F198430

General Info

Members Datasets Scaffolds Average Seq Length
146 60 292 484

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0000711|Ga0495580_0000711_19578_21161
Length 527
Sequence VFPEHRRLLAQYVFNPNRTLNGLVKENIMRSKLSRSRWVAHSIATFLTATLLFAMCEAQDRDRSTAPQATSPAENRGAKAPQMRTPDTLVQLNSALVGLADKVSQGVVQILVTGYGPLEDNSRTETAFIARQRAIGSGVIVDPSGYVMTNAHVVEGARRIRIVLPVPSSESATLEPEGKRRILEAKMVGTHQETDLALLKVEGKDLPALPLEASRRVRQGQLVFAIGSPEGLQNTITMGVISSVARQPDPNKPMVYIQTDAPINPGNSGGPLVDMDGNVVGINTFILSGSGGSEGIGFAIPTRIVRFVYESLRKYGHVHRSEIEAGAQTITPTLAAGLGLKRSWGVLIADVKPGGPAEAAGLKVGDIVLAVDDRSIDTLPAFMGSMYLHPVDRVLKLDVLRDAGKKTLNIAVLQEKHPMDQLLDLADPQGNLVPQLAILGIGVDDRVRSMVGELRSPGGVLVLGRSADLLGPDIGLATGDVIHSINNRPVDTVDNLRSALSQLKSGDSVALQIERTGKLQFVSFELD

Samples

Sample ID Description Type Environment
1 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
2 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
16 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
21 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
28 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
29 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
30 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
42 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
43 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
44 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
45 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
46 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
47 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
48 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
49 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
50 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
51 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
52 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
53 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
54 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
55 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
56 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
57 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
58 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
59 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
60 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.89
Metatranscriptomes 4.11
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.74
Rhizosphere 96.58
Stem 0
Stem Tuber 0
Unclassified 3.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495580_0000711 3300046472 Bacteria 28413
2 Ga0070709_10000938 3300005434 Bacteria 16199
3 Ga0070709_10032567 3300005434 Bacteria 3144
4 Ga0070709_10042344 3300005434 Bacteria 2812
5 Ga0070714_100055368 3300005435 Bacteria 3389
6 Ga0070713_100000339 3300005436 Bacteria 30420
7 Ga0070713_100001895 3300005436 Bacteria 13483
8 Ga0070713_100078170 3300005436 Bacteria 2816
9 Ga0070713_100151313 3300005436 Bacteria 2064
10 Ga0070713_100244546 3300005436 Bacteria 1635
11 Ga0070710_10004186 3300005437 Bacteria 6840
12 Ga0070710_10012161 3300005437 Unclassified 4266
13 Ga0070711_100015656 3300005439 Bacteria 4801
14 Ga0070711_100017668 3300005439 Bacteria 4544
15 Ga0070711_100020731 3300005439 Bacteria 4241
16 Ga0070708_100000365 3300005445 Bacteria 34262
17 Ga0070708_100000372 3300005445 Bacteria 33949
18 Ga0070708_100009996 3300005445 Bacteria 7677
19 Ga0070708_100012870 3300005445 Bacteria 6836
20 Ga0070708_100033574 3300005445 Bacteria 4458
21 Ga0070708_100086375 3300005445 Bacteria 2849
22 Ga0070706_100003797 3300005467 Bacteria 14748
23 Ga0070706_100013683 3300005467 Bacteria 7502
24 Ga0070706_100019106 3300005467 Bacteria 6323
25 Ga0070706_100019261 3300005467 Bacteria 6295
26 Ga0070706_100025601 3300005467 Bacteria 5431
27 Ga0070706_100056910 3300005467 Bacteria 3608
28 Ga0070706_100081123 3300005467 Unclassified 3004
29 Ga0070707_100004759 3300005468 Bacteria 12709
30 Ga0070707_100024499 3300005468 Bacteria 5716
31 Ga0070707_100035494 3300005468 Bacteria 4756
32 Ga0070698_100000725 3300005471 Bacteria 35382
33 Ga0070698_100003025 3300005471 Bacteria 18536
34 Ga0070698_100010782 3300005471 Bacteria 9723
35 Ga0070698_100049772 3300005471 Bacteria 4276
36 Ga0070698_100051248 3300005471 Bacteria 4205
37 Ga0070699_100001645 3300005518 Bacteria 20397
38 Ga0070699_100009511 3300005518 Bacteria 8421
39 Ga0070699_100024581 3300005518 Bacteria 5193
40 Ga0070699_100110744 3300005518 Bacteria 2410
41 Ga0070699_100165238 3300005518 Bacteria 1960
42 Ga0070697_100000638 3300005536 Bacteria 26584
43 Ga0070697_100001970 3300005536 Bacteria 15701
44 Ga0070697_100003042 3300005536 Bacteria 12875
45 Ga0070697_100007313 3300005536 Bacteria 8588
46 Ga0070697_100017549 3300005536 Bacteria 5633
47 Ga0070697_100043054 3300005536 Bacteria 3655
48 Ga0070697_100083662 3300005536 Bacteria 2631
49 Ga0070697_100114191 3300005536 Bacteria 2253
50 Ga0070695_100008605 3300005545 Bacteria 6061
51 Ga0070717_10001287 3300006028 Bacteria 17150
52 Ga0070717_10013873 3300006028 Bacteria 6189
53 Ga0070717_10034414 3300006028 Bacteria 4095
54 Ga0070717_10037860 3300006028 Bacteria 3918
55 Ga0070717_10038236 3300006028 Bacteria 3900
56 Ga0070717_10050770 3300006028 Bacteria 3411
57 Ga0070716_100000056 3300006173 Bacteria 43733
58 Ga0070716_100000373 3300006173 Bacteria 18388
59 Ga0070716_100034082 3300006173 Bacteria 2789
60 Ga0070716_100055533 3300006173 Bacteria 2267
61 Ga0070712_100000733 3300006175 Bacteria 19357
62 Ga0070712_100001023 3300006175 Bacteria 16868
63 Ga0070712_100005996 3300006175 Bacteria 7518
64 Ga0070712_100029129 3300006175 Bacteria 3700
65 Ga0070712_100053036 3300006175 Bacteria 2830
66 Ga0097621_100068462 3300006237 Bacteria 2928
67 Ga0075433_10073564 3300006852 Unclassified 3006
68 Ga0075433_10076706 3300006852 Bacteria 2943
69 Ga0075434_100086492 3300006871 Bacteria 3135
70 Ga0075435_100083110 3300007076 Bacteria 2632
71 Ga0099794_10000235 3300007265 Bacteria 19846
72 Ga0099794_10001944 3300007265 Bacteria 7442
73 Ga0099794_10029086 3300007265 Bacteria 2573
74 Ga0105245_10113393 3300009098 Bacteria 2524
75 Ga0114129_10043777 3300009147 Bacteria 6299
76 Ga0114129_10056908 3300009147 Bacteria 5474
77 Ga0114129_10080489 3300009147 Bacteria 4527
78 Ga0105238_10135342 3300009551 Bacteria 2442
79 Ga0157374_10027224 3300013296 Bacteria 5154
80 Ga0163162_10081360 3300013306 Bacteria 3309
81 Ga0157379_10146461 3300014968 Bacteria 2130
82 Ga0157376_10112295 3300014969 Bacteria 2401
83 Ga0228598_1000047 3300024227 Bacteria 17325
84 Ga0228598_1000437 3300024227 Bacteria 8493
85 Ga0228598_1005385 3300024227 Bacteria 2675
86 Ga0207692_10010240 3300025898 Bacteria 3943
87 Ga0207692_10014780 3300025898 Bacteria 3418
88 Ga0207692_10045450 3300025898 Bacteria 2197
89 Ga0207699_10002222 3300025906 Bacteria 9158
90 Ga0207684_10000343 3300025910 Bacteria 64775
91 Ga0207684_10000975 3300025910 Bacteria 32051
92 Ga0207684_10002892 3300025910 Bacteria 17013
93 Ga0207684_10029472 3300025910 Bacteria 4674
94 Ga0207684_10111968 3300025910 Unclassified 2336
95 Ga0207684_10154020 3300025910 Bacteria 1978
96 Ga0207684_10156628 3300025910 Bacteria 1960
97 Ga0207654_10012693 3300025911 Bacteria 4321
98 Ga0207693_10000171 3300025915 Bacteria 58894
99 Ga0207693_10000235 3300025915 Bacteria 50962
100 Ga0207693_10001666 3300025915 Bacteria 19582
101 Ga0207693_10032417 3300025915 Bacteria 4124
102 Ga0207646_10000566 3300025922 Bacteria 48722
103 Ga0207646_10003544 3300025922 Bacteria 17556
104 Ga0207646_10009407 3300025922 Bacteria 9659
105 Ga0207700_10070712 3300025928 Bacteria 2684
106 Ga0207700_10083446 3300025928 Bacteria 2501
107 Ga0207664_10065759 3300025929 Bacteria 2904
108 Ga0207665_10000267 3300025939 Bacteria 36262
109 Ga0207665_10001842 3300025939 Bacteria 14267
110 Ga0207665_10031938 3300025939 Bacteria 3485
111 Ga0207665_10033361 3300025939 Bacteria 3412
112 Ga0209588_1000873 3300027671 Bacteria 7663
113 Ga0209588_1019246 3300027671 Bacteria 2130
114 Ga0265338_10011309 3300028800 Bacteria 10327
115 Ga0265762_1000196 3300030760 Bacteria 9612
116 Ga0265762_1001166 3300030760 Bacteria 4749
117 Ga0265760_10000468 3300031090 Bacteria 11418
118 Ga0265760_10001109 3300031090 Bacteria 7839
119 Ga0265760_10006355 3300031090 Unclassified 3380
120 Ga0265760_10008489 3300031090 Bacteria 2938
121 Ga0265325_10005518 3300031241 Bacteria 7806
122 Ga0265339_10006396 3300031249 Bacteria 7735
123 Ga0265339_10011303 3300031249 Bacteria 5505
124 Ga0265316_10055606 3300031344 Bacteria 3094
125 Ga0316214_1004290 3300033545 Bacteria 1835
126 Ga0373947_0004493 3300035725 Bacteria 8185
127 Ga0373925_0011983 3300037068 Bacteria 6277
128 Ga0453683_0001926 3300044673 Bacteria 16916
129 Ga0453683_0009139 3300044673 Bacteria 6619
130 Ga0453684_0068389 3300044712 Bacteria 4510
131 Ga0453684_0254868 3300044712 Bacteria 2013
132 Ga0451576_0036419 3300045051 Bacteria 5216
133 Ga0495580_0006352 3300046472 Bacteria 9641
134 Ga0495580_0019574 3300046472 Bacteria 5029
135 Ga0495582_0029945 3300046473 Bacteria 2987
136 Ga0495642_0024562 3300046528 Bacteria 2385
137 Ga0496105_0063473 3300048908 Bacteria 3047
138 Ga0496112_0188346 3300048915 Bacteria 2026
139 Ga0496115_0009047 3300048918 Bacteria 7388
140 Ga0496115_0222262 3300048918 Bacteria 1558
141 nmdc:mga05p37_10641_c1 3300050507 Bacteria 10916
142 nmdc:mga05p37_13932_c1 3300050507 Bacteria 9639
143 nmdc:mga05p37_32846_c1 3300050507 Bacteria 6351
144 nmdc:mga0n895_142877_c1 3300050512 Bacteria 2422
145 nmdc:mga0rr50_84456_c1 3300050513 Bacteria 2458
146 nmdc:mga0a205_94265_c1 3300050515 Archaea 2892
147 Ga0495580_0000711
148 Ga0070709_10000938
149 Ga0070709_10032567
150 Ga0070709_10042344
151 Ga0070714_100055368
152 Ga0070713_100000339
153 Ga0070713_100001895
154 Ga0070713_100078170
155 Ga0070713_100151313
156 Ga0070713_100244546
157 Ga0070710_10004186
158 Ga0070710_10012161
159 Ga0070711_100015656
160 Ga0070711_100017668
161 Ga0070711_100020731
162 Ga0070708_100000365
163 Ga0070708_100000372
164 Ga0070708_100009996
165 Ga0070708_100012870
166 Ga0070708_100033574
167 Ga0070708_100086375
168 Ga0070706_100003797
169 Ga0070706_100013683
170 Ga0070706_100019106
171 Ga0070706_100019261
172 Ga0070706_100025601
173 Ga0070706_100056910
174 Ga0070706_100081123
175 Ga0070707_100004759
176 Ga0070707_100024499
177 Ga0070707_100035494
178 Ga0070698_100000725
179 Ga0070698_100003025
180 Ga0070698_100010782
181 Ga0070698_100049772
182 Ga0070698_100051248
183 Ga0070699_100001645
184 Ga0070699_100009511
185 Ga0070699_100024581
186 Ga0070699_100110744
187 Ga0070699_100165238
188 Ga0070697_100000638
189 Ga0070697_100001970
190 Ga0070697_100003042
191 Ga0070697_100007313
192 Ga0070697_100017549
193 Ga0070697_100043054
194 Ga0070697_100083662
195 Ga0070697_100114191
196 Ga0070695_100008605
197 Ga0070717_10001287
198 Ga0070717_10013873
199 Ga0070717_10034414
200 Ga0070717_10037860
201 Ga0070717_10038236
202 Ga0070717_10050770
203 Ga0070716_100000056
204 Ga0070716_100000373
205 Ga0070716_100034082
206 Ga0070716_100055533
207 Ga0070712_100000733
208 Ga0070712_100001023
209 Ga0070712_100005996
210 Ga0070712_100029129
211 Ga0070712_100053036
212 Ga0097621_100068462
213 Ga0075433_10073564
214 Ga0075433_10076706
215 Ga0075434_100086492
216 Ga0075435_100083110
217 Ga0099794_10000235
218 Ga0099794_10001944
219 Ga0099794_10029086
220 Ga0105245_10113393
221 Ga0114129_10043777
222 Ga0114129_10056908
223 Ga0114129_10080489
224 Ga0105238_10135342
225 Ga0157374_10027224
226 Ga0163162_10081360
227 Ga0157379_10146461
228 Ga0157376_10112295
229 Ga0228598_1000047
230 Ga0228598_1000437
231 Ga0228598_1005385
232 Ga0207692_10010240
233 Ga0207692_10014780
234 Ga0207692_10045450
235 Ga0207699_10002222
236 Ga0207684_10000343
237 Ga0207684_10000975
238 Ga0207684_10002892
239 Ga0207684_10029472
240 Ga0207684_10111968
241 Ga0207684_10154020
242 Ga0207684_10156628
243 Ga0207654_10012693
244 Ga0207693_10000171
245 Ga0207693_10000235
246 Ga0207693_10001666
247 Ga0207693_10032417
248 Ga0207646_10000566
249 Ga0207646_10003544
250 Ga0207646_10009407
251 Ga0207700_10070712
252 Ga0207700_10083446
253 Ga0207664_10065759
254 Ga0207665_10000267
255 Ga0207665_10001842
256 Ga0207665_10031938
257 Ga0207665_10033361
258 Ga0209588_1000873
259 Ga0209588_1019246
260 Ga0265338_10011309
261 Ga0265762_1000196
262 Ga0265762_1001166
263 Ga0265760_10000468
264 Ga0265760_10001109
265 Ga0265760_10006355
266 Ga0265760_10008489
267 Ga0265325_10005518
268 Ga0265339_10006396
269 Ga0265339_10011303
270 Ga0265316_10055606
271 Ga0316214_1004290
272 Ga0373947_0004493
273 Ga0373925_0011983
274 Ga0453683_0001926
275 Ga0453683_0009139
276 Ga0453684_0068389
277 Ga0453684_0254868
278 Ga0451576_0036419
279 Ga0495580_0006352
280 Ga0495580_0019574
281 Ga0495582_0029945
282 Ga0495642_0024562
283 Ga0496105_0063473
284 Ga0496112_0188346
285 Ga0496115_0009047
286 Ga0496115_0222262
287 nmdc:mga05p37_10641_c1
288 nmdc:mga05p37_13932_c1
289 nmdc:mga05p37_32846_c1
290 nmdc:mga0n895_142877_c1
291 nmdc:mga0rr50_84456_c1
292 nmdc:mga0a205_94265_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13365

Trypsin_2

Trypsin-like peptidase domain

136

282

0.94

PF13180

PDZ_2

PDZ domain

320

412

0.92

PF13180

PDZ_2

PDZ domain

439

526

0.91

PF00595

PDZ

PDZ domain

333

399

0.89

PF17820

PDZ_6

PDZ domain

347

401

0.78

PF00089

Trypsin

Trypsin

112

308

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zpl-assembly2.cif.gz_B crystal structure analysis of pdz domain a 0.9327 321 385
3id1-assembly1.cif.gz_A crystal structure of rsep pdz1 domain 0.9123 321 385
2qgr-assembly1.cif.gz_A structure of the r178a mutant of delta pdz degs protease 0.8968 70 286
2qf0-assembly3.cif.gz_I structure of the delta pdz truncation of the degs protease 0.8936 70 290
8f0a-assembly1.cif.gz_D client-bound structure of a degp trimer within a 12mer cage 0.8874 318 383
ID Description Score Start End Superfamily
af_Q4D678_1000_1086_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9481 320 384 2.30.42.10
af_Q58381_199_269_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9249 451 501 2.30.42.10
3id1A00 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9123 321 385 2.30.42.10
af_Q4D0I1_345_430_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9091 297 358 2.30.42.10
af_E7F2H9_595_669_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.908 297 349 2.30.42.10
ID Description Score Start End GO Terms
AF-A0A3N5FTJ1-F1-model_v4 PDZ domain-containing protein 0.9558 298 385
AF-A0A661R393-F1-model_v4 Peptidase 0.9325 296 385 GO:0004252
GO:0006508
AF-A0A7C7X7P0-F1-model_v4 M28 family peptidase 0.9325 294 386 GO:0006508
GO:0008235
AF-M5UH79-F1-model_v4 Aminopeptidase 0.9324 295 389 GO:0004177
GO:0006508
GO:0008235
AF-A0A532EGW6-F1-model_v4 PDZ domain-containing protein 0.9316 298 385

Map