F200358

General Info

Members Datasets Scaffolds Average Seq Length
147 97 294 206

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10154235|Ga0157369_101542352
Length 236
Sequence MTGKTANISLEALGDSPQLNVDIKRFNSSGLPLVEAFYTLQGEGFHQGKAAYFIRLAGCDVGCFWCDVKESWQESAHPVIEIEEIIREAKQSTINTQQSMVNGGPIIVITGGEPLLHDLDELTRQLQVQHFKTHIETSGSSPLSGSWDWICLSPKKFKKPLQEVLKAANELKVIVYNKSDFKWAEENAALVSSGCKLYLQPEWSKSAEITPLIIEYIKANPQWQLSLQVHKYINIP

Samples

Sample ID Description Type Environment
1 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
11 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
12 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
13 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
14 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
42 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
43 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
68 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
69 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
70 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
75 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
83 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
84 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
89 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
90 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
91 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
92 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
93 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
94 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
95 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
96 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
97 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.24
Metatranscriptomes 0
Isolates 4.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.04
Nodule 0
Rhizoplane 0
Rhizosphere 88.44
Stem 0
Stem Tuber 0
Unclassified 12.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157369_10154235 3300013105 Bacteria 2427
2 SwRhRL2b_contig_2166134 2162886007 Bacteria 1131
3 JGI25154J39366_1000004 3300002738 Bacteria 346460
4 JGI25406J46586_10003120 3300003203 Bacteria 7785
5 rootH2_10028622 3300003320 Bacteria 1863
6 Ga0065704_10114772 3300005289 Bacteria 1873
7 Ga0065704_10159257 3300005289 Bacteria 1367
8 Ga0065712_10316766 3300005290 Bacteria 835
9 Ga0065715_10036229 3300005293 Bacteria 935
10 Ga0070658_10000223 3300005327 Bacteria 50518
11 Ga0070658_10051671 3300005327 Bacteria 3331
12 Ga0070683_100150475 3300005329 Unclassified 2206
13 Ga0070690_100013444 3300005330 Bacteria 4837
14 Ga0070670_100127034 3300005331 Bacteria 2201
15 Ga0070670_100255379 3300005331 Bacteria 1527
16 Ga0068869_100069280 3300005334 Bacteria 2608
17 Ga0070666_10032016 3300005335 Bacteria 3473
18 Ga0070680_100075285 3300005336 Bacteria 2779
19 Ga0070661_100027063 3300005344 Bacteria 4128
20 Ga0070667_100205621 3300005367 Unclassified 1748
21 Ga0070662_100059814 3300005457 Bacteria 2776
22 Ga0070679_100060265 3300005530 Bacteria 3782
23 Ga0068853_100140939 3300005539 Bacteria 2164
24 Ga0068853_100658800 3300005539 Bacteria 997
25 Ga0070693_100036433 3300005547 Bacteria 2735
26 Ga0068855_100147568 3300005563 Bacteria 2676
27 Ga0070664_100006721 3300005564 Bacteria 9270
28 Ga0070664_100012225 3300005564 Bacteria 6976
29 Ga0070664_100094975 3300005564 Bacteria 2586
30 Ga0070664_100167760 3300005564 Bacteria 1946
31 Ga0068857_100186783 3300005577 Bacteria 1887
32 Ga0068854_100139579 3300005578 Bacteria 1858
33 Ga0068854_100421921 3300005578 Unclassified 1108
34 Ga0068856_100020043 3300005614 Bacteria 6492
35 Ga0068852_100006525 3300005616 Bacteria 8437
36 Ga0068852_100021879 3300005616 Bacteria 5116
37 Ga0068852_100414916 3300005616 Bacteria 1327
38 Ga0068852_100861973 3300005616 Bacteria 922
39 Ga0068871_100275826 3300006358 Bacteria 1470
40 Ga0105240_10411919 3300009093 Unclassified 1520
41 Ga0114129_10110712 3300009147 Bacteria 3790
42 Ga0105237_10372817 3300009545 Bacteria 1432
43 Ga0105249_10251475 3300009553 Bacteria 1752
44 Ga0157373_10025349 3300013100 Bacteria 4290
45 Ga0157373_10113936 3300013100 Bacteria 1900
46 Ga0157371_10005569 3300013102 Bacteria 10590
47 Ga0157371_10037484 3300013102 Bacteria 3469
48 Ga0157370_10039481 3300013104 Unclassified 4562
49 Ga0157370_10104867 3300013104 Bacteria 2646
50 Ga0157369_10020928 3300013105 Bacteria 7313
51 Ga0157374_10068496 3300013296 Bacteria 3339
52 Ga0157374_10168143 3300013296 Unclassified 2138
53 Ga0157374_10246178 3300013296 Bacteria 1759
54 Ga0157378_10025742 3300013297 Bacteria 5183
55 Ga0163162_10222847 3300013306 Bacteria 2015
56 Ga0163162_10319274 3300013306 Bacteria 1686
57 Ga0157372_10007769 3300013307 Bacteria 11388
58 Ga0157372_10174266 3300013307 Bacteria 2489
59 Ga0157372_10186284 3300013307 Bacteria 2404
60 Ga0157372_10312206 3300013307 Bacteria 1830
61 Ga0157372_10438848 3300013307 Bacteria 1522
62 Ga0157372_10459143 3300013307 Bacteria 1484
63 Ga0157372_10506151 3300013307 Bacteria 1408
64 Ga0157372_10551306 3300013307 Bacteria 1344
65 Ga0157372_10694977 3300013307 Bacteria 1184
66 Ga0157372_10924508 3300013307 Bacteria 1011
67 Ga0157372_11380806 3300013307 Bacteria 812
68 Ga0157372_11585417 3300013307 Bacteria 754
69 Ga0157375_10215399 3300013308 Bacteria 2078
70 Ga0157375_10371147 3300013308 Bacteria 1597
71 Ga0157376_10060793 3300014969 Bacteria 3174
72 Ga0213876_10160045 3300021384 Unclassified 1198
73 Ga0213876_10244383 3300021384 Bacteria 954
74 Ga0207656_10075806 3300025321 Unclassified 1503
75 Ga0207682_10219534 3300025893 Bacteria 879
76 Ga0207647_10182078 3300025904 Bacteria 1220
77 Ga0207705_10135929 3300025909 Bacteria 1833
78 Ga0207660_10635376 3300025917 Bacteria 870
79 Ga0207649_10062339 3300025920 Bacteria 2350
80 Ga0207649_10105762 3300025920 Unclassified 1871
81 Ga0207652_10192132 3300025921 Bacteria 1836
82 Ga0207652_10369747 3300025921 Unclassified 1294
83 Ga0207650_10034845 3300025925 Unclassified 3652
84 Ga0207644_10078200 3300025931 Bacteria 2438
85 Ga0207644_10409074 3300025931 Bacteria 1110
86 Ga0207706_10009168 3300025933 Bacteria 9099
87 Ga0207661_10046536 3300025944 Unclassified 3440
88 Ga0207661_10499517 3300025944 Bacteria 1111
89 Ga0207679_10039778 3300025945 Unclassified 3361
90 Ga0207679_10777836 3300025945 Bacteria 872
91 Ga0207667_10168059 3300025949 Bacteria 2254
92 Ga0207651_10244952 3300025960 Bacteria 1463
93 Ga0207712_10608338 3300025961 Unclassified 946
94 Ga0207640_10295815 3300025981 Bacteria 1278
95 Ga0207639_10172934 3300026041 Bacteria 1831
96 Ga0207639_10223397 3300026041 Bacteria 1628
97 Ga0207648_10367793 3300026089 Bacteria 1298
98 Ga0207674_10057583 3300026116 Bacteria 3939
99 Ga0207698_11059513 3300026142 Bacteria 823
100 Ga0207698_11148018 3300026142 Unclassified 790
101 Ga0307515_10000010 3300028794 Bacteria 651586
102 Ga0307515_10000107 3300028794 Bacteria 197046
103 Ga0307515_10215386 3300028794 Bacteria 1753
104 Ga0307408_100000953 3300031548 Bacteria 22475
105 Ga0395905_0197188 3300037471 Unclassified 1888
106 Ga0436365_0362468 3300039437 Bacteria 1966
107 Ga0436365_0951333 3300039437 Bacteria 12859
108 Ga0436365_1132792 3300039437 Unclassified 668
109 Ga0439431_0001343 3300041997 Bacteria 5422
110 Ga0439431_0045431 3300041997 Bacteria 1128
111 Ga0450898_032152 3300042134 Bacteria 967
112 Ga0439434_0018857 3300042435 Bacteria 2068
113 Ga0451577_0579969 3300042876 Bacteria 1018
114 Ga0453684_0006862 3300044712 Bacteria 21382
115 Ga0466957_0260401 3300044842 Bacteria 1156
116 Ga0451576_0443924 3300045051 Unclassified 1362
117 Ga0496121_0000010 3300048924 Bacteria 793488
118 Ga0501033_0273690 3300049570 Bacteria 1193
119 Ga0501034_0024307 3300049571 Bacteria 6163
120 Ga0501034_0031601 3300049571 Bacteria 5378
121 Ga0501034_0074393 3300049571 Bacteria 3405
122 Ga0501034_0077124 3300049571 Bacteria 3338
123 Ga0501036_0407074 3300049572 Bacteria 1135
124 Ga0501037_0050343 3300049573 Bacteria 3049
125 Ga0501043_0593005 3300049579 Bacteria 819
126 Ga0501047_0139524 3300049581 Bacteria 2303
127 Ga0501070_0135168 3300049586 Bacteria 2036
128 Ga0501073_0199503 3300049589 Bacteria 1384
129 Ga0501253_016559 3300049683 Bacteria 1229
130 Ga0501225_0044254 3300049705 Bacteria 1231
131 Ga0501080_0234729 3300049742 Bacteria 1676
132 Ga0501080_0457358 3300049742 Bacteria 1144
133 Ga0501035_0288684 3300049822 Bacteria 1385
134 Ga0501044_0247380 3300049823 Bacteria 1725
135 Ga0501044_0334929 3300049823 Unclassified 1435
136 Ga0501044_0405520 3300049823 Bacteria 1275
137 Ga0501044_0467993 3300049823 Bacteria 1165
138 Ga0500646_0008896 3300053090 Bacteria 2571
139 Ga0500652_002599 3300053131 Bacteria 5455
140 Ga0500568_0044619 3300053139 Bacteria 1767
141 2839991229 2839989709 Bacteria 3773432
142 2883073182 2883068021 Bacteria 6192739
143 2896087421 2896085136 Bacteria 6129793
144 2896114755 2896109856 Bacteria 7140722
145 2896320044 2896317667 Bacteria 4606601
146 2910248721 2910245624 Bacteria 6935613
147 3003234270 3003233435 Bacteria 4458031
148 Ga0157369_10154235
149 SwRhRL2b_contig_2166134
150 JGI25154J39366_1000004
151 JGI25406J46586_10003120
152 rootH2_10028622
153 Ga0065704_10114772
154 Ga0065704_10159257
155 Ga0065712_10316766
156 Ga0065715_10036229
157 Ga0070658_10000223
158 Ga0070658_10051671
159 Ga0070683_100150475
160 Ga0070690_100013444
161 Ga0070670_100127034
162 Ga0070670_100255379
163 Ga0068869_100069280
164 Ga0070666_10032016
165 Ga0070680_100075285
166 Ga0070661_100027063
167 Ga0070667_100205621
168 Ga0070662_100059814
169 Ga0070679_100060265
170 Ga0068853_100140939
171 Ga0068853_100658800
172 Ga0070693_100036433
173 Ga0068855_100147568
174 Ga0070664_100006721
175 Ga0070664_100012225
176 Ga0070664_100094975
177 Ga0070664_100167760
178 Ga0068857_100186783
179 Ga0068854_100139579
180 Ga0068854_100421921
181 Ga0068856_100020043
182 Ga0068852_100006525
183 Ga0068852_100021879
184 Ga0068852_100414916
185 Ga0068852_100861973
186 Ga0068871_100275826
187 Ga0105240_10411919
188 Ga0114129_10110712
189 Ga0105237_10372817
190 Ga0105249_10251475
191 Ga0157373_10025349
192 Ga0157373_10113936
193 Ga0157371_10005569
194 Ga0157371_10037484
195 Ga0157370_10039481
196 Ga0157370_10104867
197 Ga0157369_10020928
198 Ga0157374_10068496
199 Ga0157374_10168143
200 Ga0157374_10246178
201 Ga0157378_10025742
202 Ga0163162_10222847
203 Ga0163162_10319274
204 Ga0157372_10007769
205 Ga0157372_10174266
206 Ga0157372_10186284
207 Ga0157372_10312206
208 Ga0157372_10438848
209 Ga0157372_10459143
210 Ga0157372_10506151
211 Ga0157372_10551306
212 Ga0157372_10694977
213 Ga0157372_10924508
214 Ga0157372_11380806
215 Ga0157372_11585417
216 Ga0157375_10215399
217 Ga0157375_10371147
218 Ga0157376_10060793
219 Ga0213876_10160045
220 Ga0213876_10244383
221 Ga0207656_10075806
222 Ga0207682_10219534
223 Ga0207647_10182078
224 Ga0207705_10135929
225 Ga0207660_10635376
226 Ga0207649_10062339
227 Ga0207649_10105762
228 Ga0207652_10192132
229 Ga0207652_10369747
230 Ga0207650_10034845
231 Ga0207644_10078200
232 Ga0207644_10409074
233 Ga0207706_10009168
234 Ga0207661_10046536
235 Ga0207661_10499517
236 Ga0207679_10039778
237 Ga0207679_10777836
238 Ga0207667_10168059
239 Ga0207651_10244952
240 Ga0207712_10608338
241 Ga0207640_10295815
242 Ga0207639_10172934
243 Ga0207639_10223397
244 Ga0207648_10367793
245 Ga0207674_10057583
246 Ga0207698_11059513
247 Ga0207698_11148018
248 Ga0307515_10000010
249 Ga0307515_10000107
250 Ga0307515_10215386
251 Ga0307408_100000953
252 Ga0395905_0197188
253 Ga0436365_0362468
254 Ga0436365_0951333
255 Ga0436365_1132792
256 Ga0439431_0001343
257 Ga0439431_0045431
258 Ga0450898_032152
259 Ga0439434_0018857
260 Ga0451577_0579969
261 Ga0453684_0006862
262 Ga0466957_0260401
263 Ga0451576_0443924
264 Ga0496121_0000010
265 Ga0501033_0273690
266 Ga0501034_0024307
267 Ga0501034_0031601
268 Ga0501034_0074393
269 Ga0501034_0077124
270 Ga0501036_0407074
271 Ga0501037_0050343
272 Ga0501043_0593005
273 Ga0501047_0139524
274 Ga0501070_0135168
275 Ga0501073_0199503
276 Ga0501253_016559
277 Ga0501225_0044254
278 Ga0501080_0234729
279 Ga0501080_0457358
280 Ga0501035_0288684
281 Ga0501044_0247380
282 Ga0501044_0334929
283 Ga0501044_0405520
284 Ga0501044_0467993
285 Ga0500646_0008896
286 Ga0500652_002599
287 Ga0500568_0044619
288 2839991229
289 2883073182
290 2896087421
291 2896114755
292 2896320044
293 2910248721
294 3003234270

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

53

166

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6nhl-assembly1.cif.gz_B-2 crystal structure of quee from escherichia coli 0.8913 2 184
6nhl-assembly1.cif.gz_A crystal structure of quee from escherichia coli 0.8738 2 184
6nhl-assembly1.cif.gz_B-2 crystal structure of quee from escherichia coli 0.8438 2 184
4njh-assembly1.cif.gz_B crystal structure of quee from burkholderia multivorans in complex with adomet and 6-carboxy-5,6,7,8-tetrahydropterin 0.8332 2 193
6nhl-assembly1.cif.gz_A crystal structure of quee from escherichia coli 0.8272 2 184
ID Description Score Start End Superfamily
af_P64554_2_223_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8776 2 193 3.20.20.70
af_P64554_2_223_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8692 2 193 3.20.20.70
4njjA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8364 3 193 3.20.20.70
af_Q2G1X7_4_231_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8344 2 187 3.20.20.70
4njjA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8242 3 193 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A4Q6DN63-F1-model_v4 7-carboxy-7-deazaguanine synthase QueE 0.9938 65 193 GO:0051539
AF-A0A4Q5YDI2-F1-model_v4 7-carboxy-7-deazaguanine synthase QueE 0.9925 53 193 GO:0051539
AF-A0A090PW06-F1-model_v4 deleted 0.9924 77 193
AF-A0A7Y3GPK6-F1-model_v4 7-carboxy-7-deazaguanine synthase QueE 0.9911 67 193 GO:0051539
AF-A0A4Q3GUW7-F1-model_v4 deleted 0.9876 59 193

Map