039437 Ga0436365_1895663 Ga0436365_1895663_27_875 274
83 3300039450 Ga0436363_0688010 Ga0436363_0688010_86_934 274
84 3300049581 Ga0501047_0167570 Ga0501047_0167570_631_1476 274
85 3300049591 Ga0501075_0218691 Ga0501075_0218691_436_1281 274
86 3300049592 Ga0501076_0087177 Ga0501076_0087177_1304_2149 274
87 3300049743 Ga0501081_0259170 Ga0501081_0259170_158_1003 274
88 3300005327 Ga0070658_10102824 Ga0070658_101028242 275
89 3300005327 Ga0070658_10197920 Ga0070658_101979202 275
90 3300005327 Ga0070658_10279136 Ga0070658_102791362 275
91 3300005329 Ga0070683_100354766 Ga0070683_1003547662 275
92 3300005337 Ga0070682_100416654 Ga0070682_1004166541 275
93 3300005535 Ga0070684_100037021 Ga0070684_1000370214 275
94 3300005616 Ga0068852_100053692 Ga0068852_1000536922 275
95 3300005617 Ga0068859_100603498 Ga0068859_1006034982 275
96 3300005843 Ga0068860_100008910 Ga0068860_1000089103 275
97 3300006195 Ga0075366_10057908 Ga0075366_100579082 275
98 3300006846 Ga0075430_100267637 Ga0075430_1002676372 275
99 3300006847 Ga0075431_100463306 Ga0075431_1004633062 275
100 3300006931 Ga0097620_100603486 Ga0097620_1006034862 275
101 3300009176 Ga0105242_10317711 Ga0105242_103177111 275
102 3300021384 Ga0213876_10002701 Ga0213876_100027012 275
103 3300025945 Ga0207679_10454691 Ga0207679_104546912 275
104 3300026041 Ga0207639_10143708 Ga0207639_101437082 275
105 3300026089 Ga0207648_10502527 Ga0207648_105025271 275
106 3300028381 Ga0268264_10008063 Ga0268264_100080633 275
107 3300031507 Ga0307509_10165426 Ga0307509_101654262 275
108 3300038741 Ga0400488_43385 Ga0400488_43385_1462_2310 275
109 3300039437 Ga0436365_1521415 Ga0436365_1521415_8906_9754 275
110 3300039438 Ga0436360_1193402 Ga0436360_1193402_302_1153 275
111 3300044656 Ga0466969_0006748 Ga0466969_0006748_3575_4423 275
112 3300045976 Ga0466967_0049517 Ga0466967_0049517_469_1314 275
113 3300047472 Ga0495686_0142777 Ga0495686_0142777_323_1174 275
114 3300049571 Ga0501034_0337249 Ga0501034_0337249_457_1308 275
115 3300049575 Ga0501039_0180980 Ga0501039_0180980_450_1301 275
116 3300049581 Ga0501047_0020170 Ga0501047_0020170_3899_4771 275
117 3300049583 Ga0501067_0030280 Ga0501067_0030280_476_1348 275
118 3300049589 Ga0501073_0265847 Ga0501073_0265847_226_1074 275
119 3300049741 Ga0501079_0125496 Ga0501079_0125496_214_1062 275
120 3300050489 nmdc:mga03683_34342_c1 nmdc:mga03683_34342_c1_606_1454 275
121 3300053139 Ga0500568_0009542 Ga0500568_0009542_2624_3472 275
122 iso_pu_bacteria 2929199973 2929201615 275
123 iso_pu_bacteria 8055909800 8055913308 275
124 iso_pu_bacteria 2643221734 2644737265 288
125 iso_pu_bacteria 2643221736 2644747529 288
126 iso_pu_bacteria 2775506901 2776262139 288
127 iso_pu_bacteria 2818991467 2819717381 288
128 iso_pu_bacteria 2841760612 2841763042 288
129 iso_pu_bacteria 2844104063 2844109088 288
130 iso_pu_bacteria 2851246043 2851251195 288
131 iso_pu_bacteria 2894232714 2894238912 288
132 iso_pu_bacteria 2917699015 2917700163 288
133 iso_pu_bacteria 8057529695 8057532866 288
134 3300009094 Ga0111539_10317746 Ga0111539_103177462 292
135 3300009148 Ga0105243_10030190 Ga0105243_100301903 292
136 3300009553 Ga0105249_10402872 Ga0105249_104028722 292
137 3300013250 Ga0171462_1019 Ga0171462_101996 292
138 3300014326 Ga0157380_10022369 Ga0157380_100223692 292
139 3300025901 Ga0207688_10010881 Ga0207688_100108815 292
140 3300025935 Ga0207709_10324866 Ga0207709_103248662 292
141 3300026075 Ga0207708_10103048 Ga0207708_101030483 292
142 3300041413 Ga0439465_0076343 Ga0439465_0076343_41_931 292
143 3300048920 Ga0496117_0040999 Ga0496117_0040999_160_1050 292
144 3300048929 Ga0496126_0067898 Ga0496126_0067898_283_1173 292
145 3300049571 Ga0501034_0144273 Ga0501034_0144273_1263_2153 292
146 3300050511 nmdc:mga08y16_339923_c1 nmdc:mga08y16_339923_c1_228_1118 292
147 3300045051 Ga0451576_0170969 Ga0451576_0170969_350_1282 293
148 3300005288 Ga0065714_10079020 Ga0065714_100790203 297
149 3300013100 Ga0157373_10000235 Ga0157373_100002358 297

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

85

306

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rlf-assembly1.cif.gz_F crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to mgamppnp 0.753 68 283
8hpn-assembly1.cif.gz_B lpqy-sugabc in state 3 0.7471 5 291
8hpn-assembly1.cif.gz_B lpqy-sugabc in state 3 0.7446 5 291
4tqu-assembly1.cif.gz_N crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.7438 1 290
4jbw-assembly2.cif.gz_H crystal structure of e. coli maltose transporter malfgk2 in complex with its regulatory protein eiiaglc 0.7409 46 282
ID Description Score Start End Superfamily
af_I6Y1U3_2_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8464 3 290 1.10.3720.10
af_O53483_6_271_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8437 2 289 1.10.3720.10
af_I6Y1U3_2_266_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8435 3 290 1.10.3720.10
af_O53483_6_271_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8323 2 289 1.10.3720.10
af_P10906_2_274_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8231 2 289 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A3M4ELQ5-F1-model_v4 sn-glycerol-3-phosphate transport system permease protein UgpE 0.8761 1 297 GO:0005886
GO:0055085
AF-A0A3M4ELQ5-F1-model_v4 sn-glycerol-3-phosphate transport system permease protein UgpE 0.8733 1 297 GO:0005886
GO:0055085
AF-A0A1I6UPM4-F1-model_v4 sn-glycerol-3-phosphate transport system permease protein UgpE 0.8662 1 297 GO:0005886
GO:0055085
AF-A0A7C6YV82-F1-model_v4 ABC transporter permease subunit 0.8649 1 297 GO:0005886
GO:0055085
AF-A0A1I6UPM4-F1-model_v4 sn-glycerol-3-phosphate transport system permease protein UgpE 0.8635 1 297 GO:0005886
GO:0055085

Feature Viewer

pLDDT pTM Quality
77.88 0.72 High
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Predicted Structure (AlphaFold2)

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