F200274

General Info

Members Datasets Scaffolds Average Seq Length
147 123 113 822

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10050096|Ga0105248_100500963
Length 894
Sequence MERILSFSSADVDDVHPCAALLRLGPCWWGCTGAPMKEYRGFMAKAGEGADTTASSTYVDVGGHRLRLTNLDKVLYPETGTTKGEVIDYYSRVADALIMHARDRPATRKRWVSGVGTAEKPGQLFFEKNLPDSAPDWITHRSIQHSDHVNEYPLVNNLATLVWIAQQAALEIHVPQWRFGRNGARRNPDRMVLDLDPGEGAGLAECAELAQLVRELLQGMGLDPMPVTSGSKGIHLYAALDGTQSSDEVSAVAHELARALEADHPDLVVSDMKKAVRGGKVLLDWSQNNGSKTTVVPYSLRGRLHPTVAAPRTWREIASPGLTQLEFTEVLKRLESKGDLLADLSAGHLARQTGEDLAEYRRMRNKNVTPEPFGDVPGSDPSWTPDPANPHFVIQEHHASSLHYDFRLERDGVLVSWAVPKGVPTDPKQNHLAVHVEDHPFEYGTFEGVIPKGEYGAGDVAIWDRGRYELEKWRDGDGNEGGEVILTIHGEKHGSHRLALIQTKQGDNPKNWMLHLMKSQNPVDWDAEGGPVDKVTGSKWHGHAAVSTGRKGLGPPKKTIVGSRISSDSLHPMLATLGAIAGVDRFRGGDDWAYEMKWDGIRAIATIRGDELSLRSRNGLDLTPSYPELAALLDSVTGDAVLDGEIVALDAKGRPSFGALQQRMGLTSPRDVERARLATPVHYFVFDVLSLGDRSQLAVPYEKRRALLLTSVTDRGPRGNPIITVPPDAGRDLDSALATSKKLGLEGVMAKRLDSPYREGKRSRDWIKLKHTLTQEVVVGGWRPGTGHRADSVGSLLVGIPDADGLRYVGRVGTGFTDRQLAELRTRLDALARKTNPLIDVPSADARDAHWVTPSLVGEVEFAEITGDGRLRAPTWKGWRPDKNPDQVVREVAG

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221546 Microbacterium sp. Root53 Isolate Unclassified
3 2643221572 Leifsonia sp. Root60 Isolate Unclassified
4 2643221613 Oerskovia sp. Root22 Isolate Unclassified
5 2643221616 Leifsonia sp. Root227 Isolate Unclassified
6 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
7 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
8 2643221721 Oerskovia sp. Root918 Isolate Unclassified
9 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
10 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
11 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
12 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
13 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
14 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
15 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
16 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
17 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
18 2919069694 Microbacterium sp. 1154 Isolate Unclassified
19 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
20 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
21 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
22 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
23 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
24 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
25 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
26 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
27 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
28 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
29 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
30 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
31 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
32 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
33 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
34 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
35 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
36 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
37 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
38 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
39 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
40 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
41 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
42 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
43 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
44 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
45 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
48 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
61 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
64 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
87 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
88 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
89 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
90 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
91 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
92 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
95 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
96 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
97 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
98 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
110 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
115 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
116 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
119 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
120 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
121 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
122 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
123 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.87
Metatranscriptomes 0
Isolates 23.13

Biome Distribution

Category Percentage (%)
Aerial Root 0.68
Bulb 0
Endosphere 21.77
Nodule 0
Rhizoplane 0
Rhizosphere 53.74
Stem 0
Stem Tuber 0.68
Unclassified 23.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25165J46597_1000004 3300003214 Bacteria 667510
2 Ga0055539_1000005 3300003752 Bacteria 609598
3 Ga0055533_1000001 3300003756 Bacteria 1863437
4 Ga0055525_1000237 3300003759 Bacteria 57574
5 Ga0055527_1000001 3300003760 Bacteria 850044
6 Ga0055529_1000019 3300003763 Bacteria 332786
7 Ga0055541_1001008 3300003841 Bacteria 6565
8 Ga0070658_10000034 3300005327 Bacteria 146880
9 Ga0070661_100027785 3300005344 Bacteria 4076
10 Ga0070659_100001116 3300005366 Bacteria 19583
11 Ga0070667_100060903 3300005367 Bacteria 3195
12 Ga0068855_100001813 3300005563 Bacteria 26658
13 Ga0068855_100048249 3300005563 Bacteria 5027
14 Ga0068857_100000467 3300005577 Bacteria 28795
15 Ga0068852_100022009 3300005616 Bacteria 5102
16 Ga0068851_10000005 3300005834 Bacteria 262808
17 Ga0068858_100000281 3300005842 Bacteria 54790
18 Ga0105248_10000725 3300009177 Bacteria 37168
19 Ga0105248_10050096 3300009177 Bacteria 4683
20 Ga0105237_10000222 3300009545 Bacteria 80237
21 Ga0105237_10048486 3300009545 Bacteria 4270
22 Ga0105238_10000205 3300009551 Bacteria 65420
23 Ga0105239_10045697 3300010375 Bacteria 4799
24 Ga0157369_10020790 3300013105 Bacteria 7335
25 Ga0209566_100105 3300025225 Bacteria 125766
26 Ga0209674_100001 3300025226 Bacteria 4013750
27 Ga0209672_100006 3300025228 Bacteria 1004497
28 Ga0209147_100807 3300025229 Bacteria 15052
29 Ga0209563_100001 3300025230 Bacteria 4013775
30 Ga0207427_100010 3300025231 Bacteria 648610
31 Ga0209437_100972 3300025233 Bacteria 10212
32 Ga0209677_100001 3300025253 Bacteria 4013787
33 Ga0209677_100743 3300025253 Bacteria 16528
34 Ga0209148_1000015 3300025254 Bacteria 850103
35 Ga0209148_1001009 3300025254 Bacteria 17792
36 Ga0209233_1000001 3300025261 Bacteria 2992747
37 Ga0209455_1000013 3300025272 Bacteria 850103
38 Ga0207656_10000001 3300025321 Bacteria 1323684
39 Ga0207656_10000003 3300025321 Bacteria 771644
40 Ga0207656_10000004 3300025321 Bacteria 632320
41 Ga0207655_1001200 3300025728 Bacteria 24990
42 Ga0207705_10000001 3300025909 Bacteria 2061880
43 Ga0207705_10046252 3300025909 Bacteria 3127
44 Ga0207654_10000003 3300025911 Bacteria 1030378
45 Ga0207695_10003900 3300025913 Bacteria 20637
46 Ga0207695_10053360 3300025913 Bacteria 4229
47 Ga0207671_10000001 3300025914 Bacteria 1318881
48 Ga0207694_10000039 3300025924 Bacteria 186164
49 Ga0207644_10030540 3300025931 Bacteria 3749
50 Ga0207690_10001195 3300025932 Bacteria 16403
51 Ga0207711_10011292 3300025941 Bacteria 7420
52 Ga0207711_10019234 3300025941 Bacteria 5686
53 Ga0207667_10001078 3300025949 Bacteria 34649
54 Ga0207667_10006154 3300025949 Bacteria 14580
55 Ga0207703_10000173 3300026035 Bacteria 75642
56 Ga0207678_10033944 3300026067 Bacteria 4444
57 Ga0207676_10022619 3300026095 Bacteria 4625
58 Ga0207674_10004182 3300026116 Bacteria 17434
59 Ga0207698_10001036 3300026142 Bacteria 16183
60 Ga0207698_10015001 3300026142 Bacteria 5174
61 Ga0307514_10006388 3300031649 Bacteria 10274
62 Ga0307514_10033446 3300031649 Bacteria 4103
63 Ga0307412_10016163 3300031911 Bacteria 4438
64 Ga0395899_0003716 3300037312 Bacteria 12075
65 Ga0395900_0007154 3300037418 Bacteria 11566
66 Ga0395900_0048355 3300037418 Bacteria 4381
67 Ga0395898_0000015 3300037466 Bacteria 439819
68 Ga0466972_0010397 3300044658 Bacteria 4673
69 Ga0466961_0025328 3300044693 Bacteria 3815
70 Ga0466970_0017205 3300044765 Bacteria 3733
71 Ga0466960_0002442 3300044901 Bacteria 6999
72 Ga0495590_0000600 3300046457 Bacteria 16925
73 Ga0495650_0000638 3300046471 Bacteria 46775
74 Ga0495672_0010068 3300047320 Bacteria 6766
75 Ga0495686_0011627 3300047472 Bacteria 6197
76 Ga0496117_0000053 3300048920 Bacteria 279396
77 Ga0496117_0024661 3300048920 Bacteria 4748
78 Ga0496118_0005995 3300048921 Bacteria 13561
79 Ga0496119_0001871 3300048922 Bacteria 24289
80 Ga0496119_0022998 3300048922 Bacteria 4439
81 Ga0496120_0000732 3300048923 Bacteria 48102
82 Ga0496120_0001073 3300048923 Bacteria 36038
83 Ga0496120_0007236 3300048923 Bacteria 8306
84 Ga0496121_0000076 3300048924 Bacteria 239775
85 Ga0496121_0020934 3300048924 Bacteria 6437
86 Ga0496122_0000907 3300048925 Bacteria 54584
87 Ga0496122_0005945 3300048925 Bacteria 14285
88 Ga0496123_0002388 3300048926 Bacteria 23500
89 Ga0496125_0003751 3300048928 Bacteria 18093
90 Ga0496126_0033577 3300048929 Bacteria 4825
91 Ga0501032_0007392 3300049569 Bacteria 8021
92 Ga0501034_0020536 3300049571 Bacteria 6745
93 Ga0501037_0015703 3300049573 Bacteria 5571
94 Ga0501039_0038449 3300049575 Bacteria 3695
95 Ga0501043_0000796 3300049579 Bacteria 28075
96 Ga0501070_0000399 3300049586 Bacteria 39685
97 Ga0501072_0015969 3300049588 Bacteria 5756
98 Ga0501073_0035004 3300049589 Bacteria 3571
99 Ga0501080_0000162 3300049742 Bacteria 48187
100 Ga0501035_0001189 3300049822 Bacteria 27109
101 Ga0501044_0002079 3300049823 Bacteria 23074
102 Ga0500643_000289 3300053087 Bacteria 43129
103 Ga0500556_0000062 3300053104 Bacteria 110818
104 Ga0500559_0000263 3300053136 Bacteria 41139
105 Ga0500559_0004690 3300053136 Bacteria 6437
106 Ga0500568_0000060 3300053139 Bacteria 107901
107 Ga0500568_0001707 3300053139 Bacteria 13708
108 Ga0500573_0000007 3300053140 Bacteria 272970
109 Ga0500573_0003317 3300053140 Bacteria 8315
110 Ga0500588_0002610 3300053146 Bacteria 3697
111 Ga0500616_0000317 3300053153 Bacteria 69238
112 Ga0500616_0000397 3300053153 Bacteria 59709
113 Ga0500645_002462 3300053730 Bacteria 8218

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048928 Ga0496125_0003751 Ga0496125_0003751_10_2316 721
2 3300049571 Ga0501034_0020536 Ga0501034_0020536_4281_6641 737
3 3300049589 Ga0501073_0035004 Ga0501073_0035004_204_2645 752
4 3300049742 Ga0501080_0000162 Ga0501080_0000162_17245_19686 752
5 3300049588 Ga0501072_0015969 Ga0501072_0015969_2930_5302 756
6 3300053153 Ga0500616_0000397 Ga0500616_0000397_28681_31035 757
7 3300046457 Ga0495590_0000600 Ga0495590_0000600_12133_14532 758
8 3300049579 Ga0501043_0000796 Ga0501043_0000796_24414_26810 758
9 3300053146 Ga0500588_0002610 Ga0500588_0002610_1241_3628 758
10 3300044765 Ga0466970_0017205 Ga0466970_0017205_567_2999 761
11 3300044901 Ga0466960_0002442 Ga0466960_0002442_3650_6217 763
12 3300053139 Ga0500568_0000060 Ga0500568_0000060_20901_23390 767
13 3300013105 Ga0157369_10020790 Ga0157369_100207906 768
14 3300047472 Ga0495686_0011627 Ga0495686_0011627_2990_5479 768
15 3300053104 Ga0500556_0000062 Ga0500556_0000062_20825_23314 768
16 iso_pu_bacteria 2643221546 2643753622 770
17 iso_pu_bacteria 2974294766 2974297460 771
18 iso_pu_bacteria 2974324384 2974326302 771
19 iso_pu_bacteria 2977264416 2977266998 771
20 iso_pu_bacteria 8016254467 8016257255 771
21 3300031649 Ga0307514_10006388 Ga0307514_100063884 772
22 3300048920 Ga0496117_0000053 Ga0496117_0000053_16701_19163 772
23 3300048922 Ga0496119_0022998 Ga0496119_0022998_356_2818 772
24 3300048923 Ga0496120_0001073 Ga0496120_0001073_19477_21939 772
25 3300049822 Ga0501035_0001189 Ga0501035_0001189_20804_23299 772
26 3300049823 Ga0501044_0002079 Ga0501044_0002079_17037_19532 772
27 iso_pu_bacteria 2773857758 2774380093 772
28 iso_pu_bacteria 2904509784 2904511709 772
29 iso_pu_bacteria 2908678064 2908680633 772
30 iso_pu_bacteria 2919069694 2919071812 772
31 iso_pu_bacteria 2977228692 2977231697 772
32 iso_pu_bacteria 2977236895 2977237059 772
33 iso_pu_bacteria 2984542743 2984545150 772
34 3300048925 Ga0496122_0005945 Ga0496122_0005945_1292_3754 773
35 3300048926 Ga0496123_0002388 Ga0496123_0002388_19959_22421 773
36 3300005367 Ga0070667_100060903 Ga0070667_1000609031 774
37 3300053140 Ga0500573_0000007 Ga0500573_0000007_153685_156078 774
38 iso_pu_bacteria 2857737099 2857739169 774
39 3300025728 Ga0207655_1001200 Ga0207655_10012006 775
40 3300037418 Ga0395900_0048355 Ga0395900_0048355_209_2851 776
41 3300044658 Ga0466972_0010397 Ga0466972_0010397_18_2441 776
42 iso_pu_bacteria 2946033335 2946036958 776
43 3300048924 Ga0496121_0000076 Ga0496121_0000076_178980_181487 777
44 3300048924 Ga0496121_0020934 Ga0496121_0020934_2082_4580 777
45 3300044693 Ga0466961_0025328 Ga0466961_0025328_173_2629 778
46 iso_pu_bacteria 2757320536 2758226431 778
47 iso_pu_bacteria 2939657138 2939657526 778
48 3300025931 Ga0207644_10030540 Ga0207644_100305402 779
49 3300026095 Ga0207676_10022619 Ga0207676_100226192 779
50 3300053139 Ga0500568_0001707 Ga0500568_0001707_5839_8316 779
51 3300025253 Ga0209677_100743 Ga0209677_1007433 782
52 3300025909 Ga0207705_10046252 Ga0207705_100462521 782
53 iso_pu_bacteria 2643221635 2644198840 782
54 iso_pu_bacteria 2870622029 2870623121 782
55 iso_pu_bacteria 2946059875 2946060201 782
56 3300049569 Ga0501032_0007392 Ga0501032_0007392_148_2625 783
57 3300049573 Ga0501037_0015703 Ga0501037_0015703_1782_4259 783
58 3300049575 Ga0501039_0038449 Ga0501039_0038449_160_2637 783
59 iso_pu_bacteria 2643221613 2644082950 783
60 iso_pu_bacteria 2643221721 2644665906 783
61 iso_pu_bacteria 2935890801 2935891700 783
62 3300005577 Ga0068857_100000467 Ga0068857_10000046724 784
63 3300005834 Ga0068851_10000005 Ga0068851_10000005180 784
64 3300009545 Ga0105237_10000222 Ga0105237_1000022231 784
65 3300009551 Ga0105238_10000205 Ga0105238_1000020530 784
66 3300010375 Ga0105239_10045697 Ga0105239_100456972 784
67 3300025321 Ga0207656_10000001 Ga0207656_10000001124 784
68 3300025321 Ga0207656_10000003 Ga0207656_10000003230 784
69 3300025321 Ga0207656_10000004 Ga0207656_1000000487 784
70 3300025913 Ga0207695_10003900 Ga0207695_1000390014 784
71 3300025914 Ga0207671_10000001 Ga0207671_10000001122 784
72 3300025924 Ga0207694_10000039 Ga0207694_10000039110 784
73 3300026116 Ga0207674_10004182 Ga0207674_1000418211 784
74 3300026142 Ga0207698_10001036 Ga0207698_100010364 784
75 3300048925 Ga0496122_0000907 Ga0496122_0000907_48936_51422 784
76 3300053140 Ga0500573_0003317 Ga0500573_0003317_5100_7544 784
77 iso_pu_bacteria 2852643534 2852645158 784
78 3300005327 Ga0070658_10000034 Ga0070658_1000003440 785
79 3300005366 Ga0070659_100001116 Ga0070659_10000111614 785
80 3300005563 Ga0068855_100048249 Ga0068855_1000482492 785
81 3300005842 Ga0068858_100000281 Ga0068858_10000028116 785
82 3300009177 Ga0105248_10050096 Ga0105248_100500963 785
83 3300025254 Ga0209148_1001009 Ga0209148_100100912 785
84 3300025909 Ga0207705_10000001 Ga0207705_10000001285 785
85 3300025911 Ga0207654_10000003 Ga0207654_10000003440 785
86 3300025913 Ga0207695_10053360 Ga0207695_100533602 785
87 3300025932 Ga0207690_10001195 Ga0207690_100011956 785
88 3300025941 Ga0207711_10019234 Ga0207711_100192342 785
89 3300026035 Ga0207703_10000173 Ga0207703_1000017335 785
90 3300026067 Ga0207678_10033944 Ga0207678_100339442 785
91 3300031649 Ga0307514_10033446 Ga0307514_100334463 785
92 3300046471 Ga0495650_0000638 Ga0495650_0000638_8632_11139 785
93 3300048922 Ga0496119_0001871 Ga0496119_0001871_4169_6760 785
94 3300048923 Ga0496120_0000732 Ga0496120_0000732_34363_36954 785
95 3300053087 Ga0500643_000289 Ga0500643_000289_37081_39570 785
96 iso_pu_bacteria 2939598168 2939600946 785
97 3300005344 Ga0070661_100027785 Ga0070661_1000277853 786
98 3300005563 Ga0068855_100001813 Ga0068855_1000018135 786
99 3300005616 Ga0068852_100022009 Ga0068852_1000220093 786
100 3300009177 Ga0105248_10000725 Ga0105248_1000072522 786
101 3300009545 Ga0105237_10048486 Ga0105237_100484862 786
102 3300025941 Ga0207711_10011292 Ga0207711_100112924 786
103 3300025949 Ga0207667_10001078 Ga0207667_1000107818 786
104 3300025949 Ga0207667_10006154 Ga0207667_1000615413 786
105 3300026142 Ga0207698_10015001 Ga0207698_100150012 786
106 3300047320 Ga0495672_0010068 Ga0495672_0010068_72_2567 786
107 3300048923 Ga0496120_0007236 Ga0496120_0007236_1992_4607 786
108 3300053153 Ga0500616_0000317 Ga0500616_0000317_63150_65774 786
109 iso_pu_bacteria 2585428157 2588108845 786
110 iso_pu_bacteria 2939660829 2939661223 786
111 iso_pu_bacteria 2945916053 2945916401 786
112 3300037312 Ga0395899_0003716 Ga0395899_0003716_5923_8442 787
113 3300037418 Ga0395900_0007154 Ga0395900_0007154_1516_3948 787
114 3300037466 Ga0395898_0000015 Ga0395898_0000015_175893_178343 787
115 3300049586 Ga0501070_0000399 Ga0501070_0000399_9814_12306 787
116 iso_pu_bacteria 8057345674 8057346216 787
117 3300003752 Ga0055539_1000005 Ga0055539_100000568 788
118 3300003756 Ga0055533_1000001 Ga0055533_10000011137 788
119 3300003759 Ga0055525_1000237 Ga0055525_100023728 788
120 3300003760 Ga0055527_1000001 Ga0055527_1000001612 788
121 3300003763 Ga0055529_1000019 Ga0055529_1000019118 788
122 3300003841 Ga0055541_1001008 Ga0055541_10010084 788
123 3300025225 Ga0209566_100105 Ga0209566_10010528 788
124 3300025226 Ga0209674_100001 Ga0209674_1000011137 788
125 3300025228 Ga0209672_100006 Ga0209672_100006363 788
126 3300025229 Ga0209147_100807 Ga0209147_10080713 788
127 3300025230 Ga0209563_100001 Ga0209563_1000011137 788
128 3300025253 Ga0209677_100001 Ga0209677_1000011137 788
129 3300025254 Ga0209148_1000015 Ga0209148_1000015207 788
130 3300025272 Ga0209455_1000013 Ga0209455_1000013207 788
131 3300048929 Ga0496126_0033577 Ga0496126_0033577_171_2600 788
132 3300053136 Ga0500559_0004690 Ga0500559_0004690_2594_5107 788
133 iso_pu_bacteria 2643221572 2643875645 789
134 iso_pu_bacteria 2643221669 2644382700 789
135 iso_pu_bacteria 2895660088 2895663361 789
136 iso_pu_bacteria 2964326757 2964329297 789
137 3300031911 Ga0307412_10016163 Ga0307412_100161633 790
138 3300053730 Ga0500645_002462 Ga0500645_002462_1015_3648 790
139 3300053136 Ga0500559_0000263 Ga0500559_0000263_11907_14543 791
140 3300048920 Ga0496117_0024661 Ga0496117_0024661_838_3321 792
141 3300048921 Ga0496118_0005995 Ga0496118_0005995_7048_9540 792
142 iso_pu_bacteria 2643221616 2644097028 794
143 iso_pu_bacteria 2884763398 2884765776 794
144 3300003214 JGI25165J46597_1000004 JGI25165J46597_1000004366 798
145 3300025231 Ga0207427_100010 Ga0207427_100010215 798
146 3300025233 Ga0209437_100972 Ga0209437_1009722 798
147 3300025261 Ga0209233_1000001 Ga0209233_10000011734 798

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

82

341

0.97

PF13298

LigD_N

DNA polymerase Ligase (LigD)

395

501

0.94

PF04679

DNA_ligase_A_C

ATP dependent DNA ligase C terminal region

789

883

0.92

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

572

770

0.85

Feature Viewer

pLDDT pTM Quality
86.88 0.46 Low
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Predicted Structure (AlphaFold2)

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