F199878

General Info

Members Datasets Scaffolds Average Seq Length
147 119 128 381

Family's Representative Sequence

Representative Sequence 3300005617|Ga0068859_100000030|Ga0068859_10000003035
Length 427
Sequence MSSRVIHFVYEYFFSIPLFTKGVHGIRNKLVMPLRFCHIILKASCMKNFFSRFLLLLIAGFLLVPGNSAAQKKESVSFKNWPAGSSPAAVGKRIADHFIVTPHTNFGRPEPPKVITYPETCTWYGALTFARETGDKKLAGQLAERFEPLFGKQDTLIPIPDHVDYSVFGAVPFELYMQTKQQKYLDLGKRFADKQWAQPEGKRVTADSHRFYDKGFTWQTRLWIDDMFMITAVQAQAYRATGDRTYIDRAARQMVFYLDSLQMPNGLFYHAPDVPFFWGRGDGWMAVGMSELLRSLPKDNPDRPRIMEGYKKMMGTLLKYQAADGMWRQLIDDSASWKETSCTGMFTFAFITGVKQGWLDDATYGPAARKAWLSLIKYINDNNDITDVCEGTNKKNDRQYYLDRKRNTGDLHGQAPLLWCATALLRK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
6 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
7 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
8 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
9 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
10 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
11 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
12 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
13 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
14 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
15 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
16 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
17 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
18 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
19 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
20 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
21 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
22 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
23 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
24 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
25 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
26 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
27 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
28 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
29 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
30 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
31 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
32 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
33 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
41 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
42 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
62 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
63 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
64 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
69 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
70 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
84 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
85 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
96 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
97 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
98 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
99 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
100 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
101 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
102 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
103 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
104 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
105 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
106 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
107 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
110 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
111 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
112 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
113 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
114 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
115 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
116 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
119 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.07
Metatranscriptomes 0
Isolates 12.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.52
Nodule 0
Rhizoplane 0.68
Rhizosphere 74.83
Stem 0
Stem Tuber 0
Unclassified 14.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1482229 2162886007 Bacteria 32470
2 JGI24751J29686_10011223 3300002459 Bacteria 1848
3 JGI25154J39366_1000005 3300002738 Bacteria 345115
4 JGI25153J46596_10001004 3300003215 Bacteria 17157
5 rootH2_10014542 3300003320 Bacteria 21659
6 rootL2_10028676 3300003322 Bacteria 4977
7 rootH1_10009750 3300003323 Bacteria 4766
8 Ga0055535_1002281 3300003761 Bacteria 7097
9 Ga0065165_1003976 3300005262 Bacteria 9678
10 Ga0065704_10000482 3300005289 Bacteria 19209
11 Ga0070670_100024909 3300005331 Bacteria 5148
12 Ga0070670_100072448 3300005331 Bacteria 2958
13 Ga0070670_100189557 3300005331 Unclassified 1786
14 Ga0068869_100010701 3300005334 Bacteria 5989
15 Ga0070666_10000728 3300005335 Bacteria 19966
16 Ga0070671_100020037 3300005355 Bacteria 5449
17 Ga0070698_100048581 3300005471 Bacteria 4336
18 Ga0068859_100000030 3300005617 Bacteria 175435
19 Ga0068859_100013550 3300005617 Bacteria 8176
20 Ga0068864_100008202 3300005618 Bacteria 8614
21 Ga0068864_100249285 3300005618 Unclassified 1648
22 Ga0068861_100021148 3300005719 Bacteria 4675
23 Ga0068863_100002325 3300005841 Bacteria 18893
24 Ga0068863_100006377 3300005841 Bacteria 11569
25 Ga0068860_100003675 3300005843 Bacteria 15789
26 Ga0068860_100024701 3300005843 Bacteria 5803
27 Ga0097621_100003096 3300006237 Bacteria 11411
28 Ga0097621_100167058 3300006237 Bacteria 1895
29 Ga0068871_100112253 3300006358 Bacteria 2293
30 Ga0075428_100125720 3300006844 Bacteria 2790
31 Ga0075430_100011048 3300006846 Bacteria 7649
32 Ga0097620_100000030 3300006931 Bacteria 175435
33 Ga0097620_100013550 3300006931 Bacteria 8176
34 Ga0111539_10310317 3300009094 Bacteria 1836
35 Ga0111539_10398955 3300009094 Unclassified 1602
36 Ga0105247_10075599 3300009101 Bacteria 2114
37 Ga0114129_10062313 3300009147 Bacteria 5210
38 Ga0114129_10097166 3300009147 Bacteria 4077
39 Ga0105241_10105934 3300009174 Bacteria 2243
40 Ga0105237_10005050 3300009545 Bacteria 15013
41 Ga0105237_10008035 3300009545 Bacteria 11477
42 Ga0105249_10015072 3300009553 Bacteria 6840
43 Ga0105249_10359428 3300009553 Bacteria 1477
44 Ga0105239_10033215 3300010375 Bacteria 5666
45 Ga0105239_10214648 3300010375 Bacteria 2157
46 Ga0157373_10000109 3300013100 Bacteria 64743
47 Ga0157371_10001595 3300013102 Bacteria 23267
48 Ga0157369_10000004 3300013105 Bacteria 479764
49 Ga0157378_10010687 3300013297 Bacteria 8024
50 Ga0157378_10104854 3300013297 Bacteria 2585
51 Ga0163162_10000348 3300013306 Bacteria 42027
52 Ga0163162_10212877 3300013306 Bacteria 2063
53 Ga0157372_10013725 3300013307 Bacteria 8657
54 Ga0157372_10016629 3300013307 Bacteria 7895
55 Ga0157372_10410580 3300013307 Bacteria 1578
56 Ga0157375_10284875 3300013308 Bacteria 1815
57 Ga0157380_10057018 3300014326 Unclassified 3109
58 Ga0157379_10154104 3300014968 Bacteria 2073
59 Ga0157376_10013959 3300014969 Bacteria 6010
60 Ga0157376_10106934 3300014969 Bacteria 2455
61 Ga0182007_10000027 3300015262 Bacteria 167235
62 Ga0182005_1000216 3300015265 Bacteria 38130
63 Ga0209436_100527 3300025208 Bacteria 16639
64 Ga0209258_100036 3300025242 Bacteria 428859
65 Ga0209646_1000017 3300025246 Bacteria 488265
66 Ga0209026_1000538 3300025250 Bacteria 26088
67 Ga0209148_1000230 3300025254 Bacteria 91940
68 Ga0209758_1003107 3300025297 Bacteria 15706
69 Ga0207426_1000845 3300025302 Bacteria 32310
70 Ga0207426_1009715 3300025302 Bacteria 3783
71 Ga0207710_10037328 3300025900 Bacteria 2145
72 Ga0207680_10000415 3300025903 Bacteria 20318
73 Ga0207647_10023455 3300025904 Bacteria 4080
74 Ga0207671_10007785 3300025914 Bacteria 9225
75 Ga0207650_10165380 3300025925 Unclassified 1755
76 Ga0207689_10002909 3300025942 Bacteria 15810
77 Ga0207712_10046415 3300025961 Bacteria 3012
78 Ga0207677_10077297 3300026023 Bacteria 2373
79 Ga0207641_10000013 3300026088 Bacteria 341378
80 Ga0207641_10000530 3300026088 Bacteria 42749
81 Ga0207676_10006514 3300026095 Bacteria 8255
82 Ga0207675_100020754 3300026118 Bacteria 6125
83 Ga0268264_10002522 3300028381 Bacteria 16094
84 Ga0268264_10160802 3300028381 Bacteria 2023
85 Ga0307515_10000001 3300028794 Bacteria 4259510
86 Ga0307515_10000071 3300028794 Bacteria 238152
87 Ga0307515_10002489 3300028794 Bacteria 39983
88 Ga0307515_10031352 3300028794 Bacteria 8870
89 Ga0316176_1038775 3300030732 Bacteria 12186
90 Ga0307509_10024544 3300031507 Bacteria 6748
91 Ga0307408_100000536 3300031548 Bacteria 32722
92 Ga0307408_100001503 3300031548 Bacteria 17317
93 Ga0307410_10023486 3300031852 Bacteria 3834
94 Ga0307407_10041482 3300031903 Bacteria 2574
95 Ga0307412_10000009 3300031911 Bacteria 445987
96 Ga0307412_10002911 3300031911 Bacteria 9492
97 Ga0307409_100011925 3300031995 Bacteria 5508
98 Ga0307409_100175810 3300031995 Bacteria 1889
99 Ga0307416_100036168 3300032002 Unclassified 3783
100 Ga0307414_10027674 3300032004 Bacteria 3667
101 Ga0307414_10074250 3300032004 Bacteria 2463
102 Ga0307411_10010813 3300032005 Bacteria 4888
103 Ga0395900_0045385 3300037418 Bacteria 4527
104 Ga0395905_0010126 3300037471 Bacteria 9190
105 Ga0439436_0034715 3300041404 Bacteria 1458
106 Ga0439439_0009338 3300041406 Bacteria 2331
107 Ga0451800_1307798 3300041459 Bacteria 1814
108 Ga0451853_1350114 3300041512 Bacteria 1473
109 Ga0439457_004366 3300042014 Bacteria 3692
110 Ga0450893_0013244 3300042532 Bacteria 1374
111 Ga0466972_0014198 3300044658 Bacteria 3992
112 Ga0453683_0000800 3300044673 Bacteria 30854
113 Ga0466960_0016991 3300044901 Bacteria 3166
114 Ga0495627_013053 3300046453 Bacteria 2931
115 Ga0495610_0000096 3300046512 Bacteria 102012
116 Ga0495686_0053681 3300047472 Bacteria 2525
117 Ga0496121_0000007 3300048924 Bacteria 942516
118 Ga0501047_0290929 3300049581 Bacteria 1477
119 Ga0501219_000047 3300049703 Bacteria 19832
120 Ga0501225_0000355 3300049705 Bacteria 14441
121 Ga0501284_00011 3300050005 Bacteria 131008
122 nmdc:mga05p37_77433_c1 3300050507 Bacteria 4094
123 nmdc:mga0qj67_204744_c1 3300050509 Unclassified 1603
124 Ga0500644_0000694 3300053088 Bacteria 12056
125 Ga0500583_0027199 3300053092 Bacteria 2467
126 Ga0500652_000787 3300053131 Bacteria 10640
127 Ga0500568_0045263 3300053139 Bacteria 1752
128 Ga0500589_046768 3300053147 Bacteria 2015

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300014326 Ga0157380_10057018 Ga0157380_100570183 355
2 3300044673 Ga0453683_0000800 Ga0453683_0000800_14959_16044 358
3 3300005719 Ga0068861_100021148 Ga0068861_1000211482 359
4 3300026118 Ga0207675_100020754 Ga0207675_1000207543 359
5 3300013307 Ga0157372_10016629 Ga0157372_100166292 362
6 iso_pu_bacteria 2818991442 2819577435 362
7 iso_pu_bacteria 2821136567 2821139545 362
8 iso_pu_bacteria 2896317667 2896321353 362
9 iso_pu_bacteria 2904467357 2904471821 362
10 iso_pu_bacteria 2929177148 2929181557 362
11 iso_pu_bacteria 2929921140 2929921352 362
12 iso_pu_bacteria 2945977869 2945983971 362
13 iso_pu_bacteria 2946013367 2946016636 362
14 iso_pu_bacteria 2887375801 2887377186 363
15 iso_pu_bacteria 2890737413 2890737676 363
16 iso_pu_bacteria 3003233435 3003234225 363
17 3300030732 Ga0316176_1038775 Ga0316176_10387752 365
18 3300032004 Ga0307414_10074250 Ga0307414_100742501 365
19 3300002738 JGI25154J39366_1000005 JGI25154J39366_1000005193 366
20 3300003215 JGI25153J46596_10001004 JGI25153J46596_100010045 366
21 3300003320 rootH2_10014542 rootH2_1001454215 366
22 3300003322 rootL2_10028676 rootL2_100286764 366
23 3300003323 rootH1_10009750 rootH1_100097505 366
24 3300005262 Ga0065165_1003976 Ga0065165_10039764 366
25 3300015265 Ga0182005_1000216 Ga0182005_100021619 366
26 3300025208 Ga0209436_100527 Ga0209436_1005276 366
27 3300025246 Ga0209646_1000017 Ga0209646_1000017208 366
28 3300025250 Ga0209026_1000538 Ga0209026_10005385 366
29 3300025297 Ga0209758_1003107 Ga0209758_10031075 366
30 3300025302 Ga0207426_1000845 Ga0207426_10008452 366
31 3300025302 Ga0207426_1009715 Ga0207426_10097152 366
32 3300044658 Ga0466972_0014198 Ga0466972_0014198_386_1489 366
33 3300046453 Ga0495627_013053 Ga0495627_013053_547_1653 366
34 3300048924 Ga0496121_0000007 Ga0496121_0000007_122583_123686 366
35 3300053088 Ga0500644_0000694 Ga0500644_0000694_1792_2895 366
36 3300053131 Ga0500652_000787 Ga0500652_000787_4685_5788 366
37 iso_pu_bacteria 8003151029 8003152630 366
38 iso_pu_bacteria 2945997725 2946001367 369
39 iso_pu_bacteria 2842722452 2842725859 370
40 iso_pu_bacteria 2954016120 2954018308 370
41 3300003761 Ga0055535_1002281 Ga0055535_10022812 371
42 3300025242 Ga0209258_100036 Ga0209258_10003618 371
43 3300025254 Ga0209148_1000230 Ga0209148_100023045 371
44 3300053092 Ga0500583_0027199 Ga0500583_0027199_557_1672 371
45 3300002459 JGI24751J29686_10011223 JGI24751J29686_100112232 373
46 3300006237 Ga0097621_100167058 Ga0097621_1001670582 373
47 3300006358 Ga0068871_100112253 Ga0068871_1001122532 373
48 3300013297 Ga0157378_10104854 Ga0157378_101048541 373
49 3300013306 Ga0163162_10212877 Ga0163162_102128772 373
50 3300013308 Ga0157375_10284875 Ga0157375_102848752 373
51 3300031548 Ga0307408_100000536 Ga0307408_1000005367 373
52 3300031548 Ga0307408_100001503 Ga0307408_1000015037 373
53 3300031911 Ga0307412_10002911 Ga0307412_100029114 373
54 3300032002 Ga0307416_100036168 Ga0307416_1000361682 373
55 3300046512 Ga0495610_0000096 Ga0495610_0000096_34952_36076 373
56 3300047472 Ga0495686_0053681 Ga0495686_0053681_815_1942 373
57 3300009094 Ga0111539_10398955 Ga0111539_103989552 374
58 3300013105 Ga0157369_10000004 Ga0157369_10000004185 374
59 3300015262 Ga0182007_10000027 Ga0182007_10000027120 374
60 3300006846 Ga0075430_100011048 Ga0075430_1000110482 375
61 iso_pu_bacteria 2738541278 2738724392 375
62 3300031995 Ga0307409_100011925 Ga0307409_1000119253 376
63 3300009174 Ga0105241_10105934 Ga0105241_101059342 377
64 3300009545 Ga0105237_10005050 Ga0105237_100050503 377
65 3300010375 Ga0105239_10033215 Ga0105239_100332154 377
66 3300028794 Ga0307515_10002489 Ga0307515_1000248931 377
67 iso_pu_bacteria 2852627209 2852630746 377
68 iso_pu_bacteria 2919186247 2919188917 377
69 iso_pu_bacteria 2939664404 2939666928 377
70 3300005331 Ga0070670_100024909 Ga0070670_1000249092 378
71 3300005471 Ga0070698_100048581 Ga0070698_1000485813 378
72 3300006844 Ga0075428_100125720 Ga0075428_1001257203 378
73 3300009094 Ga0111539_10310317 Ga0111539_103103172 378
74 3300009147 Ga0114129_10062313 Ga0114129_100623133 378
75 3300009553 Ga0105249_10015072 Ga0105249_100150723 378
76 3300013307 Ga0157372_10013725 Ga0157372_100137256 378
77 3300025904 Ga0207647_10023455 Ga0207647_100234552 378
78 3300028794 Ga0307515_10000001 Ga0307515_100000013004 378
79 3300005331 Ga0070670_100072448 Ga0070670_1000724482 379
80 3300005331 Ga0070670_100189557 Ga0070670_1001895572 379
81 3300005355 Ga0070671_100020037 Ga0070671_1000200374 379
82 3300009147 Ga0114129_10097166 Ga0114129_100971663 379
83 3300013297 Ga0157378_10010687 Ga0157378_100106873 379
84 3300025925 Ga0207650_10165380 Ga0207650_101653802 379
85 3300026023 Ga0207677_10077297 Ga0207677_100772973 379
86 3300028794 Ga0307515_10000071 Ga0307515_1000007136 379
87 3300031507 Ga0307509_10024544 Ga0307509_100245442 379
88 3300041404 Ga0439436_0034715 Ga0439436_0034715_273_1418 379
89 3300041406 Ga0439439_0009338 Ga0439439_0009338_553_1698 379
90 3300041459 Ga0451800_1307798 Ga0451800_1307798_296_1441 379
91 3300041512 Ga0451853_1350114 Ga0451853_1350114_136_1281 379
92 3300042014 Ga0439457_004366 Ga0439457_004366_2044_3189 379
93 3300044901 Ga0466960_0016991 Ga0466960_0016991_1309_2451 379
94 3300049581 Ga0501047_0290929 Ga0501047_0290929_62_1207 379
95 3300049703 Ga0501219_000047 Ga0501219_000047_15272_16414 379
96 3300049705 Ga0501225_0000355 Ga0501225_0000355_5068_6213 379
97 3300050005 Ga0501284_00011 Ga0501284_00011_106819_107961 379
98 3300050507 nmdc:mga05p37_77433_c1 nmdc:mga05p37_77433_c1_355_1500 379
99 3300053147 Ga0500589_046768 Ga0500589_046768_103_1248 379
100 3300005334 Ga0068869_100010701 Ga0068869_1000107014 380
101 3300005335 Ga0070666_10000728 Ga0070666_1000072812 380
102 3300005617 Ga0068859_100000030 Ga0068859_10000003035 380
103 3300005617 Ga0068859_100013550 Ga0068859_1000135506 380
104 3300005618 Ga0068864_100008202 Ga0068864_1000082025 380
105 3300005618 Ga0068864_100249285 Ga0068864_1002492851 380
106 3300005841 Ga0068863_100002325 Ga0068863_10000232510 380
107 3300005841 Ga0068863_100006377 Ga0068863_1000063774 380
108 3300005843 Ga0068860_100003675 Ga0068860_1000036757 380
109 3300005843 Ga0068860_100024701 Ga0068860_1000247011 380
110 3300006237 Ga0097621_100003096 Ga0097621_1000030965 380
111 3300006931 Ga0097620_100000030 Ga0097620_100000030110 380
112 3300006931 Ga0097620_100013550 Ga0097620_1000135506 380
113 3300009101 Ga0105247_10075599 Ga0105247_100755992 380
114 3300009545 Ga0105237_10008035 Ga0105237_100080355 380
115 3300009553 Ga0105249_10359428 Ga0105249_103594281 380
116 3300010375 Ga0105239_10214648 Ga0105239_102146482 380
117 3300013306 Ga0163162_10000348 Ga0163162_1000034817 380
118 3300013307 Ga0157372_10410580 Ga0157372_104105801 380
119 3300014968 Ga0157379_10154104 Ga0157379_101541042 380
120 3300014969 Ga0157376_10013959 Ga0157376_100139594 380
121 3300014969 Ga0157376_10106934 Ga0157376_101069342 380
122 3300025900 Ga0207710_10037328 Ga0207710_100373282 380
123 3300025903 Ga0207680_10000415 Ga0207680_1000041512 380
124 3300025914 Ga0207671_10007785 Ga0207671_100077854 380
125 3300025942 Ga0207689_10002909 Ga0207689_100029097 380
126 3300025961 Ga0207712_10046415 Ga0207712_100464154 380
127 3300026088 Ga0207641_10000013 Ga0207641_1000001358 380
128 3300026088 Ga0207641_10000530 Ga0207641_1000053010 380
129 3300026095 Ga0207676_10006514 Ga0207676_100065144 380
130 3300028381 Ga0268264_10002522 Ga0268264_100025221 380
131 3300028381 Ga0268264_10160802 Ga0268264_101608022 380
132 3300031852 Ga0307410_10023486 Ga0307410_100234862 380
133 3300031903 Ga0307407_10041482 Ga0307407_100414822 380
134 3300031995 Ga0307409_100175810 Ga0307409_1001758102 380
135 3300032005 Ga0307411_10010813 Ga0307411_100108133 380
136 3300037418 Ga0395900_0045385 Ga0395900_0045385_1209_2369 380
137 3300037471 Ga0395905_0010126 Ga0395905_0010126_1826_2986 380
138 3300042532 Ga0450893_0013244 Ga0450893_0013244_185_1336 380
139 3300050509 nmdc:mga0qj67_204744_c1 nmdc:mga0qj67_204744_c1_324_1475 380
140 2162886007 SwRhRL2b_contig_1482229 SwRhRL2b_0127.00001580 381
141 3300005289 Ga0065704_10000482 Ga0065704_100004825 381
142 3300013100 Ga0157373_10000109 Ga0157373_1000010944 381
143 3300013102 Ga0157371_10001595 Ga0157371_100015951 381
144 3300028794 Ga0307515_10031352 Ga0307515_100313524 381
145 3300031911 Ga0307412_10000009 Ga0307412_10000009183 381
146 3300032004 Ga0307414_10027674 Ga0307414_100276742 381
147 3300053139 Ga0500568_0045263 Ga0500568_0045263_521_1666 381

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07470

Glyco_hydro_88

Glycosyl Hydrolase Family 88

91

427

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qwt-assembly1.cif.gz_A the crystal structure of a possible member of gh105 family from salmonella enterica subsp. enterica serovar paratyphi a str. atcc 9150 0.8416 34 381
2gh4-assembly1.cif.gz_A yter/d143n/dgala-rha 0.8407 41 380
3pmm-assembly1.cif.gz_A the crystal structure of a possible member of gh105 family from klebsiella pneumoniae subsp. pneumoniae mgh 78578 0.8404 34 381
1nc5-assembly1.cif.gz_A structure of protein of unknown function of yter from bacillus subtilis 0.8393 41 380
4wu0-assembly2.cif.gz_B structural analysis of c. acetobutylicum atcc 824 glycoside hydrolase from family 105 0.8332 46 379
ID Description Score Start End Superfamily
2gh4A00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.8407 41 380 1.50.10.10
4wu0A00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.8317 46 379 1.50.10.10
4xuvA00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.79 41 381 1.50.10.10
2gh4A00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.7888 41 380 1.50.10.10
3k11A00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.7851 33 379 1.50.10.10
ID Description Score Start End GO Terms
AF-A0A353RH00-F1-model_v4 Glycosyl hydrolase 0.9936 212 381 GO:0005975
GO:0016787
AF-A0A3N5ZFU8-F1-model_v4 Glycosyl hydrolase 0.993 69 381 GO:0005975
GO:0016787
AF-A0A4Q5YQF4-F1-model_v4 Glycosyl hydrolase 0.9905 232 381 GO:0005975
GO:0016787
AF-A0A415M786-F1-model_v4 Glycosyl hydrolase 0.9863 33 381 GO:0005975
GO:0016787
AF-A0A6I7MME3-F1-model_v4 deleted 0.9854 33 381

Feature Viewer

pLDDT pTM Quality
91.51 0.88 High
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Predicted Structure (AlphaFold2)

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