F197131

General Info

Members Datasets Scaffolds Average Seq Length
146 111 125 238

Family's Representative Sequence

Representative Sequence 3300005844|Ga0068862_100509166|Ga0068862_1005091661
Length 248
Sequence LRNLNHKAMTCIIIDDEPLAREAIEMLINKTDDLNLIGSFNSPETATSFIESNTVELIFLDIHMPGINGIEFARSIPKETFVIFTTAYSEFATDSYEVDAIDYLIKPVKLERFQKAVEKAHTYSKLFKADYANNNIEQIADDFFFVKADRRIFKVYFNNILFIQGLKDYVVMHSENQKVITAMNIKTIYDQLPKDMFVRVSKSYVINVKHIGSVDNNNVYIGANEIPIGSIYRDFFFSEFVTKKIVGR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
4 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
5 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
6 2738541283 Pedobacter sp. OK701 Isolate Unclassified
7 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
8 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
9 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
10 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
11 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
12 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
13 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
14 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
15 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
16 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
17 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
18 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
19 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
20 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
21 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
22 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
23 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
24 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
25 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
26 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
27 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
28 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
29 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
30 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
31 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
32 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
33 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
38 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300012495 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610 Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
48 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
49 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
53 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
58 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
59 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
68 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
69 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
70 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
71 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
72 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
75 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
76 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
77 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
78 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
81 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
85 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
86 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
87 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
88 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
89 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
95 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
96 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
97 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
98 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
99 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
100 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
101 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
102 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
103 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
104 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
105 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
106 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
110 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
111 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 85.62
Metatranscriptomes 0
Isolates 14.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.23
Nodule 0
Rhizoplane 0.68
Rhizosphere 59.59
Stem 0
Stem Tuber 0
Unclassified 18.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1534318 2162886007 Bacteria 23404
2 JGI24741J21665_1013367 3300001915 Bacteria 1394
3 JGI24740J21852_10000591 3300001979 Bacteria 15662
4 JGI24739J22299_10007024 3300001989 Bacteria 4239
5 JGI25162J39368_1000107 3300002737 Bacteria 90782
6 JGI25158J39367_1005887 3300002739 Bacteria 1775
7 JGI25153J46596_10000655 3300003215 Bacteria 21176
8 JGI25153J46596_10008689 3300003215 Bacteria 4824
9 rootH1_10010246 3300003316 Bacteria 6580
10 rootH1_10096848 3300003316 Bacteria 1819
11 rootL2_10067798 3300003322 Bacteria 5665
12 rootH1_10018375 3300003323 Bacteria 4591
13 rootH1_10084825 3300003323 Bacteria 4539
14 rootH1_10379666 3300003323 Bacteria 1533
15 JGI25160J50197_1000950 3300003354 Bacteria 15200
16 Ga0055526_1008571 3300003771 Bacteria 5070
17 Ga0055534_1007027 3300003784 Bacteria 2746
18 Ga0065714_10002558 3300005288 Bacteria 15119
19 Ga0065704_10070217 3300005289 Bacteria 69033
20 Ga0068855_100085327 3300005563 Bacteria 3654
21 Ga0068854_100026231 3300005578 Bacteria 4003
22 Ga0068862_100509166 3300005844 Bacteria 1144
23 Ga0075366_10059997 3300006195 Bacteria 2260
24 Ga0105244_10000050 3300009036 Bacteria 138868
25 Ga0105240_10102734 3300009093 Bacteria 3473
26 Ga0105240_10120333 3300009093 Bacteria 3162
27 Ga0105237_10000146 3300009545 Bacteria 99601
28 Ga0105237_10002743 3300009545 Bacteria 21471
29 Ga0105237_10009901 3300009545 Bacteria 10176
30 Ga0105237_10015020 3300009545 Bacteria 8069
31 Ga0105239_10000212 3300010375 Bacteria 85747
32 Ga0105239_10000981 3300010375 Bacteria 40055
33 Ga0105239_10003627 3300010375 Bacteria 18869
34 Ga0157323_1001151 3300012495 Bacteria 1277
35 Ga0157373_10001988 3300013100 Bacteria 15496
36 Ga0157371_10062563 3300013102 Bacteria 2638
37 Ga0157371_10084986 3300013102 Bacteria 2242
38 Ga0157370_10000296 3300013104 Bacteria 63170
39 Ga0157370_10003206 3300013104 Bacteria 19346
40 Ga0157370_10004391 3300013104 Bacteria 16183
41 Ga0157370_10005848 3300013104 Bacteria 13740
42 Ga0157370_10007086 3300013104 Bacteria 12244
43 Ga0157370_10109449 3300013104 Bacteria 2583
44 Ga0157370_10303092 3300013104 Bacteria 1475
45 Ga0157374_10001577 3300013296 Bacteria 19139
46 Ga0182008_10000049 3300014497 Bacteria 105068
47 Ga0182008_10000431 3300014497 Bacteria 32322
48 Ga0182008_10019510 3300014497 Bacteria 3499
49 Ga0182006_1004388 3300015261 Bacteria 6971
50 Ga0182006_1012434 3300015261 Bacteria 3722
51 Ga0183373_1001 3300015682 Bacteria 1410374
52 Ga0163161_10000584 3300017792 Bacteria 29335
53 Ga0163161_10027526 3300017792 Bacteria 4033
54 Ga0209436_100069 3300025208 Bacteria 52691
55 Ga0209437_100148 3300025233 Bacteria 158795
56 Ga0209129_1008664 3300025258 Bacteria 2796
57 Ga0209455_1021475 3300025272 Unclassified 1252
58 Ga0209130_1001736 3300025284 Bacteria 13011
59 Ga0209564_1001840 3300025295 Bacteria 19415
60 Ga0209758_1002123 3300025297 Bacteria 20929
61 Ga0207426_1000342 3300025302 Bacteria 87421
62 Ga0207426_1009405 3300025302 Bacteria 3866
63 Ga0207655_1000489 3300025728 Bacteria 51011
64 Ga0207695_10236151 3300025913 Bacteria 1731
65 Ga0207671_10001255 3300025914 Bacteria 29914
66 Ga0207671_10003281 3300025914 Bacteria 16281
67 Ga0207671_10010152 3300025914 Bacteria 7802
68 Ga0207671_10099304 3300025914 Bacteria 2203
69 Ga0207667_10416330 3300025949 Bacteria 1367
70 Ga0207640_10092659 3300025981 Bacteria 2097
71 Ga0207674_10093896 3300026116 Bacteria 2988
72 Ga0268265_10815909 3300028380 Bacteria 910
73 Ga0307515_10000250 3300028794 Bacteria 133055
74 Ga0307515_10120100 3300028794 Bacteria 2984
75 Ga0307511_10000033 3300030521 Bacteria 104421
76 Ga0316177_1009199 3300030731 Bacteria 2827
77 Ga0316176_1200440 3300030732 Bacteria 21087
78 Ga0316183_1004801 3300030742 Bacteria 53681
79 Ga0316181_1138860 3300030744 Bacteria 58548
80 Ga0307412_10000789 3300031911 Bacteria 18252
81 Ga0307414_10171288 3300032004 Bacteria 1736
82 Ga0307510_10001458 3300033180 Bacteria 26051
83 Ga0439447_002143 3300041407 Bacteria 7237
84 Ga0439465_0000401 3300041413 Bacteria 12559
85 Ga0451791_1392839 3300041451 Bacteria 964
86 Ga0439445_0000136 3300042004 Bacteria 12780
87 Ga0466972_0046583 3300044658 Bacteria 2099
88 Ga0466968_0318649 3300044735 Unclassified 751
89 Ga0466970_0300849 3300044765 Unclassified 905
90 Ga0466957_0002001 3300044842 Bacteria 10851
91 Ga0466959_0001939 3300045049 Bacteria 13031
92 Ga0495627_002349 3300046453 Bacteria 9248
93 Ga0495627_003185 3300046453 Bacteria 7385
94 Ga0495627_003414 3300046453 Bacteria 7031
95 Ga0495590_0002467 3300046457 Bacteria 7657
96 Ga0495606_0005646 3300046507 Bacteria 11863
97 Ga0495633_0076911 3300046558 Bacteria 1554
98 Ga0495668_0000329 3300046616 Bacteria 64703
99 Ga0495611_0000235 3300046648 Bacteria 38170
100 Ga0495625_0143388 3300046660 Bacteria 1610
101 Ga0495686_0000004 3300047472 Bacteria 869019
102 Ga0496122_0000435 3300048925 Bacteria 87533
103 Ga0496122_0000577 3300048925 Bacteria 75200
104 Ga0496122_0052345 3300048925 Bacteria 3091
105 Ga0496123_0011084 3300048926 Bacteria 7867
106 Ga0496124_0304227 3300048927 Bacteria 1150
107 Ga0496125_0000156 3300048928 Bacteria 151400
108 Ga0496125_0015648 3300048928 Bacteria 7319
109 Ga0501217_019591 3300049661 Unclassified 1581
110 Ga0501241_000006 3300049758 Bacteria 149999
111 Ga0501269_000030 3300049766 Bacteria 45680
112 nmdc:mga0k408_26613_c1 3300050493 Unclassified 3280
113 Ga0500583_0000122 3300053092 Bacteria 36660
114 Ga0500651_0017142 3300053093 Bacteria 4462
115 Ga0500562_000020 3300053108 Bacteria 113686
116 Ga0500608_000514 3300053122 Bacteria 14480
117 Ga0500658_0244029 3300053134 Bacteria 825
118 Ga0500564_121001 3300053138 Bacteria 1140
119 Ga0500568_0007783 3300053139 Bacteria 5221
120 Ga0500616_0102190 3300053153 Bacteria 1399
121 Ga0500622_0000467 3300053156 Bacteria 38187
122 Ga0500622_0001279 3300053156 Bacteria 20471
123 Ga0500622_0011531 3300053156 Bacteria 4813
124 Ga0500645_059931 3300053730 Bacteria 1102
125 Ga0500661_004921 3300055283 Bacteria 2501

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042004 Ga0439445_0000136 Ga0439445_0000136_11247_11975 199
2 3300031911 Ga0307412_10000789 Ga0307412_1000078917 200
3 3300032004 Ga0307414_10171288 Ga0307414_101712881 200
4 3300041413 Ga0439465_0000401 Ga0439465_0000401_4541_5290 200
5 3300049758 Ga0501241_000006 Ga0501241_000006_116136_116864 200
6 3300049766 Ga0501269_000030 Ga0501269_000030_21122_21871 200
7 3300044735 Ga0466968_0318649 Ga0466968_0318649_33_671 212
8 3300010375 Ga0105239_10000981 Ga0105239_100009813 220
9 3300005578 Ga0068854_100026231 Ga0068854_1000262313 223
10 3300025981 Ga0207640_10092659 Ga0207640_100926592 223
11 3300049661 Ga0501217_019591 Ga0501217_019591_663_1352 223
12 3300013104 Ga0157370_10109449 Ga0157370_101094492 224
13 3300046453 Ga0495627_003185 Ga0495627_003185_4187_4915 224
14 iso_pu_bacteria 2958512119 2958514068 231
15 3300009093 Ga0105240_10102734 Ga0105240_101027342 233
16 3300053122 Ga0500608_000514 Ga0500608_000514_8094_8795 233
17 iso_pu_bacteria 2738541283 2738757402 233
18 3300025272 Ga0209455_1021475 Ga0209455_10214752 234
19 3300053138 Ga0500564_121001 Ga0500564_121001_202_909 235
20 3300053153 Ga0500616_0102190 Ga0500616_0102190_381_1088 235
21 iso_pu_bacteria 2511231000 2511233126 236
22 iso_pu_bacteria 2582581281 2585157209 236
23 iso_pu_bacteria 2582581282 2585161720 236
24 iso_pu_bacteria 2585428061 2587752930 236
25 iso_pu_bacteria 2775506739 2775673656 236
26 iso_pu_bacteria 2818991460 2819679552 236
27 iso_pu_bacteria 2849281842 2849282349 236
28 iso_pu_bacteria 2884791551 2884794219 236
29 iso_pu_bacteria 2896085136 2896089403 236
30 iso_pu_bacteria 2919186247 2919186269 236
31 iso_pu_bacteria 2929154850 2929156455 236
32 iso_pu_bacteria 2929177148 2929182109 236
33 iso_pu_bacteria 2929239360 2929239437 236
34 iso_pu_bacteria 2939664404 2939666461 236
35 iso_pu_bacteria 2945977869 2945983984 236
36 iso_pu_bacteria 2946013367 2946016624 236
37 iso_pu_bacteria 2958512119 2958515333 236
38 iso_pu_bacteria 8003151029 8003156479 236
39 iso_pu_bacteria 8003151029 8003157849 236
40 3300013104 Ga0157370_10005848 Ga0157370_1000584811 237
41 3300028794 Ga0307515_10120100 Ga0307515_101201003 238
42 3300041451 Ga0451791_1392839 Ga0451791_1392839_193_912 239
43 3300046453 Ga0495627_003414 Ga0495627_003414_63_782 239
44 3300047472 Ga0495686_0000004 Ga0495686_0000004_626236_626955 239
45 2162886007 SwRhRL2b_contig_1534318 SwRhRL2b_0833.00001920 240
46 3300001915 JGI24741J21665_1013367 JGI24741J21665_10133672 240
47 3300001979 JGI24740J21852_10000591 JGI24740J21852_100005918 240
48 3300001989 JGI24739J22299_10007024 JGI24739J22299_100070243 240
49 3300002737 JGI25162J39368_1000107 JGI25162J39368_100010713 240
50 3300002739 JGI25158J39367_1005887 JGI25158J39367_10058872 240
51 3300003215 JGI25153J46596_10000655 JGI25153J46596_100006556 240
52 3300003215 JGI25153J46596_10008689 JGI25153J46596_100086893 240
53 3300003316 rootH1_10010246 rootH1_100102465 240
54 3300003316 rootH1_10096848 rootH1_100968482 240
55 3300003322 rootL2_10067798 rootL2_100677984 240
56 3300003323 rootH1_10018375 rootH1_100183752 240
57 3300003323 rootH1_10084825 rootH1_100848253 240
58 3300003323 rootH1_10379666 rootH1_103796661 240
59 3300003354 JGI25160J50197_1000950 JGI25160J50197_100095013 240
60 3300003771 Ga0055526_1008571 Ga0055526_10085713 240
61 3300003784 Ga0055534_1007027 Ga0055534_10070273 240
62 3300005288 Ga0065714_10002558 Ga0065714_100025583 240
63 3300005289 Ga0065704_10070217 Ga0065704_1007021724 240
64 3300005563 Ga0068855_100085327 Ga0068855_1000853272 240
65 3300005844 Ga0068862_100509166 Ga0068862_1005091661 240
66 3300006195 Ga0075366_10059997 Ga0075366_100599972 240
67 3300009036 Ga0105244_10000050 Ga0105244_10000050112 240
68 3300009093 Ga0105240_10120333 Ga0105240_101203333 240
69 3300009545 Ga0105237_10000146 Ga0105237_1000014620 240
70 3300009545 Ga0105237_10002743 Ga0105237_100027437 240
71 3300009545 Ga0105237_10009901 Ga0105237_100099018 240
72 3300009545 Ga0105237_10015020 Ga0105237_100150205 240
73 3300010375 Ga0105239_10000212 Ga0105239_1000021274 240
74 3300010375 Ga0105239_10003627 Ga0105239_100036272 240
75 3300012495 Ga0157323_1001151 Ga0157323_10011512 240
76 3300013100 Ga0157373_10001988 Ga0157373_100019883 240
77 3300013102 Ga0157371_10062563 Ga0157371_100625633 240
78 3300013102 Ga0157371_10084986 Ga0157371_100849862 240
79 3300013104 Ga0157370_10000296 Ga0157370_1000029644 240
80 3300013104 Ga0157370_10003206 Ga0157370_100032067 240
81 3300013104 Ga0157370_10004391 Ga0157370_1000439111 240
82 3300013104 Ga0157370_10007086 Ga0157370_100070865 240
83 3300013104 Ga0157370_10303092 Ga0157370_103030922 240
84 3300013296 Ga0157374_10001577 Ga0157374_100015773 240
85 3300014497 Ga0182008_10000049 Ga0182008_1000004925 240
86 3300014497 Ga0182008_10000431 Ga0182008_1000043114 240
87 3300014497 Ga0182008_10019510 Ga0182008_100195103 240
88 3300015261 Ga0182006_1004388 Ga0182006_10043884 240
89 3300015261 Ga0182006_1012434 Ga0182006_10124343 240
90 3300015682 Ga0183373_1001 Ga0183373_1001740 240
91 3300017792 Ga0163161_10000584 Ga0163161_1000058419 240
92 3300017792 Ga0163161_10027526 Ga0163161_100275263 240
93 3300025208 Ga0209436_100069 Ga0209436_1000692 240
94 3300025233 Ga0209437_100148 Ga0209437_100148130 240
95 3300025258 Ga0209129_1008664 Ga0209129_10086642 240
96 3300025284 Ga0209130_1001736 Ga0209130_10017366 240
97 3300025295 Ga0209564_1001840 Ga0209564_100184016 240
98 3300025297 Ga0209758_1002123 Ga0209758_10021239 240
99 3300025302 Ga0207426_1000342 Ga0207426_100034226 240
100 3300025302 Ga0207426_1009405 Ga0207426_10094053 240
101 3300025728 Ga0207655_1000489 Ga0207655_100048936 240
102 3300025913 Ga0207695_10236151 Ga0207695_102361512 240
103 3300025914 Ga0207671_10001255 Ga0207671_100012555 240
104 3300025914 Ga0207671_10003281 Ga0207671_100032816 240
105 3300025914 Ga0207671_10010152 Ga0207671_100101522 240
106 3300025914 Ga0207671_10099304 Ga0207671_100993042 240
107 3300025949 Ga0207667_10416330 Ga0207667_104163302 240
108 3300026116 Ga0207674_10093896 Ga0207674_100938962 240
109 3300028380 Ga0268265_10815909 Ga0268265_108159091 240
110 3300028794 Ga0307515_10000250 Ga0307515_10000250102 240
111 3300030521 Ga0307511_10000033 Ga0307511_1000003339 240
112 3300030731 Ga0316177_1009199 Ga0316177_10091992 240
113 3300030732 Ga0316176_1200440 Ga0316176_120044014 240
114 3300030742 Ga0316183_1004801 Ga0316183_100480142 240
115 3300030744 Ga0316181_1138860 Ga0316181_11388602 240
116 3300033180 Ga0307510_10001458 Ga0307510_100014586 240
117 3300041407 Ga0439447_002143 Ga0439447_002143_4276_4998 240
118 3300044658 Ga0466972_0046583 Ga0466972_0046583_38_760 240
119 3300044765 Ga0466970_0300849 Ga0466970_0300849_82_804 240
120 3300044842 Ga0466957_0002001 Ga0466957_0002001_2323_3051 240
121 3300045049 Ga0466959_0001939 Ga0466959_0001939_3805_4527 240
122 3300046453 Ga0495627_002349 Ga0495627_002349_7976_8698 240
123 3300046457 Ga0495590_0002467 Ga0495590_0002467_5835_6557 240
124 3300046507 Ga0495606_0005646 Ga0495606_0005646_4035_4757 240
125 3300046558 Ga0495633_0076911 Ga0495633_0076911_425_1147 240
126 3300046616 Ga0495668_0000329 Ga0495668_0000329_25636_26361 240
127 3300046648 Ga0495611_0000235 Ga0495611_0000235_10757_11479 240
128 3300046660 Ga0495625_0143388 Ga0495625_0143388_521_1270 240
129 3300048925 Ga0496122_0000435 Ga0496122_0000435_69531_70262 240
130 3300048925 Ga0496122_0000577 Ga0496122_0000577_27010_27732 240
131 3300048925 Ga0496122_0052345 Ga0496122_0052345_1865_2587 240
132 3300048926 Ga0496123_0011084 Ga0496123_0011084_3966_4697 240
133 3300048927 Ga0496124_0304227 Ga0496124_0304227_321_1049 240
134 3300048928 Ga0496125_0000156 Ga0496125_0000156_31521_32243 240
135 3300048928 Ga0496125_0015648 Ga0496125_0015648_4924_5652 240
136 3300050493 nmdc:mga0k408_26613_c1 nmdc:mga0k408_26613_c1_459_1205 240
137 3300053092 Ga0500583_0000122 Ga0500583_0000122_20755_21483 240
138 3300053093 Ga0500651_0017142 Ga0500651_0017142_789_1511 240
139 3300053108 Ga0500562_000020 Ga0500562_000020_25450_26172 240
140 3300053134 Ga0500658_0244029 Ga0500658_0244029_74_796 240
141 3300053139 Ga0500568_0007783 Ga0500568_0007783_1422_2156 240
142 3300053156 Ga0500622_0000467 Ga0500622_0000467_4566_5288 240
143 3300053156 Ga0500622_0001279 Ga0500622_0001279_13725_14447 240
144 3300053156 Ga0500622_0011531 Ga0500622_0011531_3125_3847 240
145 3300053730 Ga0500645_059931 Ga0500645_059931_89_811 240
146 3300055283 Ga0500661_004921 Ga0500661_004921_865_1587 240

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

11

118

0.95

PF04397

LytTR

LytTr DNA-binding domain

150

237

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6m8o-assembly1.cif.gz_A crystal structure of the receiver domain of lytr from staphylococcus aureus 0.9272 1 112
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.9113 2 111
5w43-assembly1.cif.gz_A structure of the two-component response regulator rcsb-dna complex 0.9085 1 115
1ab6-assembly2.cif.gz_B structure of chey mutant f14n, v86t 0.9081 1 115
6zii-assembly1.cif.gz_B structure of the isolated rec domain of rcsb from salmonella enterica serovar typhimurium in the presence of phosphomimetic bef3- 0.9027 1 110
ID Description Score Start End Superfamily
af_P0AE39_136_205_2.40.50.40 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.9416 133 201 2.40.50.40
6m8oA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9272 1 112 3.40.50.2300
af_P60611_1_129_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9188 1 122 3.40.50.2300
af_P0AFT5_1_126_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9164 1 113 3.40.50.2300
af_P0AE39_136_205_2.40.50.40 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.9162 133 201 2.40.50.40
ID Description Score Start End GO Terms
AF-A0A6L4A659-F1-model_v4 deleted 0.9664 1 109
AF-A0A5J4T1K6-F1-model_v4 HTH LytTR-type domain-containing protein 0.9646 149 231 GO:0000156
GO:0003677
AF-A0A1G8F6E8-F1-model_v4 Response regulator receiver domain-containing protein 0.9642 1 120 GO:0000160
AF-A0A4Q5YUE0-F1-model_v4 LytTR family transcriptional regulator 0.9618 135 230 GO:0000156
GO:0003677
AF-A0A2E9G1V1-F1-model_v4 deleted 0.9557 1 101

Feature Viewer

pLDDT pTM Quality
82.69 0.58 Medium
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Predicted Structure (AlphaFold2)

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