F204646

General Info

Members Datasets Scaffolds Average Seq Length
148 129 124 354

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8055157932|8055162172
Length 394
Sequence VTAPTQTADAQPAPSRTVDAAADAEAPPLLRPHAEQAYAGELAALAAADTRVRPPSWRLSPWAVVTYLLGGVLEDGTVISAKYIGSRRLVEVAVATLATDRALLLLGSPGTAKTWLSEHLAAAISGDSTLVVQGTAGTSEDAVRYGWNYARLIAEGPSHDALVPSPVMRAMTRGSVARVEELTRMGAEVQDALITVLSEKTLPIPELSSEIQAVAGFTVIATANDRDRGVNEMSSALRRRFNTVILPLPATEDAEVEIVTRRVAEIGRALALPDEPPALDEVRRVVRIFRELRAGVTADGRTTVRTPTATLSTAEAISVITGGMTLATHFGDGQLRAEDIAAGLLGAVIKDPSTDPVAWQEYLEGVVRARPGWRDLYRACQDLADDGAVAAGGA

Samples

Sample ID Description Type Environment
1 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
2 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
3 2558860280 Kutzneria sp. 744 Isolate Unclassified
4 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
5 2619618881 Frankia sp. ACN1ag Isolate Unclassified
6 2619619003 Frankia sp. CpI1-P Isolate Nodule
7 2626541554 Frankia sp. AvcI.1 Isolate Nodule
8 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
9 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
10 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
11 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
12 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
13 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
14 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
15 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
16 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
17 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
18 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
19 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
20 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
21 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
22 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
24 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
25 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
28 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
29 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
30 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
31 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
32 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
33 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
36 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
37 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
41 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
42 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
43 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
55 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
75 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
77 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
78 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
79 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
80 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
81 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
82 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
83 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
84 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
91 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
94 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
95 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
96 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
97 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
98 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
99 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
100 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
101 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
109 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
110 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
111 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
112 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
113 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
114 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
115 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
116 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
117 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
118 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
119 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
120 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
121 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
125 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
126 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
127 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
128 8054920844 Frankia tisae Agncl-8 Isolate Nodule
129 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.78
Metatranscriptomes 0
Isolates 16.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.38
Nodule 4.05
Rhizoplane 6.08
Rhizosphere 74.32
Stem 0
Stem Tuber 0
Unclassified 12.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1001785 3300002773 Bacteria 8753
2 JGI25151J46595_10034838 3300003187 Bacteria 1920
3 JGI25406J46586_10018583 3300003203 Bacteria 2854
4 rootH2_10056024 3300003320 Bacteria 5342
5 Ga0070668_100006545 3300005347 Bacteria 8632
6 Ga0070669_100120582 3300005353 Bacteria 2000
7 Ga0070667_100266041 3300005367 Bacteria 1536
8 Ga0070714_100082139 3300005435 Bacteria 2807
9 Ga0070710_10000257 3300005437 Bacteria 25154
10 Ga0070700_100003732 3300005441 Bacteria 7873
11 Ga0070708_100007724 3300005445 Bacteria 8615
12 Ga0070706_100012051 3300005467 Bacteria 8022
13 Ga0070707_100009478 3300005468 Bacteria 9040
14 Ga0070679_100015343 3300005530 Bacteria 7362
15 Ga0068853_100011520 3300005539 Bacteria 7189
16 Ga0070695_100032371 3300005545 Bacteria 3269
17 Ga0070665_100001114 3300005548 Bacteria 33120
18 Ga0070704_100054341 3300005549 Bacteria 2834
19 Ga0068855_100003311 3300005563 Bacteria 19718
20 Ga0068856_100003930 3300005614 Bacteria 14898
21 Ga0068870_10198408 3300005840 Bacteria 1215
22 Ga0068863_100110550 3300005841 Bacteria 2617
23 Ga0081539_10000111 3300005985 Bacteria 190245
24 Ga0081539_10002565 3300005985 Bacteria 25166
25 Ga0075434_100110561 3300006871 Bacteria 2759
26 Ga0105240_10001981 3300009093 Bacteria 33825
27 Ga0105240_10020827 3300009093 Bacteria 8734
28 Ga0111539_10004558 3300009094 Bacteria 18114
29 Ga0111539_10020438 3300009094 Bacteria 8154
30 Ga0105245_10142294 3300009098 Bacteria 2260
31 Ga0114129_10282565 3300009147 Bacteria 2217
32 Ga0105241_10053362 3300009174 Bacteria 3091
33 Ga0105238_10067830 3300009551 Bacteria 3568
34 Ga0105249_10074090 3300009553 Bacteria 3150
35 Ga0163163_10089304 3300014325 Bacteria 3094
36 Ga0157377_10012598 3300014745 Bacteria 4256
37 Ga0157379_10037831 3300014968 Bacteria 4304
38 Ga0207425_1007045 3300025245 Bacteria 3010
39 Ga0209129_1000046 3300025258 Bacteria 271702
40 Ga0209025_1002727 3300025294 Bacteria 17924
41 Ga0207692_10004958 3300025898 Bacteria 5297
42 Ga0207645_10073422 3300025907 Bacteria 2190
43 Ga0207643_10193879 3300025908 Bacteria 1234
44 Ga0207684_10006025 3300025910 Bacteria 11093
45 Ga0207684_10083081 3300025910 Bacteria 2728
46 Ga0207707_10063343 3300025912 Bacteria 3218
47 Ga0207707_10127713 3300025912 Bacteria 2223
48 Ga0207695_10016314 3300025913 Bacteria 8696
49 Ga0207695_10038496 3300025913 Bacteria 5147
50 Ga0207652_10084715 3300025921 Bacteria 2777
51 Ga0207646_10006767 3300025922 Bacteria 11796
52 Ga0207646_10089937 3300025922 Bacteria 2748
53 Ga0207664_10016751 3300025929 Bacteria 5354
54 Ga0207669_10148429 3300025937 Bacteria 1639
55 Ga0207689_10236556 3300025942 Bacteria 1510
56 Ga0207667_10011416 3300025949 Bacteria 10326
57 Ga0207668_10006247 3300025972 Bacteria 7036
58 Ga0207639_10027009 3300026041 Bacteria 4177
59 Ga0207678_10000090 3300026067 Bacteria 75551
60 Ga0207708_10040297 3300026075 Bacteria 3561
61 Ga0207702_10018500 3300026078 Bacteria 5764
62 Ga0207428_10039207 3300027907 Bacteria 3846
63 Ga0207428_10192259 3300027907 Bacteria 1538
64 Ga0268266_10004254 3300028379 Bacteria 13770
65 Ga0307517_10001644 3300028786 Bacteria 36929
66 Ga0307511_10000634 3300030521 Bacteria 37652
67 Ga0307511_10001572 3300030521 Bacteria 24234
68 Ga0307511_10094305 3300030521 Bacteria 2007
69 Ga0307512_10097978 3300030522 Bacteria 2003
70 Ga0316177_1175795 3300030731 Bacteria 2905
71 Ga0316176_1090281 3300030732 Bacteria 6634
72 Ga0316180_1015405 3300030736 Bacteria 4288
73 Ga0265329_10000928 3300031242 Bacteria 14720
74 Ga0307408_100062454 3300031548 Bacteria 2722
75 Ga0316576_10038400 3300031727 Bacteria 3433
76 Ga0307405_10138336 3300031731 Bacteria 1694
77 Ga0307413_10026326 3300031824 Bacteria 3203
78 Ga0307410_10159899 3300031852 Bacteria 1687
79 Ga0307406_10100870 3300031901 Bacteria 1966
80 Ga0307409_100060709 3300031995 Bacteria 2950
81 Ga0307409_100103127 3300031995 Bacteria 2372
82 Ga0307409_100287076 3300031995 Bacteria 1524
83 Ga0307507_10026021 3300033179 Bacteria 6321
84 Ga0316574_0029887 3300035398 Bacteria 3295
85 Ga0395898_0108466 3300037466 Bacteria 2662
86 Ga0395905_0107142 3300037471 Bacteria 2624
87 Ga0439436_0009838 3300041404 Bacteria 2926
88 Ga0451837_0262225 3300041494 Bacteria 1445
89 Ga0451837_1020833 3300041494 Bacteria 1414
90 Ga0451577_0008303 3300042876 Bacteria 10105
91 Ga0466972_0008904 3300044658 Bacteria 5034
92 Ga0466965_0017648 3300044683 Bacteria 3414
93 Ga0466966_0006086 3300044684 Bacteria 7972
94 Ga0466966_0011628 3300044684 Bacteria 5835
95 Ga0466966_0165327 3300044684 Bacteria 1346
96 Ga0466961_0111869 3300044693 Bacteria 1718
97 Ga0466963_0007852 3300044694 Bacteria 6386
98 Ga0453684_0001842 3300044712 Bacteria 55404
99 Ga0453684_0017694 3300044712 Bacteria 11012
100 Ga0466970_0007341 3300044765 Bacteria 5522
101 Ga0466970_0115948 3300044765 Bacteria 1465
102 Ga0466970_0141348 3300044765 Bacteria 1326
103 Ga0466960_0030129 3300044901 Bacteria 2495
104 Ga0466959_0097120 3300045049 Bacteria 2111
105 Ga0451576_0000002 3300045051 Bacteria 1670975
106 Ga0466967_0419961 3300045976 Bacteria 1303
107 Ga0495603_0108416 3300046455 Bacteria 1621
108 Ga0495668_0085243 3300046616 Unclassified 1733
109 Ga0496102_0024300 3300048905 Bacteria 5386
110 Ga0496104_0183892 3300048907 Bacteria 2000
111 Ga0496105_0064555 3300048908 Bacteria 3021
112 Ga0496106_0153489 3300048909 Bacteria 1817
113 Ga0496108_0096879 3300048911 Bacteria 2513
114 Ga0496110_0076889 3300048913 Bacteria 2968
115 Ga0496111_0034733 3300048914 Bacteria 3601
116 Ga0496112_0147283 3300048915 Bacteria 2323
117 Ga0496114_0045113 3300048917 Bacteria 3661
118 Ga0496126_0392603 3300048929 Bacteria 1127
119 Ga0501068_0024835 3300049584 Bacteria 3521
120 Ga0501070_0208926 3300049586 Bacteria 1603
121 Ga0501076_0069225 3300049592 Bacteria 2820
122 nmdc:mga08y16_106631_c1 3300050511 Bacteria 2917
123 nmdc:mga08y16_1812_c1 3300050511 Bacteria 21659
124 Ga0530510_0015311 3300061734 Bacteria 5417

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046616 Ga0495668_0085243 Ga0495668_0085243_700_1650 296
2 3300048909 Ga0496106_0153489 Ga0496106_0153489_31_999 296
3 3300025937 Ga0207669_10148429 Ga0207669_101484292 301
4 3300041494 Ga0451837_0262225 Ga0451837_0262225_37_1002 301
5 3300030521 Ga0307511_10001572 Ga0307511_1000157211 312
6 3300005530 Ga0070679_100015343 Ga0070679_1000153434 317
7 3300005563 Ga0068855_100003311 Ga0068855_10000331110 317
8 3300005840 Ga0068870_10198408 Ga0068870_101984082 317
9 3300009093 Ga0105240_10001981 Ga0105240_1000198116 317
10 3300025908 Ga0207643_10193879 Ga0207643_101938791 317
11 3300025912 Ga0207707_10127713 Ga0207707_101277132 317
12 3300025913 Ga0207695_10016314 Ga0207695_100163147 317
13 3300025921 Ga0207652_10084715 Ga0207652_100847152 317
14 3300025949 Ga0207667_10011416 Ga0207667_100114162 317
15 3300048929 Ga0496126_0392603 Ga0496126_0392603_24_1094 317
16 3300035398 Ga0316574_0029887 Ga0316574_0029887_913_2046 318
17 3300044712 Ga0453684_0001842 Ga0453684_0001842_51911_52993 318
18 3300044712 Ga0453684_0017694 Ga0453684_0017694_4989_6071 318
19 3300009093 Ga0105240_10020827 Ga0105240_100208276 319
20 3300009174 Ga0105241_10053362 Ga0105241_100533622 319
21 3300025913 Ga0207695_10038496 Ga0207695_100384962 319
22 3300005614 Ga0068856_100003930 Ga0068856_10000393012 320
23 3300026078 Ga0207702_10018500 Ga0207702_100185006 320
24 3300031731 Ga0307405_10138336 Ga0307405_101383361 320
25 3300031901 Ga0307406_10100870 Ga0307406_101008702 320
26 3300041494 Ga0451837_1020833 Ga0451837_1020833_165_1238 320
27 3300003320 rootH2_10056024 rootH2_100560243 323
28 3300005467 Ga0070706_100012051 Ga0070706_1000120513 323
29 3300025910 Ga0207684_10006025 Ga0207684_1000602511 323
30 3300044765 Ga0466970_0115948 Ga0466970_0115948_276_1418 323
31 3300003203 JGI25406J46586_10018583 JGI25406J46586_100185832 324
32 3300005441 Ga0070700_100003732 Ga0070700_1000037323 324
33 3300005548 Ga0070665_100001114 Ga0070665_10000111412 324
34 3300005985 Ga0081539_10000111 Ga0081539_1000011191 324
35 3300009094 Ga0111539_10020438 Ga0111539_100204386 324
36 3300009098 Ga0105245_10142294 Ga0105245_101422942 324
37 3300009553 Ga0105249_10074090 Ga0105249_100740902 324
38 3300025942 Ga0207689_10236556 Ga0207689_102365562 324
39 3300026075 Ga0207708_10040297 Ga0207708_100402973 324
40 3300027907 Ga0207428_10192259 Ga0207428_101922592 324
41 3300028379 Ga0268266_10004254 Ga0268266_1000425412 324
42 3300044684 Ga0466966_0011628 Ga0466966_0011628_1731_2834 324
43 3300045049 Ga0466959_0097120 Ga0466959_0097120_513_1616 324
44 3300050511 nmdc:mga08y16_106631_c1 nmdc:mga08y16_106631_c1_1734_2828 324
45 3300005347 Ga0070668_100006545 Ga0070668_1000065452 325
46 3300005353 Ga0070669_100120582 Ga0070669_1001205822 325
47 3300005445 Ga0070708_100007724 Ga0070708_1000077245 325
48 3300005468 Ga0070707_100009478 Ga0070707_1000094785 325
49 3300005985 Ga0081539_10002565 Ga0081539_100025658 325
50 3300006871 Ga0075434_100110561 Ga0075434_1001105612 325
51 3300009147 Ga0114129_10282565 Ga0114129_102825652 325
52 3300025907 Ga0207645_10073422 Ga0207645_100734222 325
53 3300025910 Ga0207684_10083081 Ga0207684_100830812 325
54 3300025922 Ga0207646_10006767 Ga0207646_100067677 325
55 3300025972 Ga0207668_10006247 Ga0207668_100062474 325
56 3300030522 Ga0307512_10097978 Ga0307512_100979782 325
57 3300033179 Ga0307507_10026021 Ga0307507_100260212 325
58 3300061734 Ga0530510_0015311 Ga0530510_0015311_2601_3698 325
59 3300025922 Ga0207646_10089937 Ga0207646_100899371 326
60 3300031824 Ga0307413_10026326 Ga0307413_100263262 326
61 3300037471 Ga0395905_0107142 Ga0395905_0107142_406_1488 327
62 3300031242 Ga0265329_10000928 Ga0265329_1000092814 328
63 3300031995 Ga0307409_100287076 Ga0307409_1002870761 328
64 3300042876 Ga0451577_0008303 Ga0451577_0008303_6005_7093 328
65 3300031727 Ga0316576_10038400 Ga0316576_100384002 329
66 3300031995 Ga0307409_100060709 Ga0307409_1000607092 329
67 3300005367 Ga0070667_100266041 Ga0070667_1002660412 334
68 3300009094 Ga0111539_10004558 Ga0111539_1000455812 334
69 3300027907 Ga0207428_10039207 Ga0207428_100392073 334
70 3300050511 nmdc:mga08y16_1812_c1 nmdc:mga08y16_1812_c1_3481_4581 334
71 3300044694 Ga0466963_0007852 Ga0466963_0007852_3714_4904 335
72 3300005545 Ga0070695_100032371 Ga0070695_1000323712 337
73 3300005549 Ga0070704_100054341 Ga0070704_1000543412 337
74 3300025912 Ga0207707_10063343 Ga0207707_100633432 337
75 iso_pu_bacteria 2917736166 2917739320 337
76 3300028786 Ga0307517_10001644 Ga0307517_1000164433 338
77 iso_pu_bacteria 2751185734 2753069238 338
78 iso_pu_bacteria 2791354901 2791916011 338
79 iso_pu_bacteria 2870721527 2870728287 338
80 3300044684 Ga0466966_0165327 Ga0466966_0165327_39_1124 339
81 3300044765 Ga0466970_0141348 Ga0466970_0141348_198_1283 339
82 iso_pu_bacteria 2816332139 2816506858 339
83 iso_pu_bacteria 2818991449 2819617916 339
84 iso_pu_bacteria 2904439833 2904442065 339
85 iso_pu_bacteria 2904601388 2904601958 339
86 3300045051 Ga0451576_0000002 Ga0451576_0000002_353776_354858 340
87 3300045976 Ga0466967_0419961 Ga0466967_0419961_89_1171 340
88 3300048915 Ga0496112_0147283 Ga0496112_0147283_963_2045 340
89 iso_pu_bacteria 2551306166 2552110239 340
90 iso_pu_bacteria 2558860280 2559427851 340
91 iso_pu_bacteria 8047710418 8047717590 340
92 3300005437 Ga0070710_10000257 Ga0070710_100002577 341
93 3300025898 Ga0207692_10004958 Ga0207692_100049585 341
94 3300026067 Ga0207678_10000090 Ga0207678_100000903 341
95 3300030731 Ga0316177_1175795 Ga0316177_11757952 341
96 3300030732 Ga0316176_1090281 Ga0316176_10902813 341
97 3300030736 Ga0316180_1015405 Ga0316180_10154052 341
98 3300044658 Ga0466972_0008904 Ga0466972_0008904_1136_2221 341
99 3300044683 Ga0466965_0017648 Ga0466965_0017648_497_1582 341
100 3300044901 Ga0466960_0030129 Ga0466960_0030129_931_2016 341
101 iso_pu_bacteria 2523231044 2523388018 342
102 iso_pu_bacteria 2818991472 2819742344 342
103 3300005539 Ga0068853_100011520 Ga0068853_1000115205 343
104 3300005841 Ga0068863_100110550 Ga0068863_1001105502 343
105 3300009551 Ga0105238_10067830 Ga0105238_100678302 343
106 3300014325 Ga0163163_10089304 Ga0163163_100893042 343
107 3300014968 Ga0157379_10037831 Ga0157379_100378312 343
108 3300026041 Ga0207639_10027009 Ga0207639_100270093 343
109 3300030521 Ga0307511_10000634 Ga0307511_100006342 343
110 3300044684 Ga0466966_0006086 Ga0466966_0006086_3676_4773 343
111 3300044765 Ga0466970_0007341 Ga0466970_0007341_326_1423 343
112 3300046455 Ga0495603_0108416 Ga0495603_0108416_77_1171 343
113 3300048905 Ga0496102_0024300 Ga0496102_0024300_3270_4361 343
114 3300048907 Ga0496104_0183892 Ga0496104_0183892_283_1374 343
115 3300048908 Ga0496105_0064555 Ga0496105_0064555_648_1739 343
116 3300048911 Ga0496108_0096879 Ga0496108_0096879_1195_2286 343
117 3300048913 Ga0496110_0076889 Ga0496110_0076889_689_1780 343
118 3300048914 Ga0496111_0034733 Ga0496111_0034733_760_1851 343
119 3300048917 Ga0496114_0045113 Ga0496114_0045113_1703_2794 343
120 3300014745 Ga0157377_10012598 Ga0157377_100125983 344
121 3300049584 Ga0501068_0024835 Ga0501068_0024835_2265_3362 344
122 3300049586 Ga0501070_0208926 Ga0501070_0208926_354_1454 344
123 iso_pu_bacteria 8054107350 8054112053 344
124 3300005435 Ga0070714_100082139 Ga0070714_1000821392 345
125 3300025929 Ga0207664_10016751 Ga0207664_100167512 345
126 3300030521 Ga0307511_10094305 Ga0307511_100943052 345
127 3300031852 Ga0307410_10159899 Ga0307410_101598992 345
128 3300031995 Ga0307409_100103127 Ga0307409_1001031272 345
129 3300049592 Ga0501076_0069225 Ga0501076_0069225_679_1806 345
130 iso_pu_bacteria 2687453743 2689990610 345
131 iso_pu_bacteria 8054920844 8054921892 345
132 3300002773 JGI25152J39213_1001785 JGI25152J39213_10017856 348
133 3300003187 JGI25151J46595_10034838 JGI25151J46595_100348382 348
134 3300025245 Ga0207425_1007045 Ga0207425_10070452 348
135 3300025258 Ga0209129_1000046 Ga0209129_100004614 348
136 3300025294 Ga0209025_1002727 Ga0209025_10027276 348
137 3300031548 Ga0307408_100062454 Ga0307408_1000624542 348
138 3300037466 Ga0395898_0108466 Ga0395898_0108466_832_1950 348
139 3300041404 Ga0439436_0009838 Ga0439436_0009838_147_1253 348
140 3300044693 Ga0466961_0111869 Ga0466961_0111869_109_1227 348
141 iso_pu_bacteria 2579778521 2579855466 348
142 iso_pu_bacteria 2619618881 2619855586 348
143 iso_pu_bacteria 2619619003 2620350860 348
144 iso_pu_bacteria 2626541554 2626634428 348
145 iso_pu_bacteria 2684623035 2686534346 348
146 iso_pu_bacteria 2895880812 2895888761 348
147 iso_pu_bacteria 8054913762 8054916051 348
148 iso_pu_bacteria 8055157932 8055162172 348

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07728

AAA_5

AAA domain (dynein-related subfamily)

102

241

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
7uix-assembly1.cif.gz_B clpap complex bound to clps n-terminal extension, class i 0.4166 190 343
6l8d-assembly1.cif.gz_B hexameric structure of the atpase subunit of magnesium chelatase 0.2648 197 327
5f3p-assembly1.cif.gz_B crystal structure of a noncanonical dicer protein from entamoeba histolytica 0.2629 213 343
8kg9-assembly1.cif.gz_2 yeast replisome in state iii 0.2597 17 323
3qbr-assembly1.cif.gz_A bakbh3 in complex with sja 0.2596 188 339
ID Description Score Start End Superfamily
af_P33348_239_362_1.10.8.80 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Magnesium chelatase subunit I, C-Terminal domain 0.7568 219 344 1.10.8.80
af_P33348_239_362_1.10.8.80 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Magnesium chelatase subunit I, C-Terminal domain 0.7406 219 344 1.10.8.80
1a9cA01 Mainly Alpha;Orthogonal Bundle;GTP Cyclohydrolase I; Chain A, domain 1;GTP cyclohydrolase I, N-terminal domain 0.4362 188 244 1.10.286.10
1n3tC01 Mainly Alpha;Orthogonal Bundle;GTP Cyclohydrolase I; Chain A, domain 1;GTP cyclohydrolase I, N-terminal domain 0.4106 188 244 1.10.286.10
1fbxF01 Mainly Alpha;Orthogonal Bundle;GTP Cyclohydrolase I; Chain A, domain 1;GTP cyclohydrolase I, N-terminal domain 0.4041 188 252 1.10.286.10
ID Description Score Start End GO Terms
AF-A0A838JDN5-F1-model_v4 ATPase 0.9951 273 344
AF-A0A2M8P8N7-F1-model_v4 ATPase 0.9832 235 344
AF-A0A699XMA7-F1-model_v4 ATPase 0.9823 265 344
AF-A0A3S1Q4N3-F1-model_v4 ATPase 0.9773 220 343
AF-A0A645GBS1-F1-model_v4 Uncharacterized protein 0.9618 206 344

Feature Viewer

pLDDT pTM Quality
66.2 0.65 Medium
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Predicted Structure (AlphaFold2)

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