F206464

General Info

Members Datasets Scaffolds Average Seq Length
149 23 298 426

Family's Representative Sequence

Representative Sequence 3300031728|Ga0316578_10084976|Ga0316578_100849762
Length 467
Sequence MKWQRLPKLFCNDRSSARYYGLNENRRDRSGVTGMSKSSKDSLSYWEVTAIGVGGMVGGGIFAVLGLSVQLTGGGAPVAFLIAGLVALVTSYSYARLSVTYPSQGGTVAFLDRAFGPGVLTGSLNIMLWISYIVMLSLYAYAFGSYGASFFPPDSTIFWKHILITASVLAITGLNLLNARLIGEAEDWIVLIKVVILVIFIGVGIWGIDSAKLAPPAWSSPLHLIAGGMIVFLAYEGFELIANTAQDVRDAPRILPRAFYSSVVFVIVLYLLVAAVTVGTLPVEKIVAAKDYALAEAARPSLGHTGFILIAIAAMLSTASAINATVYGAARLSYAIAKDGELPAALEKKVWGKPVEGLLITSGATVLIANLVDLSSISMMGSAGFLLIFAAVNGANVALANATRSMRSLSLIGAALCLGALGSLIWQTADSSPGQLWFLFAMISTAFAIEISFRVLAGRTMNLSKTK

Samples

Sample ID Description Type Environment
1 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
2 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
3 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
4 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
5 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
6 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
7 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
8 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
9 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
10 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
11 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
12 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
13 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
14 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
15 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
18 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
19 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
20 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
21 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
22 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere
23 2886627955 Nostoc sp. PA-18-2419 JC1668 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.64
Metatranscriptomes 1.34
Isolates 2.01

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 99.33
Stem 0
Stem Tuber 0
Unclassified 8.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316578_10084976 3300031728 Bacteria 1886
2 Ga0070686_100013423 3300005544 Bacteria 4691
3 Ga0105243_10000017 3300009148 Bacteria 228340
4 Ga0105242_10000006 3300009176 Bacteria 200375
5 Ga0105248_10042326 3300009177 Bacteria 5107
6 Ga0207686_10000007 3300025934 Bacteria 249199
7 Ga0207709_10000012 3300025935 Bacteria 552803
8 Ga0316575_10000081 3300031665 Bacteria 23102
9 Ga0316575_10000239 3300031665 Bacteria 14876
10 Ga0316575_10000405 3300031665 Bacteria 12322
11 Ga0316575_10001190 3300031665 Bacteria 8207
12 Ga0316575_10005987 3300031665 Bacteria 4355
13 Ga0316575_10008033 3300031665 Bacteria 3833
14 Ga0316575_10010384 3300031665 Bacteria 3420
15 Ga0316575_10021051 3300031665 Bacteria 2506
16 Ga0316575_10022165 3300031665 Unclassified 2449
17 Ga0316575_10022356 3300031665 Bacteria 2439
18 Ga0316575_10050255 3300031665 Unclassified 1660
19 Ga0316579_10000373 3300031691 Bacteria 14113
20 Ga0316579_10000452 3300031691 Bacteria 13185
21 Ga0316579_10001303 3300031691 Bacteria 9005
22 Ga0316579_10001472 3300031691 Bacteria 8559
23 Ga0316579_10001937 3300031691 Bacteria 7713
24 Ga0316579_10004883 3300031691 Bacteria 5363
25 Ga0316579_10007667 3300031691 Bacteria 4467
26 Ga0316579_10010163 3300031691 Bacteria 3972
27 Ga0316579_10017112 3300031691 Bacteria 3177
28 Ga0316579_10023488 3300031691 Bacteria 2769
29 Ga0316579_10035793 3300031691 Bacteria 2289
30 Ga0316579_10064732 3300031691 Bacteria 1724
31 Ga0316576_10006211 3300031727 Bacteria 7413
32 Ga0316576_10011151 3300031727 Bacteria 5873
33 Ga0316576_10012222 3300031727 Bacteria 5664
34 Ga0316576_10021355 3300031727 Bacteria 4476
35 Ga0316576_10040462 3300031727 Bacteria 3351
36 Ga0316576_10049323 3300031727 Bacteria 3057
37 Ga0316576_10054943 3300031727 Bacteria 2905
38 Ga0316576_10062668 3300031727 Bacteria 2728
39 Ga0316576_10072876 3300031727 Bacteria 2536
40 Ga0316576_10091409 3300031727 Bacteria 2268
41 Ga0316576_10105904 3300031727 Unclassified 2105
42 Ga0316576_10111604 3300031727 Bacteria 2049
43 Ga0316576_10119802 3300031727 Bacteria 1975
44 Ga0316578_10000582 3300031728 Bacteria 12672
45 Ga0316578_10000737 3300031728 Bacteria 11899
46 Ga0316578_10001137 3300031728 Bacteria 10433
47 Ga0316578_10002422 3300031728 Bacteria 8175
48 Ga0316578_10003670 3300031728 Bacteria 7082
49 Ga0316578_10006858 3300031728 Bacteria 5658
50 Ga0316578_10007320 3300031728 Bacteria 5526
51 Ga0316578_10011386 3300031728 Bacteria 4651
52 Ga0316578_10017636 3300031728 Bacteria 3890
53 Ga0316578_10022073 3300031728 Bacteria 3543
54 Ga0316578_10027261 3300031728 Bacteria 3228
55 Ga0316578_10041657 3300031728 Bacteria 2660
56 Ga0316578_10048655 3300031728 Unclassified 2476
57 Ga0316578_10074823 3300031728 Bacteria 2008
58 Ga0316578_10076318 3300031728 Unclassified 1990
59 Ga0316578_10095869 3300031728 Bacteria 1776
60 Ga0316578_10102065 3300031728 Bacteria 1720
61 Ga0316577_10005944 3300031733 Bacteria 6427
62 Ga0316577_10010497 3300031733 Bacteria 5003
63 Ga0316577_10011933 3300031733 Bacteria 4721
64 Ga0316577_10012488 3300031733 Bacteria 4628
65 Ga0316577_10014424 3300031733 Bacteria 4337
66 Ga0316577_10015952 3300031733 Bacteria 4135
67 Ga0316577_10019162 3300031733 Bacteria 3786
68 Ga0316577_10021291 3300031733 Bacteria 3597
69 Ga0316577_10022348 3300031733 Bacteria 3512
70 Ga0316577_10023916 3300031733 Bacteria 3393
71 Ga0316577_10040485 3300031733 Unclassified 2606
72 Ga0316583_10000279 3300032133 Bacteria 14228
73 Ga0316583_10000641 3300032133 Bacteria 10733
74 Ga0316583_10002088 3300032133 Bacteria 6863
75 Ga0316583_10002715 3300032133 Bacteria 6186
76 Ga0316583_10002808 3300032133 Bacteria 6091
77 Ga0316583_10003683 3300032133 Bacteria 5419
78 Ga0316583_10004857 3300032133 Bacteria 4801
79 Ga0316583_10007809 3300032133 Bacteria 3857
80 Ga0316583_10009119 3300032133 Bacteria 3578
81 Ga0316583_10009487 3300032133 Bacteria 3504
82 Ga0316583_10021416 3300032133 Bacteria 2317
83 Ga0316583_10035957 3300032133 Bacteria 1758
84 Ga0316583_10053079 3300032133 Bacteria 1426
85 Ga0316585_10001295 3300032137 Bacteria 6555
86 Ga0316585_10001662 3300032137 Bacteria 5899
87 Ga0316585_10006844 3300032137 Bacteria 3269
88 Ga0316585_10020681 3300032137 Bacteria 2016
89 Ga0316580_10000468 3300032139 Bacteria 9328
90 Ga0316580_10000678 3300032139 Bacteria 8135
91 Ga0316580_10000754 3300032139 Bacteria 7848
92 Ga0316580_10001713 3300032139 Bacteria 5845
93 Ga0316580_10003449 3300032139 Bacteria 4490
94 Ga0316580_10007502 3300032139 Bacteria 3249
95 Ga0316580_10032574 3300032139 Bacteria 1613
96 Ga0316593_10002591 3300032168 Bacteria 4326
97 Ga0316596_1002122 3300033541 Bacteria 4188
98 Ga0316574_0000324 3300035398 Bacteria 18289
99 Ga0316574_0000599 3300035398 Bacteria 14992
100 Ga0316574_0002184 3300035398 Bacteria 9704
101 Ga0316574_0002395 3300035398 Bacteria 9387
102 Ga0316574_0004330 3300035398 Bacteria 7416
103 Ga0316574_0004669 3300035398 Bacteria 7214
104 Ga0316574_0019861 3300035398 Bacteria 3971
105 Ga0316574_0022349 3300035398 Unclassified 3764
106 Ga0316574_0033384 3300035398 Bacteria 3132
107 Ga0316574_0036892 3300035398 Unclassified 2994
108 Ga0316574_0043400 3300035398 Unclassified 2778
109 Ga0316574_0067511 3300035398 Bacteria 2254
110 Ga0316582_0000271 3300036647 Bacteria 17650
111 Ga0316582_0000413 3300036647 Bacteria 15602
112 Ga0316582_0001749 3300036647 Bacteria 9775
113 Ga0316582_0002135 3300036647 Bacteria 9147
114 Ga0316582_0002773 3300036647 Bacteria 8342
115 Ga0316582_0004189 3300036647 Bacteria 7232
116 Ga0316582_0008646 3300036647 Bacteria 5481
117 Ga0316582_0008900 3300036647 Bacteria 5419
118 Ga0316582_0010625 3300036647 Bacteria 5051
119 Ga0316582_0015042 3300036647 Bacteria 4410
120 Ga0316582_0031731 3300036647 Bacteria 3232
121 Ga0316582_0033877 3300036647 Unclassified 3141
122 Ga0316582_0034952 3300036647 Bacteria 3099
123 Ga0316582_0045093 3300036647 Bacteria 2775
124 Ga0316582_0063886 3300036647 Bacteria 2366
125 Ga0316582_0128047 3300036647 Bacteria 1703
126 Ga0316582_0144633 3300036647 Unclassified 1604
127 Ga0316584_0000042 3300036712 Bacteria 45668
128 Ga0316584_0000210 3300036712 Bacteria 28809
129 Ga0316584_0000830 3300036712 Bacteria 17398
130 Ga0316584_0002017 3300036712 Bacteria 12700
131 Ga0316584_0005335 3300036712 Bacteria 8614
132 Ga0316584_0009521 3300036712 Bacteria 6746
133 Ga0316584_0010362 3300036712 Bacteria 6511
134 Ga0316584_0012067 3300036712 Bacteria 6085
135 Ga0316584_0013758 3300036712 Bacteria 5736
136 Ga0316584_0019694 3300036712 Bacteria 4879
137 Ga0316584_0022166 3300036712 Bacteria 4630
138 Ga0316584_0022357 3300036712 Bacteria 4611
139 Ga0316584_0028846 3300036712 Bacteria 4096
140 Ga0316584_0050232 3300036712 Bacteria 3117
141 Ga0316584_0059018 3300036712 Bacteria 2873
142 Ga0316584_0068867 3300036712 Bacteria 2653
143 Ga0316584_0150451 3300036712 Archaea 1733
144 Ga0316584_0233003 3300036712 Unclassified 1349
145 Ga0316581_0002836 3300037588 Bacteria 4231
146 Ga0316581_0009101 3300037588 Bacteria 2721
147 2523387098 2523231044 Bacteria 6434991
148 2524001190 2523533628 Bacteria 4098242
149 2886632660 2886627955 Bacteria 7618130
150 Ga0316578_10084976
151 Ga0070686_100013423
152 Ga0105243_10000017
153 Ga0105242_10000006
154 Ga0105248_10042326
155 Ga0207686_10000007
156 Ga0207709_10000012
157 Ga0316575_10000081
158 Ga0316575_10000239
159 Ga0316575_10000405
160 Ga0316575_10001190
161 Ga0316575_10005987
162 Ga0316575_10008033
163 Ga0316575_10010384
164 Ga0316575_10021051
165 Ga0316575_10022165
166 Ga0316575_10022356
167 Ga0316575_10050255
168 Ga0316579_10000373
169 Ga0316579_10000452
170 Ga0316579_10001303
171 Ga0316579_10001472
172 Ga0316579_10001937
173 Ga0316579_10004883
174 Ga0316579_10007667
175 Ga0316579_10010163
176 Ga0316579_10017112
177 Ga0316579_10023488
178 Ga0316579_10035793
179 Ga0316579_10064732
180 Ga0316576_10006211
181 Ga0316576_10011151
182 Ga0316576_10012222
183 Ga0316576_10021355
184 Ga0316576_10040462
185 Ga0316576_10049323
186 Ga0316576_10054943
187 Ga0316576_10062668
188 Ga0316576_10072876
189 Ga0316576_10091409
190 Ga0316576_10105904
191 Ga0316576_10111604
192 Ga0316576_10119802
193 Ga0316578_10000582
194 Ga0316578_10000737
195 Ga0316578_10001137
196 Ga0316578_10002422
197 Ga0316578_10003670
198 Ga0316578_10006858
199 Ga0316578_10007320
200 Ga0316578_10011386
201 Ga0316578_10017636
202 Ga0316578_10022073
203 Ga0316578_10027261
204 Ga0316578_10041657
205 Ga0316578_10048655
206 Ga0316578_10074823
207 Ga0316578_10076318
208 Ga0316578_10095869
209 Ga0316578_10102065
210 Ga0316577_10005944
211 Ga0316577_10010497
212 Ga0316577_10011933
213 Ga0316577_10012488
214 Ga0316577_10014424
215 Ga0316577_10015952
216 Ga0316577_10019162
217 Ga0316577_10021291
218 Ga0316577_10022348
219 Ga0316577_10023916
220 Ga0316577_10040485
221 Ga0316583_10000279
222 Ga0316583_10000641
223 Ga0316583_10002088
224 Ga0316583_10002715
225 Ga0316583_10002808
226 Ga0316583_10003683
227 Ga0316583_10004857
228 Ga0316583_10007809
229 Ga0316583_10009119
230 Ga0316583_10009487
231 Ga0316583_10021416
232 Ga0316583_10035957
233 Ga0316583_10053079
234 Ga0316585_10001295
235 Ga0316585_10001662
236 Ga0316585_10006844
237 Ga0316585_10020681
238 Ga0316580_10000468
239 Ga0316580_10000678
240 Ga0316580_10000754
241 Ga0316580_10001713
242 Ga0316580_10003449
243 Ga0316580_10007502
244 Ga0316580_10032574
245 Ga0316593_10002591
246 Ga0316596_1002122
247 Ga0316574_0000324
248 Ga0316574_0000599
249 Ga0316574_0002184
250 Ga0316574_0002395
251 Ga0316574_0004330
252 Ga0316574_0004669
253 Ga0316574_0019861
254 Ga0316574_0022349
255 Ga0316574_0033384
256 Ga0316574_0036892
257 Ga0316574_0043400
258 Ga0316574_0067511
259 Ga0316582_0000271
260 Ga0316582_0000413
261 Ga0316582_0001749
262 Ga0316582_0002135
263 Ga0316582_0002773
264 Ga0316582_0004189
265 Ga0316582_0008646
266 Ga0316582_0008900
267 Ga0316582_0010625
268 Ga0316582_0015042
269 Ga0316582_0031731
270 Ga0316582_0033877
271 Ga0316582_0034952
272 Ga0316582_0045093
273 Ga0316582_0063886
274 Ga0316582_0128047
275 Ga0316582_0144633
276 Ga0316584_0000042
277 Ga0316584_0000210
278 Ga0316584_0000830
279 Ga0316584_0002017
280 Ga0316584_0005335
281 Ga0316584_0009521
282 Ga0316584_0010362
283 Ga0316584_0012067
284 Ga0316584_0013758
285 Ga0316584_0019694
286 Ga0316584_0022166
287 Ga0316584_0022357
288 Ga0316584_0028846
289 Ga0316584_0050232
290 Ga0316584_0059018
291 Ga0316584_0068867
292 Ga0316584_0150451
293 Ga0316584_0233003
294 Ga0316581_0002836
295 Ga0316581_0009101
296 2523387098
297 2524001190
298 2886632660

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00324

AA_permease

Amino acid permease

47

447

0.87

PF13520

AA_permease_2

Amino acid permease

43

449

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gi9-assembly1.cif.gz_C crystal structure of apct transporter bound to 7f11 monoclonal fab fragment 0.898 13 435
3gia-assembly1.cif.gz_A crystal structure of apct transporter 0.8925 13 436
3gi8-assembly1.cif.gz_C crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment 0.8915 13 433
3gia-assembly1.cif.gz_A crystal structure of apct transporter 0.867 13 436
3gi9-assembly1.cif.gz_C crystal structure of apct transporter bound to 7f11 monoclonal fab fragment 0.8607 13 435
ID Description Score Start End Superfamily
af_P77400_8_430_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9381 17 435 1.20.1740.10
af_P77400_8_430_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9209 17 435 1.20.1740.10
3giaA00 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8925 13 436 1.20.1740.10
af_B5DFJ0_32_432_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8866 14 374 1.20.1740.10
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8842 14 443 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A1W1BJ22-F1-model_v4 Amino acid transporter 0.9644 14 436 GO:0016020
GO:0055085
AF-A0A2D5ULH8-F1-model_v4 Amino acid transporter 0.962 11 441 GO:0005886
GO:0022857
AF-A0A2D5ULH8-F1-model_v4 Amino acid transporter 0.9555 11 441 GO:0005886
GO:0022857
AF-A0A2Z3J1Y5-F1-model_v4 Amino acid transporter 0.9544 1 432 GO:0005886
GO:0022857
AF-A0A2G6F5P3-F1-model_v4 Amino acid transporter 0.952 12 432 GO:0005886
GO:0022857

Map