F204562

General Info

Members Datasets Scaffolds Average Seq Length
148 115 296 345

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2758568621|2760623648
Length 397
Sequence KDAVTRNGAVTRNGAADPTGAPSRTDTAERTEAPAPDDERKPDSPPKLHGRTWTYVLRNSVRQFSRDQCTDLAAALTYYAVLAAAPALLALVSVLGLVGNGGQAVERVIGTMDGVLPPDVLAVVEPLVQNAAGGGGKAGFALLLGVVLALWSASGYVGAFGRAMNRIYEIDEGRPVWKLRPVMLLVTLVAVVIAALIVAAVALSGPVAQAVGDAVGLGSTAVTVWSIAKWPVVLLLVVVLVAILYHVTPNVRQPRMRWLSVGAFVAILVWVLASAAFALYVATFSNYDATYGSLAGIIVFLLWLWITNLALLFGAELDAELERGRELQGGIAAEETVQLPPKDARASEKREAKHLKEVERGRELRLAAERDGANEDGANKDGANKDQRTDDRTNHRA

Samples

Sample ID Description Type Environment
1 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
12 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
13 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
14 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
15 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
16 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
24 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
26 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
33 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
34 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
35 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
36 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
37 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
38 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
39 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
40 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
41 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
42 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
43 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
44 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
45 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
46 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
47 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
48 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
49 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
50 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
51 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
52 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
53 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
54 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
55 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
56 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
57 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
58 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
59 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
60 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
65 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
66 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
77 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
78 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
79 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
80 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
81 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
82 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
86 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
87 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
88 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
89 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
90 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
91 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
92 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
93 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
94 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
95 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
96 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
97 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
98 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
99 2808606394 Promicromonospora sp. C35 Isolate Unclassified
100 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
101 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
102 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
103 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
104 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
105 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
106 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
107 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
108 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
109 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
110 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
111 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
112 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
113 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
114 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
115 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.11
Metatranscriptomes 0.68
Isolates 16.22

Biome Distribution

Category Percentage (%)
Aerial Root 2.03
Bulb 0
Endosphere 6.08
Nodule 0
Rhizoplane 14.86
Rhizosphere 59.46
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1003653 3300002738 Bacteria 3124
2 rootH1_10032645 3300003316 Bacteria 1530
3 Ga0070683_100097109 3300005329 Bacteria 2771
4 Ga0070683_100178650 3300005329 Bacteria 2015
5 Ga0070682_100072096 3300005337 Bacteria 2212
6 Ga0068868_100139690 3300005338 Bacteria 1988
7 Ga0070692_10013935 3300005345 Bacteria 3760
8 Ga0070678_100148809 3300005456 Bacteria 1883
9 Ga0070678_100173541 3300005456 Bacteria 1758
10 Ga0068853_100260250 3300005539 Bacteria 1595
11 Ga0068858_100044706 3300005842 Bacteria 4105
12 Ga0075365_10000494 3300006038 Bacteria 15016
13 Ga0075365_10139807 3300006038 Bacteria 1680
14 Ga0075365_10203595 3300006038 Bacteria 1387
15 Ga0075367_10036933 3300006178 Bacteria 2835
16 Ga0068865_100014322 3300006881 Bacteria 5038
17 Ga0105245_10001813 3300009098 Bacteria 19433
18 Ga0105245_10295973 3300009098 Bacteria 1586
19 Ga0105243_10066768 3300009148 Bacteria 2894
20 Ga0105248_10094833 3300009177 Bacteria 3360
21 Ga0105249_10091738 3300009553 Bacteria 2843
22 Ga0105239_10021004 3300010375 Bacteria 7205
23 Ga0105246_10002116 3300011119 Bacteria 11978
24 Ga0105246_10165520 3300011119 Bacteria 1688
25 Ga0157369_10067701 3300013105 Bacteria 3838
26 Ga0157369_10113616 3300013105 Bacteria 2877
27 Ga0157372_10164066 3300013307 Bacteria 2569
28 Ga0157375_10104378 3300013308 Bacteria 2923
29 Ga0157375_10132302 3300013308 Bacteria 2615
30 Ga0163163_10113973 3300014325 Bacteria 2734
31 Ga0157379_10128311 3300014968 Bacteria 2282
32 Ga0224712_10068457 3300022467 Bacteria 1435
33 Ga0209646_1000013 3300025246 Bacteria 565830
34 Ga0209646_1000014 3300025246 Bacteria 550484
35 Ga0209051_1000520 3300025303 Bacteria 48228
36 Ga0207688_10025092 3300025901 Bacteria 3271
37 Ga0207650_10151583 3300025925 Bacteria 1830
38 Ga0207687_10096277 3300025927 Bacteria 2169
39 Ga0207703_10037079 3300026035 Bacteria 3883
40 Ga0207674_10029646 3300026116 Bacteria 5759
41 Ga0307410_10043691 3300031852 Bacteria 2971
42 Ga0307406_10088512 3300031901 Bacteria 2078
43 Ga0307407_10012850 3300031903 Bacteria 4043
44 Ga0307412_10095232 3300031911 Bacteria 2093
45 Ga0307409_100032270 3300031995 Bacteria 3794
46 Ga0307409_100401995 3300031995 Bacteria 1309
47 Ga0307409_100445358 3300031995 Bacteria 1249
48 Ga0307415_100009002 3300032126 Bacteria 5568
49 Ga0436364_0327276 3300037853 Bacteria 4364
50 Ga0436365_0345272 3300039437 Bacteria 1486
51 Ga0436365_0358014 3300039437 Bacteria 1332
52 Ga0436365_0548246 3300039437 Bacteria 5093
53 Ga0451853_3867169 3300041512 Bacteria 5823
54 Ga0466970_0061094 3300044765 Bacteria 2018
55 Ga0466957_0235592 3300044842 Bacteria 1213
56 Ga0466960_0025900 3300044901 Bacteria 2659
57 Ga0466967_0001989 3300045976 Bacteria 12417
58 Ga0466967_0076608 3300045976 Bacteria 3009
59 Ga0495641_0065668 3300046461 Bacteria 1633
60 Ga0495639_0073697 3300046475 Bacteria 1581
61 Ga0495662_0031079 3300046476 Bacteria 2579
62 Ga0495608_0151201 3300046511 Bacteria 1479
63 Ga0495631_0067347 3300046518 Bacteria 1549
64 Ga0495621_0081124 3300046539 Bacteria 1210
65 Ga0495635_0094136 3300046663 Bacteria 2048
66 Ga0495646_0111679 3300046680 Bacteria 1555
67 Ga0495624_0045309 3300046690 Bacteria 2801
68 Ga0495604_0170534 3300047317 Bacteria 1531
69 Ga0495674_0099872 3300047319 Bacteria 2470
70 Ga0496102_0030745 3300048905 Bacteria 4808
71 Ga0496102_0086075 3300048905 Bacteria 2902
72 Ga0496103_0045283 3300048906 Bacteria 2715
73 Ga0496107_0049423 3300048910 Bacteria 3030
74 Ga0496108_0029902 3300048911 Bacteria 4515
75 Ga0496108_0043359 3300048911 Bacteria 3758
76 Ga0496108_0068540 3300048911 Bacteria 2993
77 Ga0496109_0069052 3300048912 Bacteria 3240
78 Ga0496109_0070922 3300048912 Bacteria 3198
79 Ga0496109_0204430 3300048912 Bacteria 1857
80 Ga0496109_0256821 3300048912 Bacteria 1646
81 Ga0496112_0117809 3300048915 Bacteria 2626
82 Ga0496112_0144236 3300048915 Bacteria 2350
83 Ga0496113_0126850 3300048916 Bacteria 1999
84 Ga0496114_0013221 3300048917 Bacteria 6617
85 Ga0496114_0020190 3300048917 Bacteria 5406
86 Ga0496114_0034967 3300048917 Bacteria 4149
87 Ga0496114_0039240 3300048917 Bacteria 3918
88 Ga0496114_0150139 3300048917 Bacteria 2021
89 Ga0496114_0281890 3300048917 Bacteria 1465
90 Ga0496115_0210562 3300048918 Bacteria 1606
91 Ga0496115_0210794 3300048918 Bacteria 1605
92 Ga0496123_0008754 3300048926 Bacteria 9238
93 Ga0501033_0020896 3300049570 Bacteria 4942
94 Ga0501033_0048556 3300049570 Bacteria 3152
95 Ga0501034_0145968 3300049571 Bacteria 2343
96 Ga0501036_0011312 3300049572 Bacteria 7383
97 Ga0501036_0064327 3300049572 Bacteria 3104
98 Ga0501037_0022225 3300049573 Bacteria 4693
99 Ga0501038_0031802 3300049574 Bacteria 4661
100 Ga0501038_0045067 3300049574 Bacteria 3829
101 Ga0501039_0009272 3300049575 Bacteria 7496
102 Ga0501043_0040759 3300049579 Bacteria 3650
103 Ga0501043_0277338 3300049579 Bacteria 1286
104 Ga0501046_0001938 3300049580 Bacteria 19639
105 Ga0501047_0022514 3300049581 Bacteria 6052
106 Ga0501048_0012510 3300049582 Bacteria 6315
107 Ga0501069_0035208 3300049585 Bacteria 2758
108 Ga0501069_0073401 3300049585 Bacteria 1919
109 Ga0501070_0078699 3300049586 Bacteria 2728
110 Ga0501071_0005033 3300049587 Bacteria 8452
111 Ga0501072_0017855 3300049588 Bacteria 5456
112 Ga0501074_0005775 3300049590 Bacteria 8924
113 Ga0501075_0021205 3300049591 Bacteria 4735
114 Ga0501079_0010811 3300049741 Bacteria 6951
115 Ga0501044_0062374 3300049823 Bacteria 3810
116 Ga0501044_0260410 3300049823 Bacteria 1673
117 Ga0501045_0010878 3300049824 Bacteria 6377
118 nmdc:mga00v17_234197_c1 3300050491 Bacteria 1190
119 nmdc:mga0yw44_39569_c1 3300050492 Bacteria 2797
120 nmdc:mga06z11_96226_c1 3300050494 Bacteria 1617
121 Ga0495595_0075502 3300053084 Bacteria 1599
122 Ga0495619_0116944 3300053085 Bacteria 1826
123 Ga0500573_0095776 3300053140 Bacteria 1673
124 Ga0501082_0013262 3300060353 Bacteria 7088
125 2760623648 2758568621 Bacteria 5967089
126 2643853217 2643221567 Bacteria 4163945
127 2644136163 2643221624 Bacteria 4384879
128 2644455858 2643221681 Bacteria 3707866
129 2644538215 2643221697 Bacteria 3575694
130 2739605306 2739367654 Bacteria 6049412
131 2760307833 2758568522 Bacteria 5953541
132 2809028529 2808606394 Bacteria 6248540
133 2819428073 2818991318 Bacteria 5266538
134 2835191275 2835188231 Bacteria 3476928
135 2839988802 2839986021 Bacteria 3685650
136 2868089852 2868088558 Bacteria 7609351
137 2884996034 2884994152 Bacteria 4492978
138 2895660277 2895660088 Bacteria 3782833
139 2902837922 2902837492 Bacteria 6697721
140 2929217579 2929212328 Bacteria 7708288
141 2932434789 2932431166 Bacteria 4215299
142 2935892614 2935890801 Bacteria 4593001
143 2974316952 2974315732 Bacteria 4602776
144 2984525139 2984523437 Bacteria 4508481
145 2984580182 2984576629 Bacteria 4248407
146 2990259032 2990256926 Bacteria 4252839
147 3001890586 3001889506 Bacteria 2975194
148 8056580978 8056579771 Bacteria 5840325
149 JGI25154J39366_1003653
150 rootH1_10032645
151 Ga0070683_100097109
152 Ga0070683_100178650
153 Ga0070682_100072096
154 Ga0068868_100139690
155 Ga0070692_10013935
156 Ga0070678_100148809
157 Ga0070678_100173541
158 Ga0068853_100260250
159 Ga0068858_100044706
160 Ga0075365_10000494
161 Ga0075365_10139807
162 Ga0075365_10203595
163 Ga0075367_10036933
164 Ga0068865_100014322
165 Ga0105245_10001813
166 Ga0105245_10295973
167 Ga0105243_10066768
168 Ga0105248_10094833
169 Ga0105249_10091738
170 Ga0105239_10021004
171 Ga0105246_10002116
172 Ga0105246_10165520
173 Ga0157369_10067701
174 Ga0157369_10113616
175 Ga0157372_10164066
176 Ga0157375_10104378
177 Ga0157375_10132302
178 Ga0163163_10113973
179 Ga0157379_10128311
180 Ga0224712_10068457
181 Ga0209646_1000013
182 Ga0209646_1000014
183 Ga0209051_1000520
184 Ga0207688_10025092
185 Ga0207650_10151583
186 Ga0207687_10096277
187 Ga0207703_10037079
188 Ga0207674_10029646
189 Ga0307410_10043691
190 Ga0307406_10088512
191 Ga0307407_10012850
192 Ga0307412_10095232
193 Ga0307409_100032270
194 Ga0307409_100401995
195 Ga0307409_100445358
196 Ga0307415_100009002
197 Ga0436364_0327276
198 Ga0436365_0345272
199 Ga0436365_0358014
200 Ga0436365_0548246
201 Ga0451853_3867169
202 Ga0466970_0061094
203 Ga0466957_0235592
204 Ga0466960_0025900
205 Ga0466967_0001989
206 Ga0466967_0076608
207 Ga0495641_0065668
208 Ga0495639_0073697
209 Ga0495662_0031079
210 Ga0495608_0151201
211 Ga0495631_0067347
212 Ga0495621_0081124
213 Ga0495635_0094136
214 Ga0495646_0111679
215 Ga0495624_0045309
216 Ga0495604_0170534
217 Ga0495674_0099872
218 Ga0496102_0030745
219 Ga0496102_0086075
220 Ga0496103_0045283
221 Ga0496107_0049423
222 Ga0496108_0029902
223 Ga0496108_0043359
224 Ga0496108_0068540
225 Ga0496109_0069052
226 Ga0496109_0070922
227 Ga0496109_0204430
228 Ga0496109_0256821
229 Ga0496112_0117809
230 Ga0496112_0144236
231 Ga0496113_0126850
232 Ga0496114_0013221
233 Ga0496114_0020190
234 Ga0496114_0034967
235 Ga0496114_0039240
236 Ga0496114_0150139
237 Ga0496114_0281890
238 Ga0496115_0210562
239 Ga0496115_0210794
240 Ga0496123_0008754
241 Ga0501033_0020896
242 Ga0501033_0048556
243 Ga0501034_0145968
244 Ga0501036_0011312
245 Ga0501036_0064327
246 Ga0501037_0022225
247 Ga0501038_0031802
248 Ga0501038_0045067
249 Ga0501039_0009272
250 Ga0501043_0040759
251 Ga0501043_0277338
252 Ga0501046_0001938
253 Ga0501047_0022514
254 Ga0501048_0012510
255 Ga0501069_0035208
256 Ga0501069_0073401
257 Ga0501070_0078699
258 Ga0501071_0005033
259 Ga0501072_0017855
260 Ga0501074_0005775
261 Ga0501075_0021205
262 Ga0501079_0010811
263 Ga0501044_0062374
264 Ga0501044_0260410
265 Ga0501045_0010878
266 nmdc:mga00v17_234197_c1
267 nmdc:mga0yw44_39569_c1
268 nmdc:mga06z11_96226_c1
269 Ga0495595_0075502
270 Ga0495619_0116944
271 Ga0500573_0095776
272 Ga0501082_0013262
273 2760623648
274 2643853217
275 2644136163
276 2644455858
277 2644538215
278 2739605306
279 2760307833
280 2809028529
281 2819428073
282 2835191275
283 2839988802
284 2868089852
285 2884996034
286 2895660277
287 2902837922
288 2929217579
289 2932434789
290 2935892614
291 2974316952
292 2984525139
293 2984580182
294 2990259032
295 3001890586
296 8056580978

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03631

Virul_fac_BrkB

Virulence factor BrkB

65

325

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rqe-assembly1.cif.gz_A cerebral cavernous malformation 3 (ccm3) in complex with paxillin ld1 0.3296 84 279
3rqe-assembly1.cif.gz_A cerebral cavernous malformation 3 (ccm3) in complex with paxillin ld1 0.3116 84 279
8anq-assembly1.cif.gz_A crystal structure of the microbial rhodopsin from sphingomonas paucimobilis (spar) 0.3074 64 283
8jd4-assembly1.cif.gz_4 cryo-em structure of g protein-free mglu2-mglu4 heterodimer in acc state 0.304 41 282
8anq-assembly1.cif.gz_A crystal structure of the microbial rhodopsin from sphingomonas paucimobilis (spar) 0.2989 64 283
ID Description Score Start End Superfamily
3rqfA02 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Nucleotidyltransferases 0.3904 133 279 1.20.120.330
af_I1JZK1_1_317_1.25.10.10 Mainly Alpha;Alpha Horseshoe;Leucine-rich Repeat Variant;Leucine-rich Repeat Variant 0.3887 1 145 1.25.10.10
3rqfA02 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Nucleotidyltransferases 0.3764 133 279 1.20.120.330
af_Q8IIU4_1_132_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.3152 134 288 1.20.140.150
af_O45500_219_448_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.3129 34 277 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A847KEI9-F1-model_v4 YihY/virulence factor BrkB family protein 0.851 25 332 GO:0005886
AF-A0A7W1RTB0-F1-model_v4 YihY/virulence factor BrkB family protein 0.8475 22 308 GO:0005886
AF-A0A3D4WPF1-F1-model_v4 YihY/virulence factor BrkB family protein 0.8464 20 309 GO:0005886
AF-A0A0B2AQI0-F1-model_v4 Ribonuclease BN 0.8381 13 337 GO:0005886
AF-A0A5B7WR57-F1-model_v4 Membrane protein 0.8295 11 335 GO:0005886

Map