F204300

General Info

Members Datasets Scaffolds Average Seq Length
148 127 296 228

Family's Representative Sequence

Representative Sequence 3300048928|Ga0496125_0005294|Ga0496125_0005294_1029_1805
Length 258
Sequence MIVIELLMLFPFRLRLERRSNDILERRSRYVKMVRMATRNQRTERRTDALSKERIVEAAIEILDDEGEAALTFRALSARLATGSGAIYWHVANKSELLAAATDDVIARVTTGATEGAAPREAIRTITLGVFDAIDAHPWVGTQLSREPWQSAVMQIFESLGEQLQALGVPESAQFDCASALLNYVLGLAGQYAAGARLLPRETDRSAFLAGVATRWEELDSAKYPFLNQVTAQLRDHDDREQFLAGIELILAGIDTVR

Samples

Sample ID Description Type Environment
1 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
5 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
6 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
7 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
8 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
9 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
10 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
11 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
12 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
13 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
14 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
15 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
16 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
17 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
18 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
19 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
20 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
21 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
23 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
30 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
31 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
32 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
33 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
34 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
35 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
36 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
37 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
38 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
39 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
40 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
41 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
42 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
43 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
44 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
45 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
46 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
47 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
48 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
49 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
50 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
51 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
52 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
53 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
54 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
55 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
56 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
57 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
58 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
59 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
60 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
61 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
62 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
63 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
64 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
65 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
66 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
67 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
68 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
80 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
81 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
82 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
86 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
87 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
88 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
89 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
90 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
91 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
92 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
93 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
94 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
95 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
96 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
97 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
98 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
99 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
100 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
101 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
102 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
103 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
104 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
105 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
106 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere
107 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
108 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
109 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
110 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
111 2511231028 Bradyrhizobium sp. YR681 Isolate Rhizosphere
112 2547132424 Nocardia nova SH22a Isolate Unclassified
113 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
114 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
115 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
116 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
117 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
118 2856287931 Paraburkholderia bannensis BE22 Isolate Rhizosphere
119 2857357740 Paraburkholderia tropica BE15 Isolate Rhizosphere
120 2874628541 Bradyrhizobium betae Opo-243 Isolate Unclassified
121 2888388044 Bradyrhizobium cosmicum 58S1 Isolate Unclassified
122 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
123 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
124 2922554459 Rhodococcus sp. 66b Isolate Unclassified
125 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
126 2932401849 Devosia sp. 2618 Isolate Rhizosphere
127 8002784119 Frankia sp. AgB1.9 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.81
Metatranscriptomes 0.68
Isolates 13.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.59
Nodule 1.35
Rhizoplane 1.35
Rhizosphere 63.51
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496125_0005294 3300048928 Bacteria 14429
2 JGI25153J46596_10008421 3300003215 Bacteria 4930
3 Ga0068868_100407620 3300005338 Bacteria 1174
4 Ga0070686_100039964 3300005544 Bacteria 2925
5 Ga0070665_100418390 3300005548 Bacteria 1349
6 Ga0070702_100652293 3300005615 Bacteria 796
7 Ga0068861_100056662 3300005719 Bacteria 2992
8 Ga0068863_100205092 3300005841 Bacteria 1897
9 Ga0068860_100340032 3300005843 Bacteria 1476
10 Ga0068862_100473792 3300005844 Bacteria 1184
11 Ga0075366_10096884 3300006195 Bacteria 1769
12 Ga0075370_10014883 3300006353 Bacteria 4156
13 Ga0068865_100408181 3300006881 Bacteria 1114
14 Ga0105248_11114578 3300009177 Bacteria 892
15 Ga0105237_10240380 3300009545 Bacteria 1812
16 Ga0157378_10426086 3300013297 Bacteria 1312
17 Ga0157375_10483015 3300013308 Bacteria 1404
18 Ga0157380_10850891 3300014326 Bacteria 934
19 Ga0163161_10210605 3300017792 Bacteria 1501
20 Ga0213875_10000479 3300021388 Bacteria 34018
21 Ga0209563_105080 3300025230 Bacteria 2429
22 Ga0209758_1033576 3300025297 Bacteria 2057
23 Ga0207671_10161851 3300025914 Bacteria 1733
24 Ga0207669_10532561 3300025937 Bacteria 945
25 Ga0207704_10164590 3300025938 Bacteria 1583
26 Ga0207703_10835786 3300026035 Bacteria 880
27 Ga0207675_100099116 3300026118 Bacteria 2745
28 Ga0207675_100168750 3300026118 Bacteria 2091
29 Ga0268266_10090209 3300028379 Bacteria 2686
30 Ga0265770_1008391 3300030878 Bacteria 1472
31 Ga0307508_10007033 3300031616 Bacteria 10493
32 Ga0307415_100016960 3300032126 Bacteria 4356
33 Ga0307415_100357431 3300032126 Bacteria 1232
34 Ga0307510_10026808 3300033180 Bacteria 6614
35 Ga0316214_1003438 3300033545 Bacteria 1997
36 Ga0373940_0133249 3300035088 Bacteria 780
37 Ga0373936_0072083 3300035113 Bacteria 1425
38 Ga0373941_0030892 3300035115 Bacteria 1592
39 Ga0373942_0002564 3300035207 Bacteria 4387
40 Ga0373933_0002245 3300035724 Bacteria 11023
41 Ga0373937_0142289 3300036401 Bacteria 2244
42 Ga0436364_1299779 3300037853 Bacteria 159755
43 Ga0466969_0002001 3300044656 Bacteria 10877
44 Ga0466972_0002818 3300044658 Bacteria 8615
45 Ga0466966_0001590 3300044684 Bacteria 14591
46 Ga0466971_0152924 3300044719 Bacteria 1078
47 Ga0466970_0101841 3300044765 Bacteria 1564
48 Ga0466970_0121530 3300044765 Bacteria 1430
49 Ga0466957_0146308 3300044842 Bacteria 1525
50 Ga0466959_0081514 3300045049 Bacteria 2331
51 Ga0466967_0002949 3300045976 Bacteria 10870
52 Ga0466967_0931640 3300045976 Bacteria 864
53 Ga0495638_0012614 3300046460 Bacteria 5783
54 Ga0495653_0178167 3300046463 Bacteria 1461
55 Ga0495585_0015224 3300046492 Bacteria 4470
56 Ga0495648_0131051 3300046524 Bacteria 1333
57 Ga0495667_0156491 3300046559 Bacteria 1466
58 Ga0495668_0000128 3300046616 Bacteria 113090
59 Ga0495634_0284149 3300046642 Bacteria 1004
60 Ga0495635_0097726 3300046663 Bacteria 2007
61 Ga0495661_0224311 3300046665 Bacteria 972
62 Ga0495649_0132901 3300046694 Bacteria 1313
63 Ga0495674_0001552 3300047319 Bacteria 22475
64 Ga0495680_0004595 3300047322 Bacteria 13161
65 Ga0495679_009513 3300047446 Bacteria 3887
66 Ga0495686_0050497 3300047472 Bacteria 2613
67 Ga0496102_0226120 3300048905 Bacteria 1764
68 Ga0496108_0000088 3300048911 Bacteria 97568
69 Ga0496118_0022068 3300048921 Bacteria 5581
70 Ga0496118_0101352 3300048921 Bacteria 1945
71 Ga0496121_0007495 3300048924 Bacteria 13174
72 Ga0496121_0257423 3300048924 Bacteria 1207
73 Ga0496126_0265441 3300048929 Bacteria 1426
74 Ga0501031_0034043 3300049568 Bacteria 3324
75 Ga0501032_0009355 3300049569 Bacteria 7099
76 Ga0501032_0051888 3300049569 Bacteria 2764
77 Ga0501034_0023850 3300049571 Bacteria 6230
78 Ga0501034_0061900 3300049571 Bacteria 3758
79 Ga0501034_0252773 3300049571 Bacteria 1707
80 Ga0501036_0005980 3300049572 Bacteria 9866
81 Ga0501036_0174510 3300049572 Bacteria 1810
82 Ga0501036_0205137 3300049572 Bacteria 1657
83 Ga0501037_0142341 3300049573 Bacteria 1716
84 Ga0501038_0012701 3300049574 Bacteria 7697
85 Ga0501039_0011485 3300049575 Bacteria 6741
86 Ga0501042_0244141 3300049578 Bacteria 1296
87 Ga0501043_0049731 3300049579 Bacteria 3296
88 Ga0501043_0112331 3300049579 Bacteria 2139
89 Ga0501046_0185072 3300049580 Bacteria 1556
90 Ga0501047_0005331 3300049581 Bacteria 12086
91 Ga0501047_0007714 3300049581 Bacteria 10134
92 Ga0501047_0079603 3300049581 Bacteria 3150
93 Ga0501067_0203528 3300049583 Bacteria 1102
94 Ga0501070_0014854 3300049586 Bacteria 6551
95 Ga0501070_0165273 3300049586 Bacteria 1824
96 Ga0501080_0132126 3300049742 Bacteria 2311
97 Ga0501080_0350638 3300049742 Bacteria 1333
98 Ga0501035_0008566 3300049822 Bacteria 9520
99 Ga0501035_0092775 3300049822 Bacteria 2656
100 Ga0501044_0131783 3300049823 Bacteria 2493
101 Ga0501045_0106481 3300049824 Bacteria 2078
102 Ga0501045_0336320 3300049824 Bacteria 1124
103 nmdc:mga00v17_410074_c1 3300050491 Bacteria 880
104 nmdc:mga0k408_98429_c1 3300050493 Bacteria 1723
105 nmdc:mga06z11_216380_c1 3300050494 Bacteria 1118
106 nmdc:mga07m45_17973_c1 3300050496 Bacteria 3807
107 Ga0495601_0038904 3300053077 Bacteria 2976
108 Ga0500643_000032 3300053087 Bacteria 200350
109 Ga0500566_0000246 3300053094 Bacteria 28960
110 Ga0500556_0004482 3300053104 Bacteria 3972
111 Ga0500562_118296 3300053108 Bacteria 722
112 Ga0500618_000291 3300053125 Bacteria 38132
113 Ga0500618_000341 3300053125 Bacteria 33449
114 Ga0500618_002120 3300053125 Bacteria 7842
115 Ga0500655_017183 3300053133 Bacteria 1337
116 Ga0500559_0074295 3300053136 Bacteria 1536
117 Ga0500568_0004657 3300053139 Bacteria 7293
118 Ga0500577_0016034 3300053142 Bacteria 2354
119 Ga0500603_006766 3300053150 Bacteria 2500
120 Ga0500616_0119396 3300053153 Bacteria 1262
121 Ga0500622_0013921 3300053156 Bacteria 4328
122 Ga0500627_0012989 3300053158 Bacteria 3141
123 Ga0500634_0084606 3300053161 Bacteria 1625
124 Ga0500636_0017450 3300053177 Bacteria 4241
125 Ga0500636_0019121 3300053177 Bacteria 4054
126 Ga0500645_051618 3300053730 Bacteria 1199
127 Ga0500601_000289 3300053737 Bacteria 9554
128 Ga0466962_0037218 3300061719 Bacteria 2330
129 2501085993 2501025502 Bacteria 9641094
130 2509150467 2508501128 Bacteria 8613869
131 2511091560 2510917013 Bacteria 9951648
132 2511399865 2511231028 Bacteria 8046582
133 2548699685 2547132424 Bacteria 8348532
134 2566992071 2565956761 Bacteria 6601618
135 2585149804 2582581279 Bacteria 4980720
136 2644192092 2643221634 Bacteria 6705461
137 2738890076 2738541308 Bacteria 7020677
138 2739205025 2738543005 Bacteria 5278128
139 2856290093 2856287931 Bacteria 7223934
140 2857362866 2857357740 Bacteria 9937880
141 2874632068 2874628541 Bacteria 8630250
142 2888393606 2888388044 Bacteria 7304136
143 2895427563 2895427314 Bacteria 13147766
144 2904538526 2904535858 Bacteria 6308016
145 2922559257 2922554459 Bacteria 6683962
146 2929216015 2929212328 Bacteria 7708288
147 2932401965 2932401849 Bacteria 4262978
148 8002785430 8002784119 Bacteria 9788632
149 Ga0496125_0005294
150 JGI25153J46596_10008421
151 Ga0068868_100407620
152 Ga0070686_100039964
153 Ga0070665_100418390
154 Ga0070702_100652293
155 Ga0068861_100056662
156 Ga0068863_100205092
157 Ga0068860_100340032
158 Ga0068862_100473792
159 Ga0075366_10096884
160 Ga0075370_10014883
161 Ga0068865_100408181
162 Ga0105248_11114578
163 Ga0105237_10240380
164 Ga0157378_10426086
165 Ga0157375_10483015
166 Ga0157380_10850891
167 Ga0163161_10210605
168 Ga0213875_10000479
169 Ga0209563_105080
170 Ga0209758_1033576
171 Ga0207671_10161851
172 Ga0207669_10532561
173 Ga0207704_10164590
174 Ga0207703_10835786
175 Ga0207675_100099116
176 Ga0207675_100168750
177 Ga0268266_10090209
178 Ga0265770_1008391
179 Ga0307508_10007033
180 Ga0307415_100016960
181 Ga0307415_100357431
182 Ga0307510_10026808
183 Ga0316214_1003438
184 Ga0373940_0133249
185 Ga0373936_0072083
186 Ga0373941_0030892
187 Ga0373942_0002564
188 Ga0373933_0002245
189 Ga0373937_0142289
190 Ga0436364_1299779
191 Ga0466969_0002001
192 Ga0466972_0002818
193 Ga0466966_0001590
194 Ga0466971_0152924
195 Ga0466970_0101841
196 Ga0466970_0121530
197 Ga0466957_0146308
198 Ga0466959_0081514
199 Ga0466967_0002949
200 Ga0466967_0931640
201 Ga0495638_0012614
202 Ga0495653_0178167
203 Ga0495585_0015224
204 Ga0495648_0131051
205 Ga0495667_0156491
206 Ga0495668_0000128
207 Ga0495634_0284149
208 Ga0495635_0097726
209 Ga0495661_0224311
210 Ga0495649_0132901
211 Ga0495674_0001552
212 Ga0495680_0004595
213 Ga0495679_009513
214 Ga0495686_0050497
215 Ga0496102_0226120
216 Ga0496108_0000088
217 Ga0496118_0022068
218 Ga0496118_0101352
219 Ga0496121_0007495
220 Ga0496121_0257423
221 Ga0496126_0265441
222 Ga0501031_0034043
223 Ga0501032_0009355
224 Ga0501032_0051888
225 Ga0501034_0023850
226 Ga0501034_0061900
227 Ga0501034_0252773
228 Ga0501036_0005980
229 Ga0501036_0174510
230 Ga0501036_0205137
231 Ga0501037_0142341
232 Ga0501038_0012701
233 Ga0501039_0011485
234 Ga0501042_0244141
235 Ga0501043_0049731
236 Ga0501043_0112331
237 Ga0501046_0185072
238 Ga0501047_0005331
239 Ga0501047_0007714
240 Ga0501047_0079603
241 Ga0501067_0203528
242 Ga0501070_0014854
243 Ga0501070_0165273
244 Ga0501080_0132126
245 Ga0501080_0350638
246 Ga0501035_0008566
247 Ga0501035_0092775
248 Ga0501044_0131783
249 Ga0501045_0106481
250 Ga0501045_0336320
251 nmdc:mga00v17_410074_c1
252 nmdc:mga0k408_98429_c1
253 nmdc:mga06z11_216380_c1
254 nmdc:mga07m45_17973_c1
255 Ga0495601_0038904
256 Ga0500643_000032
257 Ga0500566_0000246
258 Ga0500556_0004482
259 Ga0500562_118296
260 Ga0500618_000291
261 Ga0500618_000341
262 Ga0500618_002120
263 Ga0500655_017183
264 Ga0500559_0074295
265 Ga0500568_0004657
266 Ga0500577_0016034
267 Ga0500603_006766
268 Ga0500616_0119396
269 Ga0500622_0013921
270 Ga0500627_0012989
271 Ga0500634_0084606
272 Ga0500636_0017450
273 Ga0500636_0019121
274 Ga0500645_051618
275 Ga0500601_000289
276 Ga0466962_0037218
277 2501085993
278 2509150467
279 2511091560
280 2511399865
281 2548699685
282 2566992071
283 2585149804
284 2644192092
285 2738890076
286 2739205025
287 2856290093
288 2857362866
289 2874632068
290 2888393606
291 2895427563
292 2904538526
293 2922559257
294 2929216015
295 2932401965
296 8002785430

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

55

101

0.98

PF02909

TetR_C_1

Tetracyclin repressor-like, C-terminal domain

114

258

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hxo-assembly1.cif.gz_B structure of the transcriptional regulator sco7222, a tetr from streptomyces coelicolor 0.9283 15 222
2hxo-assembly1.cif.gz_B structure of the transcriptional regulator sco7222, a tetr from streptomyces coelicolor 0.9111 15 222
2hxo-assembly1.cif.gz_A structure of the transcriptional regulator sco7222, a tetr from streptomyces coelicolor 0.9094 15 223
2hxo-assembly1.cif.gz_A structure of the transcriptional regulator sco7222, a tetr from streptomyces coelicolor 0.8967 15 223
6rxb-assembly2.cif.gz_D crystal structure of tetr-q116a from acinetobacter baumannii aye in complex with minocycline 0.8244 15 223
ID Description Score Start End Superfamily
2y30B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9789 17 70 1.10.10.60
2y2zA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.977 15 70 1.10.10.60
5ojxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9758 14 70 1.10.10.60
2y31B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9713 15 70 1.10.10.60
2hxoA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9605 15 76 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A5Q0HEB2-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9782 15 223 GO:0000976
GO:0003700
GO:0045892
AF-A0A840AT15-F1-model_v4 AcrR family transcriptional regulator 0.9714 11 223 GO:0000976
GO:0003700
AF-A0A5Q0HEB2-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9691 15 223 GO:0000976
GO:0003700
GO:0045892
AF-U2RYD2-F1-model_v4 Transcriptional regulator, TetR family 0.9657 22 223 GO:0000976
GO:0003700
GO:0045892
AF-A0A5N0UXC5-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9646 63 223 GO:0045892

Map