F198255

General Info

Members Datasets Scaffolds Average Seq Length
146 129 102 509

Family's Representative Sequence

Representative Sequence 3300041507|Ga0451851_0223772|Ga0451851_0223772_40_1650
Length 536
Sequence MTDILKGFVAEFNAKADQQPNKVFARFNSEEITFAKLKAQAGSFAANLHLRGLKPGDRVAVMMRNSRFSLPVLFGIARAGAVWVPINAQQKGEGLRYILQHSKPKFVVCDFEYLATIGDCGAGTPTDALITIGGPRAPGSFEAVLEEDAAFVDRPLKADDLFAIMYTSGTTGRPKGVLVTHGMLRLAGEAVRTLTAMQPGDVFFVWEPFFHIGGAQLIVLPVIEDITLAMVDRFSASRFWDQVRSSAATHIHYLGGILQILLKQPEDPLDRQHAVRIAWGGGCPKDVWTKFSDRFGVEIRECYGMTEASSITTCNTEGVVGSVGKPMPWYAVEVVDENGQPCGPGERGEIVVRSSLNGALFKGYLDNPEATSKALVDSALRTGDAGTLDSEGNLWFHGRMTDSVRCKGENVSAWEVEHMAAAHLSVEDCAMIGVEADVGEQDIKLFVKAKNGKTIEPEHLSHWLAERLASYQNPRYIKVVGEFERTPSQRIMKHLLSGDLHDCWDRLAAAQSGGHARRGDQVVSQCSKRRHGGDDE

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
3 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
4 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
5 2643221618 Ensifer sp. Root231 Isolate Unclassified
6 2643221626 Ensifer sp. Root31 Isolate Unclassified
7 2643221655 Ensifer sp. Root1252 Isolate Unclassified
8 2643221659 Ensifer sp. Root127 Isolate Unclassified
9 2643221698 Ensifer sp. Root142 Isolate Unclassified
10 2643221712 Ensifer sp. Root258 Isolate Unclassified
11 2643221734 Bosea sp. Root670 Isolate Unclassified
12 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
13 2773857925 Microvirga vignae BR3299 Isolate Unclassified
14 2818991467 Bosea vestrisii 3192 Isolate Unclassified
15 2838694306 Rhizobium leguminosarum SEMIA 421 Isolate Nodule
16 2841760612 Bosea sp. Tri-49 Isolate Nodule
17 2842118031 Rhizobium esperanzae SEMIA 420 Isolate Nodule
18 2842377471 Rhizobium leguminosarum SEMIA 4024 Isolate Nodule
19 2842384541 Rhizobium leguminosarum SEMIA 4025 Isolate Nodule
20 2844104063 Bosea sp. Tri-39 Isolate Nodule
21 2844163670 Ensifer sp. 1H6 Isolate Unclassified
22 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
23 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
24 2851182111 Bosea sp. Tri-44 Isolate Nodule
25 2851246043 Bosea sp. Tri-54 Isolate Nodule
26 2878738818 Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 Isolate Nodule
27 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
28 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
29 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
30 2916076590 Sinorhizobium meliloti USDA1661 Isolate Nodule
31 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
32 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
33 2924776078 Mesorhizobium sp. M8A.F.Ca.ET.213.01.1.1 Isolate Nodule
34 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
35 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
36 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
37 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
38 2970082768 Sinorhizobium meliloti USDA1803 Isolate Nodule
39 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
40 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
41 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
42 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
43 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
44 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
45 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
46 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
47 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
48 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
49 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
50 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
51 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
52 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
53 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
54 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
55 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
56 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
57 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
58 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
59 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
60 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
61 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
62 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
63 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
64 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
65 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
66 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
67 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
68 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
69 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
70 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
71 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
72 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
73 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
74 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
75 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
76 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
77 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
78 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
79 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
81 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
82 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
83 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
94 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
95 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
96 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
97 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
98 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
99 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
100 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
101 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
102 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
103 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
104 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
105 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
106 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
107 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
111 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
112 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
113 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
114 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
115 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
119 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
120 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
125 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
126 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
127 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
128 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified
129 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 69.86
Metatranscriptomes 0
Isolates 30.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.64
Nodule 18.49
Rhizoplane 6.16
Rhizosphere 43.15
Stem 0
Stem Tuber 0
Unclassified 20.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000038 3300003187 Bacteria 180430
2 JGI25151J46595_10000044 3300003187 Bacteria 170418
3 Ga0055526_1000128 3300003771 Bacteria 67323
4 Ga0055524_1000202 3300003775 Bacteria 64794
5 Ga0065165_1000560 3300005262 Bacteria 55357
6 Ga0065165_1009073 3300005262 Bacteria 4523
7 Ga0065715_10104054 3300005293 Bacteria 2980
8 Ga0068868_100007941 3300005338 Bacteria 7581
9 Ga0070671_100117662 3300005355 Bacteria 2235
10 Ga0070674_100002378 3300005356 Bacteria 10393
11 Ga0070688_100032622 3300005365 Bacteria 3142
12 Ga0070694_100056777 3300005444 Bacteria 2660
13 Ga0070678_100078995 3300005456 Bacteria 2487
14 Ga0070706_100065636 3300005467 Bacteria 3357
15 Ga0068853_100022414 3300005539 Bacteria 5275
16 Ga0068863_100205806 3300005841 Bacteria 1894
17 Ga0068858_100283102 3300005842 Bacteria 1579
18 Ga0081455_10079140 3300005937 Bacteria 2700
19 Ga0081540_1005638 3300005983 Bacteria 9320
20 Ga0081539_10009428 3300005985 Bacteria 8162
21 Ga0081539_10019861 3300005985 Bacteria 4576
22 Ga0075365_10041681 3300006038 Bacteria 3001
23 Ga0068871_100017537 3300006358 Bacteria 5421
24 Ga0075428_100012409 3300006844 Bacteria 9476
25 Ga0075433_10022539 3300006852 Bacteria 5287
26 Ga0075434_100043882 3300006871 Bacteria 4435
27 Ga0075429_100080158 3300006880 Bacteria 2846
28 Ga0079104_1004645 3300006946 Bacteria 5771
29 Ga0111539_10006306 3300009094 Bacteria 15306
30 Ga0111539_10067694 3300009094 Bacteria 4216
31 Ga0105245_10024867 3300009098 Bacteria 5263
32 Ga0114129_10122003 3300009147 Bacteria 3586
33 Ga0105238_10041582 3300009551 Bacteria 4655
34 Ga0105238_10134979 3300009551 Bacteria 2445
35 Ga0105246_10001336 3300011119 Bacteria 14533
36 Ga0171462_1033 3300013250 Bacteria 90238
37 Ga0157374_10283023 3300013296 Bacteria 1637
38 Ga0157372_10156635 3300013307 Bacteria 2631
39 Ga0157379_10037776 3300014968 Bacteria 4306
40 Ga0214542_1001787 3300021321 Bacteria 44536
41 Ga0214543_1001073 3300021327 Bacteria 51004
42 Ga0213874_10014362 3300021377 Bacteria 2069
43 Ga0209233_1008220 3300025261 Bacteria 3243
44 Ga0209130_1000106 3300025284 Bacteria 134559
45 Ga0209675_1000971 3300025291 Bacteria 18113
46 Ga0209025_1000014 3300025294 Bacteria 865448
47 Ga0209025_1003792 3300025294 Bacteria 13824
48 Ga0209564_1000035 3300025295 Bacteria 442446
49 Ga0209256_1000025 3300025299 Bacteria 442449
50 Ga0209256_1000378 3300025299 Bacteria 71376
51 Ga0207695_10099806 3300025913 Bacteria 2900
52 Ga0207662_10013205 3300025918 Bacteria 4616
53 Ga0207694_10026225 3300025924 Bacteria 4431
54 Ga0207694_10053417 3300025924 Bacteria 3133
55 Ga0207687_10022064 3300025927 Bacteria 4235
56 Ga0207670_10020206 3300025936 Bacteria 4087
57 Ga0207679_10061344 3300025945 Bacteria 2799
58 Ga0207651_10032912 3300025960 Bacteria 3336
59 Ga0207703_10258876 3300026035 Bacteria 1572
60 Ga0207708_10043506 3300026075 Bacteria 3422
61 Ga0207698_10193065 3300026142 Bacteria 1816
62 Ga0209281_1003047 3300027111 Bacteria 5905
63 Ga0207428_10005115 3300027907 Bacteria 12303
64 Ga0307513_10037987 3300031456 Bacteria 5352
65 Ga0307408_100152131 3300031548 Bacteria 1828
66 Ga0265313_10000087 3300031595 Bacteria 91132
67 Ga0307412_10139782 3300031911 Bacteria 1772
68 Ga0373931_0007992 3300035691 Bacteria 5004
69 Ga0373931_0043014 3300035691 Bacteria 2377
70 Ga0436364_0514705 3300037853 Bacteria 4744
71 Ga0237816_00648 3300039145 Bacteria 2934
72 Ga0436363_0211911 3300039450 Bacteria 50385
73 Ga0436363_1299252 3300039450 Bacteria 1777
74 Ga0451837_0912053 3300041494 Bacteria 7206
75 Ga0451851_0223772 3300041507 Bacteria 4202
76 Ga0439435_0029953 3300042436 Bacteria 1472
77 Ga0495638_0032102 3300046460 Bacteria 3369
78 Ga0495638_0069853 3300046460 Bacteria 2152
79 Ga0495643_0050857 3300046522 Bacteria 2231
80 Ga0496104_0000277 3300048907 Bacteria 45742
81 Ga0496105_0015201 3300048908 Bacteria 6130
82 Ga0496105_0120307 3300048908 Bacteria 2166
83 Ga0496106_0138855 3300048909 Bacteria 1911
84 Ga0496108_0052290 3300048911 Bacteria 3422
85 Ga0496109_0037137 3300048912 Bacteria 4401
86 Ga0496110_0221863 3300048913 Bacteria 1719
87 Ga0496111_0019244 3300048914 Bacteria 4739
88 Ga0496112_0029027 3300048915 Bacteria 5346
89 Ga0496122_0016068 3300048925 Bacteria 7114
90 Ga0496122_0020495 3300048925 Bacteria 5969
91 Ga0496122_0032991 3300048925 Bacteria 4267
92 Ga0496123_0022290 3300048926 Bacteria 4886
93 Ga0496125_0000171 3300048928 Bacteria 145308
94 Ga0496126_0033029 3300048929 Bacteria 4871
95 Ga0501034_0111952 3300049571 Bacteria 2720
96 Ga0501083_0023765 3300049744 Bacteria 4250
97 nmdc:mga06r32_186858_c1 3300050510 Bacteria 2059
98 nmdc:mga08y16_20339_c1 3300050511 Bacteria 7007
99 nmdc:mga0n895_7348_c1 3300050512 Bacteria 9450
100 nmdc:mga0a205_37165_c1 3300050515 Bacteria 4682
101 Ga0500622_0002542 3300053156 Bacteria 13088
102 Ga0500636_0005272 3300053177 Bacteria 7364

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026035 Ga0207703_10258876 Ga0207703_102588761 434
2 3300039450 Ga0436363_1299252 Ga0436363_1299252_409_1731 440
3 3300049571 Ga0501034_0111952 Ga0501034_0111952_1361_2707 448
4 3300005937 Ga0081455_10079140 Ga0081455_100791402 460
5 3300042436 Ga0439435_0029953 Ga0439435_0029953_46_1437 461
6 3300026075 Ga0207708_10043506 Ga0207708_100435062 464
7 3300005444 Ga0070694_100056777 Ga0070694_1000567772 465
8 3300046460 Ga0495638_0032102 Ga0495638_0032102_1157_2674 475
9 3300005983 Ga0081540_1005638 Ga0081540_10056383 483
10 3300048909 Ga0496106_0138855 Ga0496106_0138855_176_1642 486
11 3300025261 Ga0209233_1008220 Ga0209233_10082202 493
12 3300037853 Ga0436364_0514705 Ga0436364_0514705_2011_3537 495
13 3300014968 Ga0157379_10037776 Ga0157379_100377763 496
14 iso_pu_bacteria 2758568016 2758640466 496
15 3300048929 Ga0496126_0033029 Ga0496126_0033029_1331_2857 498
16 3300005262 Ga0065165_1009073 Ga0065165_10090733 501
17 iso_pu_bacteria 2597490356 2599104128 502
18 iso_pu_bacteria 2846952575 2846957169 502
19 iso_pu_bacteria 2848858292 2848863700 502
20 iso_pu_bacteria 2941499720 2941502800 502
21 iso_pu_bacteria 2989771324 2989776150 502
22 3300035691 Ga0373931_0043014 Ga0373931_0043014_146_1663 503
23 3300050512 nmdc:mga0n895_7348_c1 nmdc:mga0n895_7348_c1_4157_5674 503
24 3300050515 nmdc:mga0a205_37165_c1 nmdc:mga0a205_37165_c1_2847_4364 503
25 iso_pu_bacteria 2643221618 2644108257 503
26 iso_pu_bacteria 2643221626 2644145815 503
27 iso_pu_bacteria 2643221655 2644307294 503
28 iso_pu_bacteria 2643221659 2644331310 503
29 iso_pu_bacteria 2643221698 2644541326 503
30 iso_pu_bacteria 2643221712 2644613383 503
31 iso_pu_bacteria 2844163670 2844167032 503
32 iso_pu_bacteria 2894652903 2894652985 503
33 3300005985 Ga0081539_10009428 Ga0081539_1000942810 504
34 3300006852 Ga0075433_10022539 Ga0075433_100225393 504
35 3300006871 Ga0075434_100043882 Ga0075434_1000438824 504
36 3300035691 Ga0373931_0007992 Ga0373931_0007992_2917_4446 504
37 iso_pu_bacteria 2508501050 2508730213 504
38 iso_pu_bacteria 2773857925 2774872746 504
39 iso_pu_bacteria 2878738818 2878745721 504
40 iso_pu_bacteria 2882456835 2882458613 504
41 iso_pu_bacteria 2894232714 2894235230 504
42 iso_pu_bacteria 2924776078 2924784119 504
43 3300005841 Ga0068863_100205806 Ga0068863_1002058061 505
44 3300009094 Ga0111539_10006306 Ga0111539_100063064 505
45 3300009094 Ga0111539_10067694 Ga0111539_100676944 505
46 3300009147 Ga0114129_10122003 Ga0114129_101220033 505
47 3300025945 Ga0207679_10061344 Ga0207679_100613443 505
48 3300026142 Ga0207698_10193065 Ga0207698_101930652 505
49 3300027907 Ga0207428_10005115 Ga0207428_1000511513 505
50 3300031456 Ga0307513_10037987 Ga0307513_100379875 505
51 3300046460 Ga0495638_0069853 Ga0495638_0069853_484_2001 505
52 3300048907 Ga0496104_0000277 Ga0496104_0000277_23558_25114 505
53 3300048908 Ga0496105_0015201 Ga0496105_0015201_2194_3750 505
54 3300048908 Ga0496105_0120307 Ga0496105_0120307_588_2123 505
55 3300048911 Ga0496108_0052290 Ga0496108_0052290_43_1599 505
56 3300048912 Ga0496109_0037137 Ga0496109_0037137_257_1813 505
57 3300048913 Ga0496110_0221863 Ga0496110_0221863_86_1621 505
58 3300048914 Ga0496111_0019244 Ga0496111_0019244_740_2296 505
59 3300048915 Ga0496112_0029027 Ga0496112_0029027_1073_2629 505
60 3300050510 nmdc:mga06r32_186858_c1 nmdc:mga06r32_186858_c1_35_1591 505
61 3300050511 nmdc:mga08y16_20339_c1 nmdc:mga08y16_20339_c1_553_2109 505
62 iso_pu_bacteria 2643221547 2643754755 505
63 iso_pu_bacteria 2643221734 2644735993 505
64 iso_pu_bacteria 8054563764 8054565097 505
65 3300005338 Ga0068868_100007941 Ga0068868_1000079414 506
66 3300005365 Ga0070688_100032622 Ga0070688_1000326222 506
67 3300005456 Ga0070678_100078995 Ga0070678_1000789952 506
68 3300005842 Ga0068858_100283102 Ga0068858_1002831021 506
69 3300006358 Ga0068871_100017537 Ga0068871_1000175373 506
70 3300006844 Ga0075428_100012409 Ga0075428_1000124095 506
71 3300006880 Ga0075429_100080158 Ga0075429_1000801582 506
72 3300009098 Ga0105245_10024867 Ga0105245_100248672 506
73 3300011119 Ga0105246_10001336 Ga0105246_1000133611 506
74 3300013296 Ga0157374_10283023 Ga0157374_102830231 506
75 3300025918 Ga0207662_10013205 Ga0207662_100132053 506
76 3300025927 Ga0207687_10022064 Ga0207687_100220643 506
77 3300025936 Ga0207670_10020206 Ga0207670_100202064 506
78 iso_pu_bacteria 2508501122 2509112572 506
79 iso_pu_bacteria 2838694306 2838699507 506
80 iso_pu_bacteria 2842118031 2842124619 506
81 iso_pu_bacteria 2842377471 2842384247 506
82 iso_pu_bacteria 2842384541 2842389619 506
83 iso_pu_bacteria 2916076590 2916079229 506
84 iso_pu_bacteria 2921201388 2921203981 506
85 iso_pu_bacteria 2921201388 2921204729 506
86 iso_pu_bacteria 2937106411 2937108370 506
87 iso_pu_bacteria 2937106411 2937109029 506
88 iso_pu_bacteria 2967664464 2967666914 506
89 iso_pu_bacteria 2967664464 2967667429 506
90 iso_pu_bacteria 2967735183 2967741172 506
91 iso_pu_bacteria 2970082768 2970088223 506
92 3300009551 Ga0105238_10134979 Ga0105238_101349792 507
93 3300013307 Ga0157372_10156635 Ga0157372_101566352 507
94 3300025913 Ga0207695_10099806 Ga0207695_100998061 507
95 3300025924 Ga0207694_10026225 Ga0207694_100262252 507
96 iso_pu_bacteria 2818991467 2819718071 507
97 iso_pu_bacteria 2841760612 2841765100 507
98 iso_pu_bacteria 2844104063 2844106710 507
99 iso_pu_bacteria 2851182111 2851185401 507
100 iso_pu_bacteria 2851246043 2851248750 507
101 iso_pu_bacteria 2917699015 2917700457 507
102 iso_pu_bacteria 8057529695 8057532208 507
103 3300031548 Ga0307408_100152131 Ga0307408_1001521312 508
104 3300049744 Ga0501083_0023765 Ga0501083_0023765_206_1732 508
105 3300031595 Ga0265313_10000087 Ga0265313_1000008748 509
106 3300039145 Ga0237816_00648 Ga0237816_00648_790_2319 509
107 3300046522 Ga0495643_0050857 Ga0495643_0050857_605_2134 509
108 3300053156 Ga0500622_0002542 Ga0500622_0002542_8495_10024 509
109 3300053177 Ga0500636_0005272 Ga0500636_0005272_5798_7327 509
110 3300005293 Ga0065715_10104054 Ga0065715_101040541 510
111 3300005355 Ga0070671_100117662 Ga0070671_1001176622 510
112 3300005356 Ga0070674_100002378 Ga0070674_1000023781 510
113 3300005985 Ga0081539_10019861 Ga0081539_100198614 510
114 3300006946 Ga0079104_1004645 Ga0079104_10046454 510
115 3300021321 Ga0214542_1001787 Ga0214542_100178718 510
116 3300021327 Ga0214543_1001073 Ga0214543_100107329 510
117 3300025294 Ga0209025_1003792 Ga0209025_10037926 510
118 3300025960 Ga0207651_10032912 Ga0207651_100329124 510
119 3300027111 Ga0209281_1003047 Ga0209281_10030473 510
120 3300031911 Ga0307412_10139782 Ga0307412_101397821 510
121 3300041494 Ga0451837_0912053 Ga0451837_0912053_3121_4698 510
122 3300041507 Ga0451851_0223772 Ga0451851_0223772_40_1650 510
123 3300048925 Ga0496122_0016068 Ga0496122_0016068_102_1643 510
124 3300048928 Ga0496125_0000171 Ga0496125_0000171_23988_25529 510
125 3300003187 JGI25151J46595_10000038 JGI25151J46595_10000038189 511
126 3300003187 JGI25151J46595_10000044 JGI25151J46595_10000044172 511
127 3300003771 Ga0055526_1000128 Ga0055526_100012834 511
128 3300003775 Ga0055524_1000202 Ga0055524_100020233 511
129 3300005262 Ga0065165_1000560 Ga0065165_100056023 511
130 3300005467 Ga0070706_100065636 Ga0070706_1000656362 511
131 3300005539 Ga0068853_100022414 Ga0068853_1000224143 511
132 3300006038 Ga0075365_10041681 Ga0075365_100416812 511
133 3300009551 Ga0105238_10041582 Ga0105238_100415824 511
134 3300013250 Ga0171462_1033 Ga0171462_10333 511
135 3300021377 Ga0213874_10014362 Ga0213874_100143621 511
136 3300025284 Ga0209130_1000106 Ga0209130_100010625 511
137 3300025291 Ga0209675_1000971 Ga0209675_100097111 511
138 3300025294 Ga0209025_1000014 Ga0209025_1000014183 511
139 3300025295 Ga0209564_1000035 Ga0209564_1000035166 511
140 3300025299 Ga0209256_1000025 Ga0209256_1000025280 511
141 3300025299 Ga0209256_1000378 Ga0209256_100037864 511
142 3300025924 Ga0207694_10053417 Ga0207694_100534172 511
143 3300039450 Ga0436363_0211911 Ga0436363_0211911_25541_27121 511
144 3300048925 Ga0496122_0020495 Ga0496122_0020495_3077_4612 511
145 3300048925 Ga0496122_0032991 Ga0496122_0032991_1298_2833 511
146 3300048926 Ga0496123_0022290 Ga0496123_0022290_382_1917 511

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13193

AMP-binding_C

AMP-binding enzyme C-terminal domain

415

490

0.94

PF00501

AMP-binding

AMP-binding enzyme

12

365

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
5x8f-assembly1.cif.gz_A ternary complex structure of a double mutant i454ra456k of o-succinylbenzoate coa synthetase (mene) from bacillus subtilis bound with amp and its product analogue osb-ncoa at 1.76 angstrom 0.9235 12 493
5x8g-assembly2.cif.gz_D binary complex structure of a double mutant i454ra456k of o-succinylbenzoate coa synthetase (mene) from bacillus subtilis bound with its product analogue osb-ncoa at 1.90 angstrom 0.9215 12 498
5x8g-assembly2.cif.gz_B binary complex structure of a double mutant i454ra456k of o-succinylbenzoate coa synthetase (mene) from bacillus subtilis bound with its product analogue osb-ncoa at 1.90 angstrom 0.9145 12 503
2p2j-assembly2.cif.gz_B acetyl-coa synthetase, k609a mutation 0.9086 8 492
5gtd-assembly1.cif.gz_B o-succinylbenzoate coa synthetase (mene) from bacillus subtilis in complex with the acyl-adenylate intermediate osb-amp 0.9079 12 397
ID Description Score Start End Superfamily
af_P31552_422_517_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9719 401 495 3.30.300.30
af_I1LI90_433_534_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9569 399 493 3.30.300.30
af_Q9SS00_444_572_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9557 400 493 3.30.300.30
af_P96843_409_507_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.955 400 493 3.30.300.30
af_K7VHQ0_441_545_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9534 400 493 3.30.300.30
ID Description Score Start End GO Terms
AF-A0A522AV37-F1-model_v4 AMP-dependent synthetase 0.9426 406 492 GO:0016874
AF-A0A538IHP9-F1-model_v4 Fatty acid--CoA ligase family protein 0.9423 8 108 GO:0016874
AF-A0A2D9F669-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9363 404 493 GO:0006631
GO:0031956
AF-A0A419F428-F1-model_v4 AMP-dependent synthetase/ligase domain-containing protein 0.9279 7 312 GO:0016405
AF-A0A2E9FG42-F1-model_v4 Fatty acid--CoA ligase 0.9211 1 493 GO:0006631
GO:0031956

Feature Viewer

pLDDT pTM Quality
92.61 0.92 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map