F196313

General Info

Members Datasets Scaffolds Average Seq Length
146 82 146 278

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10184363|rootH1_101843631
Length 311
Sequence MERHSKPSPDIPKWSALLVEAVNKPGMIMQAYSAFHNYSIGNQILALVQCQLRGLEPGPINTFPGWQALGRTVKRGERALILCMPITRKVRDEEAQESEGENGERTFTSFMHKARWFVVDQTVGEEFTPPRLTEWDAERALVALNIEQITFTHTDGNCQGYAKKRQIAINPVAQLPHKTLFHEMAHVVLGHTTEADFTDTERTPKNLREVEAESVALLCCEALNLEGAEYCRGYIQNWLGPSNGNGDAIPEKSAQKIFRAADQILRAGRRQANERRKASEHTNGLGKRCHARLAHAPTFQPSGRKIDATKP

Samples

Sample ID Description Type Environment
1 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
25 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
71 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
72 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
75 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
76 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
77 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
78 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
79 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
80 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
81 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
82 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.68
Rhizosphere 95.89
Stem 0
Stem Tuber 0
Unclassified 3.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 CNAas_1001397 3300000532 Bacteria 2076
2 rootH1_10184363 3300003316 Unclassified 1223
3 rootL2_10280101 3300003322 Bacteria 1913
4 Ga0065715_10037628 3300005293 Bacteria 1480
5 Ga0065715_10089637 3300005293 Bacteria 9127
6 Ga0065715_10205510 3300005293 Bacteria 1336
7 Ga0065707_10273043 3300005295 Bacteria 1066
8 Ga0068869_100003075 3300005334 Bacteria 10156
9 Ga0070680_100001673 3300005336 Bacteria 16236
10 Ga0070680_100017265 3300005336 Bacteria 5687
11 Ga0070682_100000295 3300005337 Bacteria 34835
12 Ga0070682_100011295 3300005337 Bacteria 5099
13 Ga0070689_100000379 3300005340 Bacteria 26086
14 Ga0070689_100003683 3300005340 Bacteria 10234
15 Ga0070687_100145309 3300005343 Bacteria 1386
16 Ga0070669_100020143 3300005353 Unclassified 4763
17 Ga0070671_100000252 3300005355 Bacteria 35895
18 Ga0070673_100065658 3300005364 Bacteria 2896
19 Ga0070703_10000033 3300005406 Bacteria 67512
20 Ga0070694_100008030 3300005444 Bacteria 6448
21 Ga0070694_100008361 3300005444 Bacteria 6332
22 Ga0070694_100020908 3300005444 Bacteria 4177
23 Ga0070694_100287509 3300005444 Bacteria 1255
24 Ga0070694_100488874 3300005444 Bacteria 978
25 Ga0070708_100002607 3300005445 Bacteria 13950
26 Ga0070708_100002801 3300005445 Bacteria 13536
27 Ga0070708_100162625 3300005445 Bacteria 2081
28 Ga0070708_100239278 3300005445 Bacteria 1704
29 Ga0070681_10000035 3300005458 Bacteria 97925
30 Ga0070681_10000042 3300005458 Bacteria 87425
31 Ga0070681_10005474 3300005458 Bacteria 12263
32 Ga0070706_100001134 3300005467 Bacteria 28771
33 Ga0070706_100001410 3300005467 Bacteria 25418
34 Ga0070706_100006804 3300005467 Bacteria 10792
35 Ga0070707_100000333 3300005468 Bacteria 46356
36 Ga0070707_100001242 3300005468 Bacteria 25059
37 Ga0070707_100141684 3300005468 Unclassified 2339
38 Ga0070707_100214257 3300005468 Bacteria 1877
39 Ga0070698_100001830 3300005471 Bacteria 23687
40 Ga0070698_100032817 3300005471 Bacteria 5377
41 Ga0070699_100000503 3300005518 Bacteria 37102
42 Ga0070699_100000970 3300005518 Bacteria 26728
43 Ga0070699_100043075 3300005518 Bacteria 3908
44 Ga0070699_100127904 3300005518 Bacteria 2238
45 Ga0070679_100000072 3300005530 Bacteria 75252
46 Ga0070679_100000703 3300005530 Bacteria 28694
47 Ga0070697_100000165 3300005536 Bacteria 54046
48 Ga0070697_100014859 3300005536 Bacteria 6110
49 Ga0070697_100025916 3300005536 Bacteria 4677
50 Ga0070697_100253368 3300005536 Unclassified 1506
51 Ga0070696_100008295 3300005546 Bacteria 6952
52 Ga0070693_100276187 3300005547 Bacteria 1123
53 Ga0070704_100001129 3300005549 Bacteria 13923
54 Ga0070704_100015047 3300005549 Bacteria 4848
55 Ga0070704_100178215 3300005549 Bacteria 1697
56 Ga0070704_100294618 3300005549 Bacteria 1349
57 Ga0070664_100592014 3300005564 Unclassified 1028
58 Ga0068854_100179195 3300005578 Bacteria 1654
59 Ga0068859_100000079 3300005617 Bacteria 90756
60 Ga0068859_100007560 3300005617 Bacteria 11037
61 Ga0068859_100017493 3300005617 Bacteria 7206
62 Ga0068859_100187443 3300005617 Unclassified 2153
63 Ga0068859_100628922 3300005617 Unclassified 1166
64 Ga0068863_100016159 3300005841 Bacteria 7160
65 Ga0068858_100213994 3300005842 Bacteria 1824
66 Ga0068860_100089620 3300005843 Bacteria 2928
67 Ga0068860_100170596 3300005843 Bacteria 2101
68 Ga0068862_100226110 3300005844 Unclassified 1696
69 Ga0068862_100542421 3300005844 Bacteria 1109
70 Ga0075436_100000052 3300006914 Bacteria 70308
71 Ga0075436_100000374 3300006914 Bacteria 28484
72 Ga0075436_100002187 3300006914 Bacteria 13480
73 Ga0097620_100000079 3300006931 Bacteria 90756
74 Ga0097620_100007561 3300006931 Bacteria 11037
75 Ga0097620_100017493 3300006931 Bacteria 7206
76 Ga0097620_100187441 3300006931 Unclassified 2153
77 Ga0097620_100628881 3300006931 Unclassified 1166
78 Ga0105247_10014681 3300009101 Bacteria 4695
79 Ga0105243_10000017 3300009148 Bacteria 228340
80 Ga0105243_10210775 3300009148 Bacteria 1711
81 Ga0105242_10000006 3300009176 Bacteria 200375
82 Ga0105248_10011961 3300009177 Bacteria 9569
83 Ga0105248_10076172 3300009177 Bacteria 3771
84 Ga0105248_10079414 3300009177 Bacteria 3688
85 Ga0105248_10176871 3300009177 Bacteria 2405
86 Ga0105248_10212902 3300009177 Bacteria 2177
87 Ga0105249_10000503 3300009553 Bacteria 36164
88 Ga0163162_10211192 3300013306 Unclassified 2071
89 Ga0163162_10281900 3300013306 Bacteria 1794
90 Ga0163162_10303409 3300013306 Bacteria 1729
91 Ga0157375_10712972 3300013308 Bacteria 1156
92 Ga0163163_10232722 3300014325 Bacteria 1892
93 Ga0157380_10009170 3300014326 Bacteria 7080
94 Ga0157377_10059424 3300014745 Unclassified 2179
95 Ga0207697_10059378 3300025315 Bacteria 1590
96 Ga0207653_10000072 3300025885 Bacteria 74068
97 Ga0207647_10062964 3300025904 Bacteria 2258
98 Ga0207643_10012133 3300025908 Bacteria 4657
99 Ga0207684_10000175 3300025910 Bacteria 106336
100 Ga0207684_10005859 3300025910 Bacteria 11253
101 Ga0207684_10007818 3300025910 Bacteria 9567
102 Ga0207684_10187569 3300025910 Bacteria 1783
103 Ga0207707_10000003 3300025912 Bacteria 642592
104 Ga0207707_10000017 3300025912 Bacteria 237068
105 Ga0207660_10003648 3300025917 Bacteria 10035
106 Ga0207660_10020759 3300025917 Bacteria 4414
107 Ga0207652_10000120 3300025921 Bacteria 86585
108 Ga0207652_10000297 3300025921 Bacteria 51413
109 Ga0207646_10000081 3300025922 Bacteria 128933
110 Ga0207646_10000541 3300025922 Bacteria 49906
111 Ga0207681_10010359 3300025923 Bacteria 5706
112 Ga0207644_10000520 3300025931 Bacteria 24934
113 Ga0207686_10000024 3300025934 Bacteria 171857
114 Ga0207709_10000012 3300025935 Bacteria 552803
115 Ga0207670_10000476 3300025936 Bacteria 22168
116 Ga0207670_10000714 3300025936 Bacteria 17545
117 Ga0207665_10018730 3300025939 Unclassified 4550
118 Ga0207711_10005705 3300025941 Bacteria 10506
119 Ga0207711_10049325 3300025941 Bacteria 3605
120 Ga0207711_10107603 3300025941 Bacteria 2476
121 Ga0207689_10006017 3300025942 Bacteria 10731
122 Ga0207651_10112656 3300025960 Bacteria 2045
123 Ga0207651_10360576 3300025960 Unclassified 1227
124 Ga0207712_10000695 3300025961 Bacteria 25951
125 Ga0207708_10096069 3300026075 Unclassified 2289
126 Ga0207708_10138053 3300026075 Bacteria 1910
127 Ga0207641_10002675 3300026088 Bacteria 16277
128 Ga0207641_10567940 3300026088 Bacteria 1108
129 Ga0207648_10163310 3300026089 Bacteria 1968
130 Ga0207675_100529306 3300026118 Unclassified 1176
131 Ga0268265_10662712 3300028380 Unclassified 1004
132 Ga0373934_0035696 3300035086 Unclassified 1957
133 Ga0373940_0042780 3300035088 Bacteria 1250
134 Ga0373927_0203100 3300035695 Unclassified 1301
135 Ga0373937_0031961 3300036401 Bacteria 4772
136 Ga0436364_1144222 3300037853 Unclassified 1012
137 Ga0496114_0251500 3300048917 Bacteria 1555
138 Ga0496117_0032639 3300048920 Bacteria 3952
139 Ga0496118_0224122 3300048921 Bacteria 1091
140 nmdc:mga05p37_564239_c1 3300050507 Bacteria 1293
141 nmdc:mga0n895_162024_c1 3300050512 Bacteria 2268
142 nmdc:mga0rr50_249_c1 3300050513 Bacteria 29256
143 nmdc:mga08x19_106_c1 3300050514 Bacteria 74458
144 nmdc:mga08x19_59_c1 3300050514 Bacteria 118026
145 nmdc:mga0a205_407314_c1 3300050515 Unclassified 1223
146 nmdc:mga0a205_729116_c1 3300050515 Bacteria 840

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013306 Ga0163162_10303409 Ga0163162_103034092 246
2 3300013308 Ga0157375_10712972 Ga0157375_107129721 252
3 3300025917 Ga0207660_10003648 Ga0207660_100036483 252
4 3300026075 Ga0207708_10138053 Ga0207708_101380532 252
5 3300050515 nmdc:mga0a205_407314_c1 nmdc:mga0a205_407314_c1_400_1161 253
6 3300050515 nmdc:mga0a205_729116_c1 nmdc:mga0a205_729116_c1_58_819 253
7 3300035695 Ga0373927_0203100 Ga0373927_0203100_205_987 257
8 3300005468 Ga0070707_100141684 Ga0070707_1001416843 258
9 3300005842 Ga0068858_100213994 Ga0068858_1002139941 258
10 3300006914 Ga0075436_100002187 Ga0075436_10000218714 258
11 3300009553 Ga0105249_10000503 Ga0105249_1000050317 258
12 3300013306 Ga0163162_10281900 Ga0163162_102819002 258
13 3300025910 Ga0207684_10187569 Ga0207684_101875692 258
14 3300025961 Ga0207712_10000695 Ga0207712_100006959 258
15 3300005468 Ga0070707_100001242 Ga0070707_10000124212 260
16 3300013306 Ga0163162_10211192 Ga0163162_102111922 260
17 3300025922 Ga0207646_10000541 Ga0207646_1000054116 260
18 3300005445 Ga0070708_100239278 Ga0070708_1002392782 262
19 3300037853 Ga0436364_1144222 Ga0436364_1144222_129_920 262
20 3300005444 Ga0070694_100008030 Ga0070694_1000080307 264
21 3300005444 Ga0070694_100008361 Ga0070694_1000083612 264
22 3300005444 Ga0070694_100020908 Ga0070694_1000209083 264
23 3300050507 nmdc:mga05p37_564239_c1 nmdc:mga05p37_564239_c1_372_1169 264
24 3300005549 Ga0070704_100294618 Ga0070704_1002946181 266
25 3300048920 Ga0496117_0032639 Ga0496117_0032639_275_1084 266
26 3300048921 Ga0496118_0224122 Ga0496118_0224122_229_1038 266
27 3300005518 Ga0070699_100000503 Ga0070699_1000005038 268
28 3300025904 Ga0207647_10062964 Ga0207647_100629642 269
29 3300006914 Ga0075436_100000374 Ga0075436_1000003748 270
30 3300050514 nmdc:mga08x19_59_c1 nmdc:mga08x19_59_c1_92607_93446 270
31 3300050513 nmdc:mga0rr50_249_c1 nmdc:mga0rr50_249_c1_15146_15964 271
32 3300050514 nmdc:mga08x19_106_c1 nmdc:mga08x19_106_c1_53770_54588 271
33 3300005844 Ga0068862_100226110 Ga0068862_1002261103 272
34 3300028380 Ga0268265_10662712 Ga0268265_106627121 272
35 3300009148 Ga0105243_10210775 Ga0105243_102107751 273
36 3300026089 Ga0207648_10163310 Ga0207648_101633103 273
37 3300005518 Ga0070699_100000970 Ga0070699_1000009704 274
38 3300005536 Ga0070697_100014859 Ga0070697_1000148594 274
39 3300005546 Ga0070696_100008295 Ga0070696_1000082953 274
40 3300005549 Ga0070704_100178215 Ga0070704_1001782151 274
41 3300005444 Ga0070694_100488874 Ga0070694_1004888741 275
42 3300035086 Ga0373934_0035696 Ga0373934_0035696_970_1818 275
43 3300036401 Ga0373937_0031961 Ga0373937_0031961_1706_2554 275
44 3300005445 Ga0070708_100002607 Ga0070708_1000026079 276
45 3300005518 Ga0070699_100043075 Ga0070699_1000430752 276
46 3300005468 Ga0070707_100214257 Ga0070707_1002142572 277
47 3300005518 Ga0070699_100127904 Ga0070699_1001279041 277
48 3300009177 Ga0105248_10176871 Ga0105248_101768712 277
49 3300025941 Ga0207711_10107603 Ga0207711_101076032 277
50 3300025942 Ga0207689_10006017 Ga0207689_100060175 277
51 3300025960 Ga0207651_10360576 Ga0207651_103605761 277
52 3300005445 Ga0070708_100002801 Ga0070708_1000028019 278
53 3300014326 Ga0157380_10009170 Ga0157380_100091702 278
54 3300048917 Ga0496114_0251500 Ga0496114_0251500_378_1325 278
55 3300003316 rootH1_10184363 rootH1_101843631 279
56 3300003322 rootL2_10280101 rootL2_102801012 279
57 3300005293 Ga0065715_10037628 Ga0065715_100376282 279
58 3300005293 Ga0065715_10205510 Ga0065715_102055102 279
59 3300005295 Ga0065707_10273043 Ga0065707_102730431 279
60 3300005337 Ga0070682_100011295 Ga0070682_1000112952 279
61 3300005340 Ga0070689_100003683 Ga0070689_1000036837 279
62 3300005343 Ga0070687_100145309 Ga0070687_1001453091 279
63 3300005353 Ga0070669_100020143 Ga0070669_1000201433 279
64 3300005444 Ga0070694_100287509 Ga0070694_1002875092 279
65 3300005458 Ga0070681_10005474 Ga0070681_100054744 279
66 3300005467 Ga0070706_100006804 Ga0070706_1000068043 279
67 3300005578 Ga0068854_100179195 Ga0068854_1001791952 279
68 3300005617 Ga0068859_100000079 Ga0068859_10000007967 279
69 3300005617 Ga0068859_100007560 Ga0068859_1000075602 279
70 3300005844 Ga0068862_100542421 Ga0068862_1005424212 279
71 3300006914 Ga0075436_100000052 Ga0075436_10000005259 279
72 3300006931 Ga0097620_100000079 Ga0097620_10000007967 279
73 3300006931 Ga0097620_100007561 Ga0097620_1000075612 279
74 3300009148 Ga0105243_10000017 Ga0105243_10000017139 279
75 3300009176 Ga0105242_10000006 Ga0105242_10000006140 279
76 3300009177 Ga0105248_10079414 Ga0105248_100794143 279
77 3300009177 Ga0105248_10212902 Ga0105248_102129021 279
78 3300014325 Ga0163163_10232722 Ga0163163_102327223 279
79 3300025315 Ga0207697_10059378 Ga0207697_100593782 279
80 3300025910 Ga0207684_10005859 Ga0207684_100058598 279
81 3300025923 Ga0207681_10010359 Ga0207681_100103592 279
82 3300025934 Ga0207686_10000024 Ga0207686_1000002466 279
83 3300025935 Ga0207709_10000012 Ga0207709_10000012418 279
84 3300025936 Ga0207670_10000714 Ga0207670_1000071415 279
85 3300025941 Ga0207711_10049325 Ga0207711_100493252 279
86 3300026088 Ga0207641_10567940 Ga0207641_105679401 279
87 3300026118 Ga0207675_100529306 Ga0207675_1005293061 279
88 3300035088 Ga0373940_0042780 Ga0373940_0042780_272_1111 279
89 3300050512 nmdc:mga0n895_162024_c1 nmdc:mga0n895_162024_c1_1351_2190 279
90 3300005293 Ga0065715_10089637 Ga0065715_100896372 280
91 3300005336 Ga0070680_100017265 Ga0070680_1000172651 280
92 3300005337 Ga0070682_100000295 Ga0070682_10000029529 280
93 3300005340 Ga0070689_100000379 Ga0070689_1000003791 280
94 3300005355 Ga0070671_100000252 Ga0070671_10000025210 280
95 3300005364 Ga0070673_100065658 Ga0070673_1000656581 280
96 3300005406 Ga0070703_10000033 Ga0070703_100000334 280
97 3300005445 Ga0070708_100162625 Ga0070708_1001626252 280
98 3300005458 Ga0070681_10000035 Ga0070681_1000003519 280
99 3300005467 Ga0070706_100001134 Ga0070706_1000011347 280
100 3300005467 Ga0070706_100001410 Ga0070706_10000141023 280
101 3300005468 Ga0070707_100000333 Ga0070707_10000033313 280
102 3300005471 Ga0070698_100001830 Ga0070698_10000183020 280
103 3300005471 Ga0070698_100032817 Ga0070698_1000328171 280
104 3300005530 Ga0070679_100000703 Ga0070679_1000007032 280
105 3300005536 Ga0070697_100000165 Ga0070697_10000016536 280
106 3300005536 Ga0070697_100025916 Ga0070697_1000259161 280
107 3300005536 Ga0070697_100253368 Ga0070697_1002533681 280
108 3300005549 Ga0070704_100001129 Ga0070704_1000011295 280
109 3300005549 Ga0070704_100015047 Ga0070704_1000150471 280
110 3300005564 Ga0070664_100592014 Ga0070664_1005920142 280
111 3300005617 Ga0068859_100017493 Ga0068859_1000174932 280
112 3300005617 Ga0068859_100187443 Ga0068859_1001874431 280
113 3300005617 Ga0068859_100628922 Ga0068859_1006289221 280
114 3300005841 Ga0068863_100016159 Ga0068863_1000161596 280
115 3300005843 Ga0068860_100089620 Ga0068860_1000896202 280
116 3300005843 Ga0068860_100170596 Ga0068860_1001705962 280
117 3300006931 Ga0097620_100017493 Ga0097620_1000174932 280
118 3300006931 Ga0097620_100187441 Ga0097620_1001874411 280
119 3300006931 Ga0097620_100628881 Ga0097620_1006288811 280
120 3300009177 Ga0105248_10011961 Ga0105248_100119614 280
121 3300009177 Ga0105248_10076172 Ga0105248_100761721 280
122 3300014745 Ga0157377_10059424 Ga0157377_100594242 280
123 3300025885 Ga0207653_10000072 Ga0207653_1000007247 280
124 3300025908 Ga0207643_10012133 Ga0207643_100121335 280
125 3300025910 Ga0207684_10000175 Ga0207684_1000017556 280
126 3300025910 Ga0207684_10007818 Ga0207684_100078188 280
127 3300025912 Ga0207707_10000017 Ga0207707_10000017131 280
128 3300025921 Ga0207652_10000120 Ga0207652_1000012059 280
129 3300025922 Ga0207646_10000081 Ga0207646_1000008164 280
130 3300025931 Ga0207644_10000520 Ga0207644_100005209 280
131 3300025936 Ga0207670_10000476 Ga0207670_100004762 280
132 3300025941 Ga0207711_10005705 Ga0207711_100057055 280
133 3300025960 Ga0207651_10112656 Ga0207651_101126563 280
134 3300026075 Ga0207708_10096069 Ga0207708_100960691 280
135 3300026088 Ga0207641_10002675 Ga0207641_1000267514 280
136 3300025939 Ga0207665_10018730 Ga0207665_100187303 282
137 3300005336 Ga0070680_100001673 Ga0070680_1000016734 287
138 3300005458 Ga0070681_10000042 Ga0070681_1000004269 287
139 3300005530 Ga0070679_100000072 Ga0070679_10000007230 287
140 3300025912 Ga0207707_10000003 Ga0207707_10000003221 287
141 3300025917 Ga0207660_10020759 Ga0207660_100207596 287
142 3300025921 Ga0207652_10000297 Ga0207652_1000029721 287
143 3300005334 Ga0068869_100003075 Ga0068869_10000307510 301
144 3300005547 Ga0070693_100276187 Ga0070693_1002761871 305
145 3300009101 Ga0105247_10014681 Ga0105247_100146813 305
146 3300000532 CNAas_1001397 CNAas_10013972 306

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08401

ArdcN

N-terminal domain of anti-restriction factor ArdC

15

117

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
4j4m-assembly1.cif.gz_A crystal structure of tm-1, a trimeresurus mucrosquamatus venom metalloproteinase 0.5578 165 214
6c4l-assembly1.cif.gz_C-2 yersinopine dehydrogenase (ypodh) - apo 0.5551 227 294
4v53-assembly1.cif.gz_AT crystal structure of the bacterial ribosome from escherichia coli in complex with gentamicin. 0.499 231 295
4v6s-assembly1.cif.gz_BV structural characterization of mrna-trna translocation intermediates (class 3 of the six classes) 0.4858 231 295
3k7n-assembly1.cif.gz_A structures of two elapid snake venom metalloproteases with distinct activities highlight the disulfide patterns in the d domain of adamalysin family proteins 0.4845 165 230
ID Description Score Start End Superfamily
af_Q7ZYZ9_193_399_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.6453 172 214 3.40.390.10
af_O88839_200_414_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.6048 172 214 3.40.390.10
af_Q965Q2_143_249_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.5736 203 291 1.25.40.10
af_P27896_39_146_1.20.120.960 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Histidine kinase NarX, sensor domain 0.5637 231 294 1.20.120.960
af_Q90459_155_262_1.10.472.10 Mainly Alpha;Orthogonal Bundle;Cyclin A; domain 1;Cyclin-like 0.5295 197 293 1.10.472.10
ID Description Score Start End GO Terms
AF-A0A2V8SD94-F1-model_v4 IrrE N-terminal-like domain-containing protein 0.8793 207 300
AF-A0A1Q7IF88-F1-model_v4 IrrE N-terminal-like domain-containing protein 0.8686 164 301
AF-A0A2V8Q2V5-F1-model_v4 DUF1738 domain-containing protein 0.854 195 301
AF-T1AYL8-F1-model_v4 LtrC protein 0.8283 142 297
AF-T1CSW4-F1-model_v4 Protein containing DUF955 0.8207 172 303

Feature Viewer

pLDDT pTM Quality
60.03 0.54 Medium
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Predicted Structure (AlphaFold2)

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