F203116

General Info

Members Datasets Scaffolds Average Seq Length
148 130 296 364

Family's Representative Sequence

Representative Sequence 3300009553|Ga0105249_10121119|Ga0105249_101211192
Length 404
Sequence MRPAAATGHDVDNRDLSSKAVKGRDLNLLYTDVEDSLRASVRDLLTARCTPARVIATYDGDHDLAPELWRSLSVDLGLAGLLVPQDRGGAGATAREAAVVLEELGRFVAPVPFLTSAVVATTALLYAHDGGGDGTLGRLAAGGCAAALVVPFSASATSFRATVRADEDGTLRGRVTSVAGAVGADLLVVPVATDAGVELRTVDVHRAAPAGAEVGIQPVISLDMTRQLADIDFTGALSTQVTAAESGDAVVRDALDLGAALLASEQLGVAQWCLDQTVAYLRKRRQFGRPVGGFQAVKHRLADLYVLVESARAAARYAAVTAAEDDPDRGVAASIAQAYCSEVAVKAAEECVQLHGGIGMTWEHPAHLYLKRAKADQLAFGTAGAHRQRLGDLVDLRGADARTC

Samples

Sample ID Description Type Environment
1 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
17 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
18 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
19 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
20 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009986 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
31 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
32 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
34 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
35 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
36 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
51 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
52 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
53 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
54 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
55 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
58 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
59 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
60 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
61 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
64 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
65 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
66 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
67 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
68 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
69 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
70 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
71 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
72 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
73 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
74 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
75 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
76 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
77 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
78 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
79 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
80 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
81 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
93 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
94 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
95 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
96 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
97 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
98 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
99 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
100 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
101 2582580736 Prauserella sp. Am3 Isolate Unclassified
102 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
103 2643221692 Nocardia sp. Root136 Isolate Unclassified
104 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
105 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
106 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
107 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
108 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
109 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
110 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
111 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
112 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
113 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
114 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
115 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
116 2867475112 Streptomyces sp. TM32 Isolate Unclassified
117 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
118 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
119 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
120 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
121 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
122 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
123 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
124 2922554459 Rhodococcus sp. 66b Isolate Unclassified
125 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
126 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
127 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
128 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
129 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
130 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.38
Metatranscriptomes 0.68
Isolates 20.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.38
Nodule 0
Rhizoplane 0
Rhizosphere 72.97
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105249_10121119 3300009553 Bacteria 2486
2 JGI25406J46586_10012384 3300003203 Bacteria 3704
3 rootH1_10138739 3300003323 Bacteria 1693
4 Ga0070668_100002448 3300005347 Bacteria 13668
5 Ga0070667_100111362 3300005367 Bacteria 2374
6 Ga0070709_10000692 3300005434 Bacteria 19142
7 Ga0070714_100000771 3300005435 Bacteria 22690
8 Ga0070714_100006173 3300005435 Bacteria 9215
9 Ga0070714_100092912 3300005435 Bacteria 2645
10 Ga0070713_100002357 3300005436 Bacteria 12319
11 Ga0070710_10006620 3300005437 Bacteria 5571
12 Ga0070705_100059438 3300005440 Bacteria 2263
13 Ga0070663_100002565 3300005455 Bacteria 10265
14 Ga0070702_100017661 3300005615 Bacteria 3685
15 Ga0068860_100034752 3300005843 Bacteria 4836
16 Ga0081455_10000123 3300005937 Bacteria 89254
17 Ga0081539_10000254 3300005985 Bacteria 123532
18 Ga0075368_10006261 3300006042 Bacteria 4148
19 Ga0070715_10006588 3300006163 Bacteria 3957
20 Ga0070716_100000558 3300006173 Bacteria 15602
21 Ga0070712_100009541 3300006175 Bacteria 6120
22 Ga0075430_100001524 3300006846 Bacteria 18905
23 Ga0075431_100248223 3300006847 Bacteria 1809
24 Ga0105244_10038540 3300009036 Bacteria 2492
25 Ga0105243_10046401 3300009148 Bacteria 3418
26 Ga0105242_10038722 3300009176 Bacteria 3835
27 Ga0105237_10360681 3300009545 Bacteria 1458
28 Ga0105238_10256286 3300009551 Bacteria 1728
29 Ga0105033_103004 3300009986 Bacteria 1408
30 Ga0157375_10056033 3300013308 Bacteria 3889
31 Ga0163163_10215462 3300014325 Bacteria 1969
32 Ga0183367_1003 3300015688 Bacteria 814276
33 Ga0163161_10074437 3300017792 Bacteria 2490
34 Ga0206353_11543075 3300020082 Bacteria 8212
35 Ga0213876_10004370 3300021384 Bacteria 7915
36 Ga0213875_10009614 3300021388 Bacteria 4888
37 Ga0207426_1003389 3300025302 Bacteria 8734
38 Ga0207692_10000307 3300025898 Bacteria 16927
39 Ga0207699_10000349 3300025906 Bacteria 24578
40 Ga0207671_10234848 3300025914 Bacteria 1439
41 Ga0207693_10004496 3300025915 Bacteria 11797
42 Ga0207663_10001100 3300025916 Bacteria 12435
43 Ga0207649_10097145 3300025920 Bacteria 1942
44 Ga0207700_10011715 3300025928 Bacteria 5609
45 Ga0207664_10000863 3300025929 Bacteria 20523
46 Ga0207664_10012023 3300025929 Bacteria 6180
47 Ga0207664_10328171 3300025929 Bacteria 1351
48 Ga0207665_10000258 3300025939 Bacteria 36742
49 Ga0207712_10032093 3300025961 Bacteria 3543
50 Ga0207658_10013973 3300025986 Bacteria 5495
51 Ga0207678_10000205 3300026067 Bacteria 52265
52 Ga0207674_10032802 3300026116 Bacteria 5444
53 Ga0307515_10023361 3300028794 Bacteria 10839
54 Ga0307511_10067592 3300030521 Bacteria 2650
55 Ga0307512_10039545 3300030522 Bacteria 3950
56 Ga0307513_10002644 3300031456 Bacteria 24695
57 Ga0307508_10083873 3300031616 Bacteria 2769
58 Ga0307413_10000251 3300031824 Bacteria 16164
59 Ga0307518_10008492 3300031838 Bacteria 7337
60 Ga0307406_10308302 3300031901 Bacteria 1219
61 Ga0307409_100038255 3300031995 Bacteria 3547
62 Ga0307507_10010566 3300033179 Bacteria 11898
63 Ga0307510_10050617 3300033180 Bacteria 4403
64 Ga0395899_0017552 3300037312 Bacteria 5452
65 Ga0436364_1380397 3300037853 Bacteria 9153
66 Ga0436365_1378611 3300039437 Bacteria 178407
67 Ga0439442_012607 3300042002 Bacteria 1728
68 Ga0439449_0036325 3300042007 Bacteria 1833
69 Ga0466972_0008783 3300044658 Bacteria 5068
70 Ga0466972_0134108 3300044658 Bacteria 1166
71 Ga0466966_0007641 3300044684 Bacteria 7164
72 Ga0466961_0047251 3300044693 Bacteria 2752
73 Ga0466963_0015356 3300044694 Bacteria 4740
74 Ga0466968_0005381 3300044735 Bacteria 4791
75 Ga0466967_0002832 3300045976 Bacteria 11001
76 Ga0466967_0403654 3300045976 Bacteria 1330
77 Ga0495592_0039359 3300046454 Bacteria 3552
78 Ga0495608_0060405 3300046511 Bacteria 2494
79 Ga0495618_0149182 3300046514 Bacteria 1494
80 Ga0495628_0030524 3300046516 Bacteria 4363
81 Ga0495640_0046547 3300046533 Bacteria 3005
82 Ga0495667_0060421 3300046559 Bacteria 2486
83 Ga0495668_0000161 3300046616 Bacteria 101410
84 Ga0495635_0174370 3300046663 Bacteria 1462
85 Ga0495623_0165788 3300046679 Bacteria 1294
86 Ga0495684_0212612 3300047471 Bacteria 1421
87 Ga0501032_0027199 3300049569 Bacteria 3932
88 Ga0501032_0066468 3300049569 Bacteria 2409
89 Ga0501032_0113250 3300049569 Bacteria 1794
90 Ga0501033_0005968 3300049570 Bacteria 9560
91 Ga0501033_0010874 3300049570 Bacteria 6978
92 Ga0501034_0024075 3300049571 Bacteria 6195
93 Ga0501036_0077363 3300049572 Bacteria 2815
94 Ga0501038_0028801 3300049574 Bacteria 4930
95 Ga0501038_0273158 3300049574 Bacteria 1332
96 Ga0501043_0002579 3300049579 Bacteria 15324
97 Ga0501043_0039015 3300049579 Bacteria 3733
98 Ga0501043_0121626 3300049579 Bacteria 2047
99 Ga0501046_0000203 3300049580 Bacteria 61563
100 Ga0501047_0008313 3300049581 Bacteria 9794
101 Ga0501047_0290454 3300049581 Bacteria 1479
102 Ga0501070_0076164 3300049586 Bacteria 2777
103 Ga0501035_0002681 3300049822 Bacteria 17327
104 Ga0501035_0019605 3300049822 Bacteria 6214
105 Ga0501035_0090026 3300049822 Bacteria 2701
106 Ga0501044_0000470 3300049823 Bacteria 49055
107 Ga0501044_0012354 3300049823 Bacteria 9242
108 Ga0501044_0137222 3300049823 Bacteria 2436
109 Ga0501044_0172680 3300049823 Bacteria 2132
110 Ga0501045_0037155 3300049824 Bacteria 3540
111 nmdc:mga03n38_34784_c1 3300050490 Bacteria 2154
112 nmdc:mga04h51_3907_c1 3300050495 Bacteria 3665
113 nmdc:mga0qj67_223_c1 3300050509 Bacteria 38690
114 nmdc:mga06r32_190916_c1 3300050510 Bacteria 2036
115 Ga0495595_0094666 3300053084 Bacteria 1436
116 Ga0495619_0005893 3300053085 Bacteria 7766
117 Ga0500644_0009644 3300053088 Bacteria 2590
118 2566993941 2565956761 Bacteria 6601618
119 2583151233 2582580736 Bacteria 5325865
120 2586062170 2585427649 Bacteria 9053857
121 2644515695 2643221692 Bacteria 7282860
122 2676479386 2675903059 Bacteria 8644972
123 2738889151 2738541308 Bacteria 7020677
124 2774394555 2773857762 Bacteria 5971770
125 2776371355 2775506925 Bacteria 7237746
126 2791909858 2791354901 Bacteria 8322202
127 2795796816 2795385472 Bacteria 6627535
128 2809194589 2808606439 Bacteria 5952208
129 2809588676 2808606522 Bacteria 9488490
130 2812349338 2811994878 Bacteria 5992952
131 2863072127 2863067949 Bacteria 8541735
132 2866557279 2866552031 Bacteria 5824618
133 2866614635 2866612099 Bacteria 7543886
134 2867476867 2867475112 Bacteria 6909112
135 2891396819 2891395885 Bacteria 9251614
136 2891559437 2891554331 Bacteria 8812224
137 2891972958 2891968417 Bacteria 5821697
138 2899368243 2899359706 Bacteria 10940472
139 2904536989 2904535858 Bacteria 6308016
140 2915773867 2915768154 Bacteria 8424322
141 2917740804 2917736166 Bacteria 9690793
142 2922559610 2922554459 Bacteria 6683962
143 2997455408 2997451912 Bacteria 8492419
144 3006327946 3006321560 Bacteria 8247479
145 3006399364 3006393351 Bacteria 6615579
146 8003319419 8003314358 Bacteria 10575343
147 8054163231 8054160619 Bacteria 7783213
148 8056210699 8056207758 Bacteria 8639239
149 Ga0105249_10121119
150 JGI25406J46586_10012384
151 rootH1_10138739
152 Ga0070668_100002448
153 Ga0070667_100111362
154 Ga0070709_10000692
155 Ga0070714_100000771
156 Ga0070714_100006173
157 Ga0070714_100092912
158 Ga0070713_100002357
159 Ga0070710_10006620
160 Ga0070705_100059438
161 Ga0070663_100002565
162 Ga0070702_100017661
163 Ga0068860_100034752
164 Ga0081455_10000123
165 Ga0081539_10000254
166 Ga0075368_10006261
167 Ga0070715_10006588
168 Ga0070716_100000558
169 Ga0070712_100009541
170 Ga0075430_100001524
171 Ga0075431_100248223
172 Ga0105244_10038540
173 Ga0105243_10046401
174 Ga0105242_10038722
175 Ga0105237_10360681
176 Ga0105238_10256286
177 Ga0105033_103004
178 Ga0157375_10056033
179 Ga0163163_10215462
180 Ga0183367_1003
181 Ga0163161_10074437
182 Ga0206353_11543075
183 Ga0213876_10004370
184 Ga0213875_10009614
185 Ga0207426_1003389
186 Ga0207692_10000307
187 Ga0207699_10000349
188 Ga0207671_10234848
189 Ga0207693_10004496
190 Ga0207663_10001100
191 Ga0207649_10097145
192 Ga0207700_10011715
193 Ga0207664_10000863
194 Ga0207664_10012023
195 Ga0207664_10328171
196 Ga0207665_10000258
197 Ga0207712_10032093
198 Ga0207658_10013973
199 Ga0207678_10000205
200 Ga0207674_10032802
201 Ga0307515_10023361
202 Ga0307511_10067592
203 Ga0307512_10039545
204 Ga0307513_10002644
205 Ga0307508_10083873
206 Ga0307413_10000251
207 Ga0307518_10008492
208 Ga0307406_10308302
209 Ga0307409_100038255
210 Ga0307507_10010566
211 Ga0307510_10050617
212 Ga0395899_0017552
213 Ga0436364_1380397
214 Ga0436365_1378611
215 Ga0439442_012607
216 Ga0439449_0036325
217 Ga0466972_0008783
218 Ga0466972_0134108
219 Ga0466966_0007641
220 Ga0466961_0047251
221 Ga0466963_0015356
222 Ga0466968_0005381
223 Ga0466967_0002832
224 Ga0466967_0403654
225 Ga0495592_0039359
226 Ga0495608_0060405
227 Ga0495618_0149182
228 Ga0495628_0030524
229 Ga0495640_0046547
230 Ga0495667_0060421
231 Ga0495668_0000161
232 Ga0495635_0174370
233 Ga0495623_0165788
234 Ga0495684_0212612
235 Ga0501032_0027199
236 Ga0501032_0066468
237 Ga0501032_0113250
238 Ga0501033_0005968
239 Ga0501033_0010874
240 Ga0501034_0024075
241 Ga0501036_0077363
242 Ga0501038_0028801
243 Ga0501038_0273158
244 Ga0501043_0002579
245 Ga0501043_0039015
246 Ga0501043_0121626
247 Ga0501046_0000203
248 Ga0501047_0008313
249 Ga0501047_0290454
250 Ga0501070_0076164
251 Ga0501035_0002681
252 Ga0501035_0019605
253 Ga0501035_0090026
254 Ga0501044_0000470
255 Ga0501044_0012354
256 Ga0501044_0137222
257 Ga0501044_0172680
258 Ga0501045_0037155
259 nmdc:mga03n38_34784_c1
260 nmdc:mga04h51_3907_c1
261 nmdc:mga0qj67_223_c1
262 nmdc:mga06r32_190916_c1
263 Ga0495595_0094666
264 Ga0495619_0005893
265 Ga0500644_0009644
266 2566993941
267 2583151233
268 2586062170
269 2644515695
270 2676479386
271 2738889151
272 2774394555
273 2776371355
274 2791909858
275 2795796816
276 2809194589
277 2809588676
278 2812349338
279 2863072127
280 2866557279
281 2866614635
282 2867476867
283 2891396819
284 2891559437
285 2891972958
286 2899368243
287 2904536989
288 2915773867
289 2917740804
290 2922559610
291 2997455408
292 3006327946
293 3006399364
294 8003319419
295 8054163231
296 8056210699

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

245

394

0.96

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

260

374

0.91

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

31

142

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mpi-assembly2.cif.gz_C structure of the glutaryl-coenzyme a dehydrogenase glutaryl-coa complex 0.9033 1 359
2vig-assembly1.cif.gz_A crystal structure of human short-chain acyl coa dehydrogenase 0.8995 5 357
4l1f-assembly1.cif.gz_A electron transferring flavoprotein of acidaminococcus fermentans: towards a mechanism of flavin-based electron bifurcation 0.8991 1 356
3mpi-assembly2.cif.gz_C structure of the glutaryl-coenzyme a dehydrogenase glutaryl-coa complex 0.8986 1 359
7xp7-assembly1.cif.gz_A crystal structure of the flavoprotein colb1 catalyzing assembly line-tethered cysteine dehydrogenation 0.8981 9 354
ID Description Score Start End Superfamily
af_I6YCF5_180_316_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9506 223 356 1.20.140.10
af_P96845_177_319_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9419 211 355 1.20.140.10
af_Q22347_263_410_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9416 221 357 1.20.140.10
1t9gD03 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9328 224 357 1.20.140.10
3pfdB03 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9324 223 356 1.20.140.10
ID Description Score Start End GO Terms
AF-A0A1V0U0V7-F1-model_v4 Acyl-CoA dehydrogenase 0.9783 2 360 GO:0003995
GO:0050660
AF-A0A1V0U0V7-F1-model_v4 Acyl-CoA dehydrogenase 0.973 2 360 GO:0003995
GO:0050660
AF-A0A6P2BWA5-F1-model_v4 Acyl-CoA dehydrogenase 0.9579 1 360 GO:0003995
GO:0050660
AF-A0A7G1IH82-F1-model_v4 Uncharacterized protein 0.957 74 242 GO:0016627
AF-A0A6P2BWA5-F1-model_v4 Acyl-CoA dehydrogenase 0.9553 1 360 GO:0003995
GO:0050660

Map