F199028

General Info

Members Datasets Scaffolds Average Seq Length
146 132 90 450

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8054913762|8054915777
Length 493
Sequence TPPRPSAAAIPPRPSGAGVAPRPSAAGVAPRSRAVGPADAEVIRADAFAVALPVGRWSTDPAVVDAHRLDRSGWLPDGRPLGVAFAREVSDVQAVLRVAVARGVPVTVRGAGTGLAGGAAAGPGGVVLDLAGMNSIRELSVDDAVAVVEPGVITADLDAAAREVGLCYAPDPASAAISTIGGNIATNAGGLRCAKYGVTRESVLGLDVVLADGELISTGRRTVKGVAGYDLTGLFVGSEGTLGVVVGATVRLRPAPRATVTLAAYFDTVAAAVDAVTALGAAGIVPAVAELLDARTVRAVDAATGSDLAAHGEVFLLVQTDGSGAVEEADAAEAVLAGRARLVRRSADAATAETLLAARRAALPALERLGRVLIEDIAVPRGRLAQAVARVTEIGADTGVEIFTLAHAADGNLHPIIVVDPSLPEIPPQAWAAAEQIFALALELGGTVTGEHGVGVLKRRWLATELGSRSHDLQRQLRRVFDPTGILNPGRAL

Samples

Sample ID Description Type Environment
1 2527291627 Frankia casuarinae Thr Isolate Nodule
2 2527291629 Frankia sp. BMG5.23 Isolate Nodule
3 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
4 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
5 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
6 2576861822 Frankia sp. CeD Isolate Nodule
7 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
8 2619618881 Frankia sp. ACN1ag Isolate Unclassified
9 2619619003 Frankia sp. CpI1-P Isolate Nodule
10 2626541554 Frankia sp. AvcI.1 Isolate Nodule
11 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
12 2684623036 Frankia sp. CgIM4 Isolate Nodule
13 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
14 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
15 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
16 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
17 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
18 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
19 2773857924 Frankia sp. CgIS1 Isolate Nodule
20 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
21 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
22 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
23 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
24 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
25 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
26 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
27 2891562705 Microbispora tritici MT50 Isolate Unclassified
28 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
29 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
30 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
31 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
32 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
33 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
34 2919069694 Microbacterium sp. 1154 Isolate Unclassified
35 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
36 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
37 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
38 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
39 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
40 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
41 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
42 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
43 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
44 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
45 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
46 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
47 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
48 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
49 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
52 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
53 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
54 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
55 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
56 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
57 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
70 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
71 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
72 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
79 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
80 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
83 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
84 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
89 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
90 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
91 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
92 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
93 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
97 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
101 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
102 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
103 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
104 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
107 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
108 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
109 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
110 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
111 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
112 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
113 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
114 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
115 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
116 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
117 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
118 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
119 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
120 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
121 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 637000116 Frankia casuarinae CcI3 Isolate Nodule
124 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
125 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
126 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
127 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
128 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
129 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
130 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
131 8054920844 Frankia tisae Agncl-8 Isolate Nodule
132 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 61.64
Metatranscriptomes 0
Isolates 38.36

Biome Distribution

Category Percentage (%)
Aerial Root 0.68
Bulb 0
Endosphere 9.59
Nodule 8.22
Rhizoplane 6.16
Rhizosphere 43.84
Stem 0
Stem Tuber 0
Unclassified 31.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10041621 3300003320 Bacteria 5873
2 Ga0070671_100008164 3300005355 Bacteria 8380
3 Ga0070665_100060685 3300005548 Bacteria 3790
4 Ga0068863_100000322 3300005841 Bacteria 48726
5 Ga0081455_10000045 3300005937 Bacteria 128603
6 Ga0070715_10035584 3300006163 Bacteria 2049
7 Ga0075369_10010003 3300006186 Bacteria 3703
8 Ga0105244_10001694 3300009036 Bacteria 17409
9 Ga0105247_10000056 3300009101 Bacteria 133965
10 Ga0105248_10010669 3300009177 Bacteria 10134
11 Ga0157370_10010574 3300013104 Bacteria 9717
12 Ga0157379_10007332 3300014968 Bacteria 9543
13 Ga0157379_10008832 3300014968 Bacteria 8789
14 Ga0209148_1002663 3300025254 Bacteria 5751
15 Ga0207655_1002482 3300025728 Bacteria 14933
16 Ga0207710_10000084 3300025900 Bacteria 133802
17 Ga0207644_10005312 3300025931 Bacteria 8406
18 Ga0207711_10008184 3300025941 Bacteria 8754
19 Ga0207668_10002055 3300025972 Bacteria 11727
20 Ga0207668_10172895 3300025972 Bacteria 1696
21 Ga0207641_10001474 3300026088 Bacteria 23090
22 Ga0268266_10008733 3300028379 Bacteria 8981
23 Ga0307517_10025234 3300028786 Bacteria 7280
24 Ga0307408_100128871 3300031548 Bacteria 1971
25 Ga0307408_100162801 3300031548 Bacteria 1773
26 Ga0307408_100182848 3300031548 Bacteria 1683
27 Ga0307508_10142963 3300031616 Bacteria 1996
28 Ga0307514_10090267 3300031649 Bacteria 2236
29 Ga0307413_10049346 3300031824 Bacteria 2522
30 Ga0307410_10012982 3300031852 Bacteria 4841
31 Ga0307410_10023362 3300031852 Bacteria 3842
32 Ga0307410_10041838 3300031852 Bacteria 3024
33 Ga0307406_10160050 3300031901 Bacteria 1617
34 Ga0307407_10031358 3300031903 Bacteria 2878
35 Ga0307409_100013703 3300031995 Bacteria 5234
36 Ga0307409_100043290 3300031995 Bacteria 3379
37 Ga0307416_100014446 3300032002 Bacteria 5414
38 Ga0307416_100089693 3300032002 Bacteria 2633
39 Ga0395898_0028640 3300037466 Bacteria 5581
40 Ga0439442_003304 3300042002 Bacteria 3187
41 Ga0439449_0028403 3300042007 Bacteria 2085
42 Ga0466961_0001966 3300044693 Bacteria 12798
43 Ga0466959_0087297 3300045049 Bacteria 2244
44 Ga0495592_0120455 3300046454 Bacteria 1846
45 Ga0495629_0011225 3300046459 Bacteria 6505
46 Ga0495643_0002361 3300046522 Bacteria 15129
47 Ga0495652_0021617 3300046529 Bacteria 5718
48 Ga0495646_0004064 3300046680 Bacteria 9180
49 Ga0495658_0070429 3300046683 Bacteria 2029
50 Ga0495670_0005061 3300046691 Bacteria 6487
51 Ga0495672_0009965 3300047320 Bacteria 6819
52 Ga0495685_000456 3300047447 Bacteria 12751
53 Ga0495681_0008332 3300047470 Bacteria 6510
54 Ga0495602_0191629 3300048088 Bacteria 1567
55 Ga0496100_0001894 3300048903 Bacteria 10493
56 Ga0496101_0001969 3300048904 Bacteria 12442
57 Ga0496102_0000020 3300048905 Bacteria 260823
58 Ga0496103_0000011 3300048906 Bacteria 304506
59 Ga0496104_0148079 3300048907 Bacteria 2254
60 Ga0496105_0022019 3300048908 Bacteria 5160
61 Ga0496111_0024607 3300048914 Bacteria 4242
62 Ga0496116_0000067 3300048919 Bacteria 260793
63 Ga0496117_0000170 3300048920 Bacteria 136272
64 Ga0496117_0001045 3300048920 Bacteria 42245
65 Ga0496118_0000076 3300048921 Bacteria 193263
66 Ga0496118_0001725 3300048921 Bacteria 31843
67 Ga0496119_0000237 3300048922 Bacteria 77727
68 Ga0496119_0001513 3300048922 Bacteria 27787
69 Ga0496120_0000838 3300048923 Bacteria 43809
70 Ga0496120_0005494 3300048923 Bacteria 10089
71 Ga0496121_0008868 3300048924 Bacteria 11702
72 Ga0496122_0092003 3300048925 Bacteria 2063
73 Ga0496123_0029844 3300048926 Bacteria 4004
74 Ga0496124_0000075 3300048927 Bacteria 218086
75 Ga0496124_0017311 3300048927 Bacteria 6795
76 Ga0496125_0043318 3300048928 Bacteria 3822
77 Ga0496126_0000080 3300048929 Bacteria 221672
78 nmdc:mga0sz30_10321_c1 3300050516 Bacteria 3579
79 Ga0495601_0001844 3300053077 Bacteria 11784
80 Ga0500560_014272 3300053107 Bacteria 2113
81 Ga0500569_000938 3300053109 Bacteria 5237
82 Ga0500628_004506 3300053129 Bacteria 2307
83 Ga0500652_003104 3300053131 Bacteria 5011
84 Ga0500559_0000104 3300053136 Bacteria 65891
85 Ga0500561_0001695 3300053137 Bacteria 3616
86 Ga0500573_0022875 3300053140 Bacteria 3588
87 Ga0500579_037826 3300053143 Bacteria 3054
88 Ga0500600_0007078 3300053149 Bacteria 6729
89 Ga0500616_0017709 3300053153 Bacteria 4039
90 Ga0500616_0026875 3300053153 Bacteria 3181

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045049 Ga0466959_0087297 Ga0466959_0087297_79_1233 382
2 3300046683 Ga0495658_0070429 Ga0495658_0070429_632_1948 400
3 3300009101 Ga0105247_10000056 Ga0105247_100000565 417
4 3300009177 Ga0105248_10010669 Ga0105248_100106696 417
5 3300014968 Ga0157379_10008832 Ga0157379_100088325 417
6 3300025900 Ga0207710_10000084 Ga0207710_10000084104 417
7 3300025941 Ga0207711_10008184 Ga0207711_100081844 417
8 3300048922 Ga0496119_0001513 Ga0496119_0001513_23985_25358 417
9 3300048923 Ga0496120_0000838 Ga0496120_0000838_8434_9807 417
10 3300053107 Ga0500560_014272 Ga0500560_014272_619_2019 420
11 3300053140 Ga0500573_0022875 Ga0500573_0022875_899_2299 420
12 3300047320 Ga0495672_0009965 Ga0495672_0009965_1644_2984 423
13 3300005841 Ga0068863_100000322 Ga0068863_10000032220 428
14 3300014968 Ga0157379_10007332 Ga0157379_100073322 428
15 3300026088 Ga0207641_10001474 Ga0207641_1000147417 428
16 3300031548 Ga0307408_100162801 Ga0307408_1001628012 428
17 3300031852 Ga0307410_10041838 Ga0307410_100418382 428
18 3300031901 Ga0307406_10160050 Ga0307406_101600501 428
19 3300031995 Ga0307409_100013703 Ga0307409_1000137031 428
20 3300032002 Ga0307416_100014446 Ga0307416_1000144462 428
21 3300048903 Ga0496100_0001894 Ga0496100_0001894_7748_9058 428
22 3300048905 Ga0496102_0000020 Ga0496102_0000020_142727_144037 428
23 3300048906 Ga0496103_0000011 Ga0496103_0000011_253970_255280 428
24 3300048907 Ga0496104_0148079 Ga0496104_0148079_662_1972 428
25 3300048908 Ga0496105_0022019 Ga0496105_0022019_1203_2513 428
26 3300048919 Ga0496116_0000067 Ga0496116_0000067_142712_144022 428
27 3300048920 Ga0496117_0000170 Ga0496117_0000170_18147_19457 428
28 3300048921 Ga0496118_0000076 Ga0496118_0000076_142701_144011 428
29 3300048922 Ga0496119_0000237 Ga0496119_0000237_51183_52493 428
30 3300048923 Ga0496120_0005494 Ga0496120_0005494_4066_5376 428
31 3300048927 Ga0496124_0017311 Ga0496124_0017311_5154_6464 428
32 3300048928 Ga0496125_0043318 Ga0496125_0043318_1072_2382 428
33 3300048929 Ga0496126_0000080 Ga0496126_0000080_77589_78899 428
34 3300005355 Ga0070671_100008164 Ga0070671_1000081645 429
35 3300005548 Ga0070665_100060685 Ga0070665_1000606851 429
36 3300006186 Ga0075369_10010003 Ga0075369_100100032 429
37 3300025931 Ga0207644_10005312 Ga0207644_100053123 429
38 3300025972 Ga0207668_10172895 Ga0207668_101728952 429
39 3300028379 Ga0268266_10008733 Ga0268266_100087335 429
40 3300048904 Ga0496101_0001969 Ga0496101_0001969_9507_10817 429
41 3300048924 Ga0496121_0008868 Ga0496121_0008868_1745_3055 429
42 3300050516 nmdc:mga0sz30_10321_c1 nmdc:mga0sz30_10321_c1_1558_2913 429
43 iso_pu_bacteria 2974294766 2974296207 430
44 iso_pu_bacteria 2974324384 2974327558 430
45 3300031548 Ga0307408_100128871 Ga0307408_1001288711 433
46 3300031824 Ga0307413_10049346 Ga0307413_100493462 433
47 3300031852 Ga0307410_10023362 Ga0307410_100233623 433
48 3300053153 Ga0500616_0017709 Ga0500616_0017709_2233_3624 437
49 3300053136 Ga0500559_0000104 Ga0500559_0000104_41192_42565 439
50 3300044693 Ga0466961_0001966 Ga0466961_0001966_9635_10990 441
51 iso_pu_bacteria 8047710418 8047710696 442
52 3300006163 Ga0070715_10035584 Ga0070715_100355842 443
53 iso_pu_bacteria 2905926851 2905929311 443
54 iso_pu_bacteria 2687453743 2689990183 446
55 iso_pu_bacteria 2857481737 2857481858 446
56 iso_pu_bacteria 8048127548 8048136848 446
57 3300013104 Ga0157370_10010574 Ga0157370_100105747 447
58 iso_pu_bacteria 2527291627 2528203256 447
59 iso_pu_bacteria 2527291629 2528214391 447
60 iso_pu_bacteria 2546825537 2546947900 447
61 iso_pu_bacteria 2576861822 2579749759 447
62 iso_pu_bacteria 2684623036 2686541615 447
63 iso_pu_bacteria 2773857924 2774864373 447
64 iso_pu_bacteria 3002998708 3003001296 447
65 iso_pu_bacteria 637000116 637879744 447
66 iso_pu_bacteria 8053945823 8053953469 447
67 3300028786 Ga0307517_10025234 Ga0307517_100252343 448
68 3300031649 Ga0307514_10090267 Ga0307514_100902672 448
69 3300046459 Ga0495629_0011225 Ga0495629_0011225_917_2317 448
70 3300046522 Ga0495643_0002361 Ga0495643_0002361_5569_6969 448
71 3300046691 Ga0495670_0005061 Ga0495670_0005061_1918_3318 448
72 3300047447 Ga0495685_000456 Ga0495685_000456_3770_5170 448
73 3300047470 Ga0495681_0008332 Ga0495681_0008332_4649_6049 448
74 3300053109 Ga0500569_000938 Ga0500569_000938_451_1851 448
75 3300053129 Ga0500628_004506 Ga0500628_004506_194_1594 448
76 3300053131 Ga0500652_003104 Ga0500652_003104_2684_4084 448
77 3300053137 Ga0500561_0001695 Ga0500561_0001695_1174_2574 448
78 3300053143 Ga0500579_037826 Ga0500579_037826_1030_2430 448
79 3300053149 Ga0500600_0007078 Ga0500600_0007078_3767_5167 448
80 3300053153 Ga0500616_0026875 Ga0500616_0026875_425_1825 448
81 3300005937 Ga0081455_10000045 Ga0081455_10000045104 449
82 3300025972 Ga0207668_10002055 Ga0207668_100020555 449
83 3300031852 Ga0307410_10012982 Ga0307410_100129824 449
84 3300048914 Ga0496111_0024607 Ga0496111_0024607_2481_3884 449
85 iso_pu_bacteria 2537561592 2537900792 449
86 3300031616 Ga0307508_10142963 Ga0307508_101429631 450
87 3300048925 Ga0496122_0092003 Ga0496122_0092003_368_1723 450
88 3300048926 Ga0496123_0029844 Ga0496123_0029844_1569_2924 450
89 iso_pu_bacteria 2767802112 2768647601 450
90 iso_pu_bacteria 2856741275 2856744100 450
91 iso_pu_bacteria 2891562705 2891564333 450
92 3300037466 Ga0395898_0028640 Ga0395898_0028640_3411_4766 451
93 iso_pu_bacteria 2773857762 2774391773 452
94 iso_pu_bacteria 2808606439 2809197427 452
95 iso_pu_bacteria 2811994878 2812352329 452
96 iso_pu_bacteria 2867346516 2867352208 452
97 iso_pu_bacteria 2891968417 2891970017 452
98 3300025254 Ga0209148_1002663 Ga0209148_10026632 453
99 3300031548 Ga0307408_100182848 Ga0307408_1001828481 453
100 3300031995 Ga0307409_100043290 Ga0307409_1000432903 453
101 3300032002 Ga0307416_100089693 Ga0307416_1000896933 453
102 iso_pu_bacteria 2684623035 2686538590 453
103 iso_pu_bacteria 2895880812 2895887364 453
104 iso_pu_bacteria 2984542743 2984544192 453
105 3300031903 Ga0307407_10031358 Ga0307407_100313583 454
106 3300046454 Ga0495592_0120455 Ga0495592_0120455_444_1808 454
107 3300046529 Ga0495652_0021617 Ga0495652_0021617_258_1622 454
108 3300046680 Ga0495646_0004064 Ga0495646_0004064_219_1583 454
109 3300048088 Ga0495602_0191629 Ga0495602_0191629_130_1494 454
110 3300053077 Ga0495601_0001844 Ga0495601_0001844_10337_11701 454
111 iso_pu_bacteria 2751185788 2753300470 454
112 iso_pu_bacteria 2773857758 2774379237 454
113 iso_pu_bacteria 2904509784 2904510749 454
114 iso_pu_bacteria 2908678064 2908679726 454
115 iso_pu_bacteria 2919069694 2919070387 454
116 iso_pu_bacteria 2977228692 2977229938 454
117 iso_pu_bacteria 2977236895 2977238024 454
118 iso_pu_bacteria 2977264416 2977265197 454
119 3300009036 Ga0105244_10001694 Ga0105244_100016943 455
120 3300025728 Ga0207655_1002482 Ga0207655_100248213 455
121 3300042002 Ga0439442_003304 Ga0439442_003304_1380_2789 455
122 3300042007 Ga0439449_0028403 Ga0439449_0028403_218_1630 455
123 3300048920 Ga0496117_0001045 Ga0496117_0001045_17017_18432 455
124 3300048921 Ga0496118_0001725 Ga0496118_0001725_6425_7840 455
125 3300048927 Ga0496124_0000075 Ga0496124_0000075_145084_146499 455
126 iso_pu_bacteria 2558860112 2558907333 455
127 iso_pu_bacteria 2773857763 2774398754 455
128 iso_pu_bacteria 2852677369 2852680419 455
129 iso_pu_bacteria 2870622029 2870623196 455
130 iso_pu_bacteria 2904776348 2904779499 455
131 iso_pu_bacteria 2919538618 2919541754 455
132 iso_pu_bacteria 2928104781 2928107630 455
133 iso_pu_bacteria 2945920336 2945920580 455
134 iso_pu_bacteria 2946037020 2946039110 455
135 iso_pu_bacteria 2974302888 2974302898 455
136 3300003320 rootH2_10041621 rootH2_100416214 457
137 iso_pu_bacteria 2579778521 2579857809 457
138 iso_pu_bacteria 2619618881 2619855633 457
139 iso_pu_bacteria 2619619003 2620353504 457
140 iso_pu_bacteria 2626541554 2626635051 457
141 iso_pu_bacteria 8047893842 8047902679 457
142 iso_pu_bacteria 8048369669 8048370477 457
143 iso_pu_bacteria 8048379754 8048388945 457
144 iso_pu_bacteria 8054913762 8054915777 457
145 iso_pu_bacteria 8054920844 8054926545 457
146 iso_pu_bacteria 8055157932 8055160772 457

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01565

FAD_binding_4

FAD binding domain

80

219

0.97

PF02913

FAD-oxidase_C

FAD linked oxidases, C-terminal domain

255

492

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
8jdp-assembly1.cif.gz_A crystal structure of h405a mldhd in complex with d-2-hydroxyisovaleric acid 0.9254 7 457
8jde-assembly1.cif.gz_A crystal structure of mldhd in complex with d-lactate 0.9242 6 457
8jds-assembly1.cif.gz_A crystal structure of mldhd in complex with pyruvate 0.9232 7 457
8jdt-assembly1.cif.gz_A crystal structure of mldhd in complex with 2-ketobutanoic acid 0.9206 7 457
8jdo-assembly1.cif.gz_A crystal structure of h405a mldhd in complex with d-2-hydroxyhexanoic acid 0.9189 7 457
ID Description Score Start End Superfamily
af_P0AEP9_110_230_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.973 98 219 3.30.465.10
af_P0AEP9_110_230_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9652 98 219 3.30.465.10
af_Q11061_15_234_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9585 20 219 3.30.465.10
af_K7K4A7_263_384_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9515 98 219 3.30.465.10
3pm9F02 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9485 98 219 3.30.465.10
ID Description Score Start End GO Terms
AF-A0A354XN31-F1-model_v4 FAD-binding oxidoreductase 0.9684 95 215 GO:0071949
AF-A0A3D1UBQ6-F1-model_v4 deleted 0.964 95 222
AF-A0A246F2T0-F1-model_v4 FAD-binding oxidoreductase 0.964 98 221 GO:0071949
AF-A0A4D4LNT1-F1-model_v4 FAD-binding PCMH-type domain-containing protein 0.9604 116 457 GO:0003824
GO:0071949
AF-A0A4D4LNT1-F1-model_v4 FAD-binding PCMH-type domain-containing protein 0.9576 116 457 GO:0003824
GO:0071949

Feature Viewer

pLDDT pTM Quality
90.63 0.89 High
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Predicted Structure (AlphaFold2)

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