F186211

General Info

Members Datasets Scaffolds Average Seq Length
142 90 142 691

Family's Representative Sequence

Representative Sequence 3300031730|Ga0307516_10062546|Ga0307516_100625462
Length 768
Sequence MDQARSFHLGSLPSPRGSRVSPGMTILFCVASMPDLLLELFSEEIPARMQAGAARDLERLMVGALTDRGYLFEGIKAFAGPRRLTLAIAGLPAKQSDVREELKGPKTDAPQAALDGFLKKTGLTKDQLKIEKTPKGDVYMAVVERKGRETPLVLAEIIPEVMAKLPWPKSMRWKPGSAVRWVRPLHSILCTFDGELVPFSFAGVSSGLHTRGHRFLSEGKIEAKRFDDYAQKLKAAHVVLEAEERSAIIFEGVKQAAFVHGLEMIPDEGLLAEVSGLAEWPVVYVGTIQDEFMDVPAEILQTSMRTHQKYFSLRDPKTGKMANRFALVANMIAKDGGKEIVAGNERVLRARLSDAKFFWDEDRKHTLESRVEKLKGIVFHAKLGTQYERVQRIEKLAGEIAGKIGADVEKSKRAARLAKADLTTGVVGEFPELQGVMGRYYALHDKEDAAVADAVRDHYKPAGPSDAVPTEKVSIAVALADKLDSLVWFFAASLKPTGSSDPFALRRAALGTIRILLENGVHLQLARLIWQVLSQMRVSHGTTFESGKSTIQLKAHLLTHELHDMRRLFDGAVADDQIGTAMEEYRALWINDVAKDVLEFFADRLKVALKEKGVRHDLIDAVFSLSHEGDLVRLVARVQALQAFLKSDDGATLLAGYKRAVNILKIEEKKDGKTFISEVSEKLLSEPAEKDLFAALTKARTAITAALEKENFAAAMQQMASLRVPVDAFFEGVKVNADDKQVRENRLNLLASLRATLHQVADFSKIEG

Samples

Sample ID Description Type Environment
1 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
15 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
18 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
19 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
20 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
21 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
31 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
32 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
33 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
51 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
52 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
53 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
54 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
55 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
56 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
57 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
58 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
59 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
60 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
61 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
66 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
77 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
78 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
84 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
85 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
86 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
87 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
88 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
89 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
90 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.04
Nodule 0
Rhizoplane 0
Rhizosphere 87.32
Stem 0
Stem Tuber 0
Unclassified 5.63

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25165J46597_1000304 3300003214 Bacteria 61301
2 JGI25153J46596_10000607 3300003215 Bacteria 21930
3 rootH2_10002821 3300003320 Bacteria 3509
4 Ga0070666_10001421 3300005335 Bacteria 14506
5 Ga0070680_100006704 3300005336 Bacteria 8769
6 Ga0070680_100098104 3300005336 Bacteria 2430
7 Ga0070681_10000010 3300005458 Bacteria 140126
8 Ga0070681_10071820 3300005458 Bacteria 3426
9 Ga0070679_100000279 3300005530 Bacteria 43122
10 Ga0070679_100037452 3300005530 Bacteria 4819
11 Ga0068853_100001493 3300005539 Bacteria 16998
12 Ga0070665_100000656 3300005548 Bacteria 46656
13 Ga0070665_100017420 3300005548 Bacteria 7212
14 Ga0068855_100000075 3300005563 Bacteria 119094
15 Ga0068855_100103390 3300005563 Bacteria 3277
16 Ga0068852_100025914 3300005616 Bacteria 4759
17 Ga0068852_100040443 3300005616 Bacteria 3933
18 Ga0068860_100063562 3300005843 Bacteria 3505
19 Ga0097621_100000351 3300006237 Bacteria 31761
20 Ga0097621_100038260 3300006237 Bacteria 3849
21 Ga0068871_100000292 3300006358 Bacteria 34915
22 Ga0068871_100016966 3300006358 Bacteria 5498
23 Ga0068865_100010002 3300006881 Bacteria 5897
24 Ga0105240_10000641 3300009093 Bacteria 64500
25 Ga0105240_10006282 3300009093 Bacteria 17480
26 Ga0105240_10051827 3300009093 Bacteria 5162
27 Ga0105240_10167925 3300009093 Bacteria 2601
28 Ga0105245_10032624 3300009098 Bacteria 4610
29 Ga0105241_10041462 3300009174 Bacteria 3478
30 Ga0105242_10056847 3300009176 Bacteria 3202
31 Ga0105242_10074736 3300009176 Bacteria 2820
32 Ga0105242_10112887 3300009176 Bacteria 2320
33 Ga0105248_10000001 3300009177 Bacteria 1881304
34 Ga0105238_10006158 3300009551 Bacteria 11907
35 Ga0105238_10065582 3300009551 Bacteria 3632
36 Ga0105239_10043500 3300010375 Bacteria 4923
37 Ga0105239_10078400 3300010375 Bacteria 3635
38 Ga0157370_10058693 3300013104 Bacteria 3657
39 Ga0157369_10081474 3300013105 Bacteria 3464
40 Ga0163162_10030393 3300013306 Bacteria 5353
41 Ga0157372_10006520 3300013307 Bacteria 12425
42 Ga0163163_10000006 3300014325 Bacteria 320401
43 Ga0157379_10008986 3300014968 Bacteria 8711
44 Ga0157376_10059036 3300014969 Bacteria 3216
45 Ga0213876_10000324 3300021384 Bacteria 41776
46 Ga0209233_1000013 3300025261 Bacteria 1013785
47 Ga0209758_1000013 3300025297 Bacteria 873003
48 Ga0207680_10006327 3300025903 Bacteria 5717
49 Ga0207705_10007488 3300025909 Bacteria 8024
50 Ga0207705_10031869 3300025909 Bacteria 3766
51 Ga0207654_10020764 3300025911 Bacteria 3487
52 Ga0207707_10000005 3300025912 Bacteria 382024
53 Ga0207695_10000018 3300025913 Bacteria 766611
54 Ga0207695_10002278 3300025913 Bacteria 28735
55 Ga0207695_10015398 3300025913 Bacteria 9003
56 Ga0207695_10029604 3300025913 Bacteria 6044
57 Ga0207695_10064531 3300025913 Bacteria 3770
58 Ga0207695_10066920 3300025913 Bacteria 3687
59 Ga0207660_10013941 3300025917 Bacteria 5275
60 Ga0207660_10028696 3300025917 Bacteria 3808
61 Ga0207652_10000068 3300025921 Bacteria 110287
62 Ga0207652_10005797 3300025921 Bacteria 10022
63 Ga0207652_10015286 3300025921 Bacteria 6231
64 Ga0207694_10000018 3300025924 Bacteria 331281
65 Ga0207686_10054977 3300025934 Bacteria 2495
66 Ga0207704_10003821 3300025938 Bacteria 6852
67 Ga0207711_10000002 3300025941 Bacteria 1228676
68 Ga0207667_10000052 3300025949 Bacteria 232415
69 Ga0207667_10008366 3300025949 Bacteria 12297
70 Ga0207667_10019852 3300025949 Bacteria 7489
71 Ga0207677_10017838 3300026023 Bacteria 4245
72 Ga0207639_10001596 3300026041 Bacteria 15237
73 Ga0207698_10037459 3300026142 Bacteria 3572
74 Ga0268266_10001101 3300028379 Bacteria 33869
75 Ga0268266_10029795 3300028379 Bacteria 4637
76 Ga0268266_10030879 3300028379 Bacteria 4550
77 Ga0268266_10148615 3300028379 Bacteria 2109
78 Ga0268264_10076174 3300028381 Bacteria 2853
79 Ga0265337_1001808 3300028556 Bacteria 10275
80 Ga0265334_10001871 3300028573 Bacteria 9993
81 Ga0265318_10000080 3300028577 Bacteria 86276
82 Ga0265318_10001346 3300028577 Bacteria 14651
83 Ga0265338_10041563 3300028800 Bacteria 4298
84 Ga0265325_10000251 3300031241 Bacteria 38232
85 Ga0265340_10000046 3300031247 Bacteria 56234
86 Ga0265340_10009722 3300031247 Bacteria 5156
87 Ga0265339_10005101 3300031249 Bacteria 8819
88 Ga0265331_10024837 3300031250 Bacteria 3028
89 Ga0265316_10021875 3300031344 Bacteria 5406
90 Ga0265316_10075802 3300031344 Bacteria 2586
91 Ga0265313_10000486 3300031595 Bacteria 41794
92 Ga0265313_10001975 3300031595 Bacteria 18534
93 Ga0265314_10009644 3300031711 Bacteria 8131
94 Ga0265314_10014612 3300031711 Bacteria 6268
95 Ga0307516_10062546 3300031730 Bacteria 3607
96 Ga0373937_0018490 3300036401 Bacteria 6225
97 Ga0373937_0044472 3300036401 Bacteria 4056
98 Ga0316582_0056584 3300036647 Unclassified 2503
99 Ga0436365_0672883 3300039437 Bacteria 113020
100 Ga0436365_0707204 3300039437 Bacteria 13735
101 Ga0496121_0002159 3300048924 Bacteria 30777
102 Ga0496126_0067829 3300048929 Bacteria 3186
103 Ga0496126_0069298 3300048929 Bacteria 3147
104 Ga0501031_0034102 3300049568 Bacteria 3322
105 Ga0501032_0011417 3300049569 Bacteria 6382
106 Ga0501033_0026588 3300049570 Bacteria 4354
107 Ga0501033_0028592 3300049570 Bacteria 4188
108 Ga0501033_0037637 3300049570 Bacteria 3621
109 Ga0501034_0027864 3300049571 Bacteria 5745
110 Ga0501034_0031911 3300049571 Bacteria 5352
111 Ga0501038_0081942 3300049574 Bacteria 2718
112 Ga0501042_0001754 3300049578 Bacteria 12966
113 Ga0501046_0004005 3300049580 Bacteria 13451
114 Ga0501047_0001239 3300049581 Bacteria 25275
115 Ga0501047_0011521 3300049581 Bacteria 8371
116 Ga0501047_0027610 3300049581 Bacteria 5468
117 Ga0501047_0033955 3300049581 Bacteria 4925
118 Ga0501048_0004863 3300049582 Bacteria 10244
119 Ga0501067_0000480 3300049583 Bacteria 21781
120 Ga0501070_0000033 3300049586 Bacteria 128626
121 Ga0501074_0003538 3300049590 Bacteria 11081
122 Ga0501074_0006200 3300049590 Bacteria 8630
123 Ga0501080_0002903 3300049742 Bacteria 15079
124 Ga0501083_0001092 3300049744 Bacteria 18154
125 Ga0501035_0006831 3300049822 Bacteria 10664
126 Ga0501035_0008402 3300049822 Bacteria 9613
127 Ga0501035_0050473 3300049822 Bacteria 3728
128 Ga0501044_0002832 3300049823 Bacteria 19738
129 Ga0501044_0003224 3300049823 Bacteria 18378
130 Ga0501044_0004713 3300049823 Bacteria 15246
131 Ga0501044_0009769 3300049823 Bacteria 10434
132 Ga0501044_0066657 3300049823 Bacteria 3670
133 Ga0501044_0071627 3300049823 Bacteria 3524
134 Ga0500643_000003 3300053087 Bacteria 876659
135 Ga0500646_0013213 3300053090 Bacteria 2137
136 Ga0500595_016184 3300053119 Bacteria 2783
137 Ga0500568_0021624 3300053139 Bacteria 2764
138 Ga0500573_0000012 3300053140 Bacteria 208486
139 Ga0500619_008774 3300053154 Bacteria 2475
140 Ga0501084_0000016 3300054114 Bacteria 155919
141 Ga0501084_0000329 3300054114 Bacteria 36197
142 Ga0501082_0000918 3300060353 Bacteria 25948

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300036401 Ga0373937_0018490 Ga0373937_0018490_14_1930 638
2 3300006881 Ga0068865_100010002 Ga0068865_1000100025 641
3 3300009176 Ga0105242_10112887 Ga0105242_101128871 641
4 3300014969 Ga0157376_10059036 Ga0157376_100590362 641
5 3300025938 Ga0207704_10003821 Ga0207704_100038213 641
6 3300031241 Ga0265325_10000251 Ga0265325_1000025134 646
7 3300031249 Ga0265339_10005101 Ga0265339_100051014 646
8 3300005336 Ga0070680_100098104 Ga0070680_1000981042 653
9 3300005530 Ga0070679_100037452 Ga0070679_1000374522 653
10 3300025909 Ga0207705_10031869 Ga0207705_100318692 653
11 3300025917 Ga0207660_10028696 Ga0207660_100286963 653
12 3300025921 Ga0207652_10005797 Ga0207652_100057975 653
13 3300031250 Ga0265331_10024837 Ga0265331_100248372 653
14 3300053090 Ga0500646_0013213 Ga0500646_0013213_48_2060 653
15 3300053139 Ga0500568_0021624 Ga0500568_0021624_455_2467 653
16 3300005563 Ga0068855_100103390 Ga0068855_1001033902 654
17 3300005843 Ga0068860_100063562 Ga0068860_1000635622 654
18 3300006237 Ga0097621_100038260 Ga0097621_1000382602 654
19 3300009093 Ga0105240_10051827 Ga0105240_100518272 654
20 3300009174 Ga0105241_10041462 Ga0105241_100414622 654
21 3300010375 Ga0105239_10078400 Ga0105239_100784002 654
22 3300013105 Ga0157369_10081474 Ga0157369_100814742 654
23 3300025911 Ga0207654_10020764 Ga0207654_100207642 654
24 3300025913 Ga0207695_10015398 Ga0207695_100153986 654
25 3300025949 Ga0207667_10008366 Ga0207667_1000836610 654
26 3300028381 Ga0268264_10076174 Ga0268264_100761742 654
27 3300009098 Ga0105245_10032624 Ga0105245_100326242 655
28 3300053119 Ga0500595_016184 Ga0500595_016184_487_2499 655
29 3300005548 Ga0070665_100000656 Ga0070665_10000065637 656
30 3300028379 Ga0268266_10001101 Ga0268266_1000110134 656
31 3300048929 Ga0496126_0069298 Ga0496126_0069298_487_2499 657
32 3300006358 Ga0068871_100016966 Ga0068871_1000169662 661
33 3300005458 Ga0070681_10071820 Ga0070681_100718202 662
34 3300049581 Ga0501047_0011521 Ga0501047_0011521_6248_8236 662
35 3300009551 Ga0105238_10065582 Ga0105238_100655823 665
36 3300025913 Ga0207695_10066920 Ga0207695_100669202 665
37 3300049581 Ga0501047_0027610 Ga0501047_0027610_3019_5028 669
38 3300049822 Ga0501035_0008402 Ga0501035_0008402_56_2065 669
39 3300049823 Ga0501044_0002832 Ga0501044_0002832_5687_7696 669
40 3300003215 JGI25153J46596_10000607 JGI25153J46596_100006079 670
41 3300006237 Ga0097621_100000351 Ga0097621_1000003512 670
42 3300006358 Ga0068871_100000292 Ga0068871_10000029235 670
43 3300009093 Ga0105240_10006282 Ga0105240_1000628213 670
44 3300009093 Ga0105240_10167925 Ga0105240_101679252 670
45 3300009176 Ga0105242_10056847 Ga0105242_100568472 670
46 3300009176 Ga0105242_10074736 Ga0105242_100747362 670
47 3300025297 Ga0209758_1000013 Ga0209758_1000013786 670
48 3300025913 Ga0207695_10002278 Ga0207695_100022786 670
49 3300025913 Ga0207695_10029604 Ga0207695_100296046 670
50 3300025934 Ga0207686_10054977 Ga0207686_100549772 670
51 3300025949 Ga0207667_10019852 Ga0207667_100198522 670
52 3300026023 Ga0207677_10017838 Ga0207677_100178382 670
53 3300028379 Ga0268266_10029795 Ga0268266_100297953 670
54 3300028379 Ga0268266_10148615 Ga0268266_101486151 670
55 3300048924 Ga0496121_0002159 Ga0496121_0002159_1831_3843 670
56 3300049569 Ga0501032_0011417 Ga0501032_0011417_676_2688 670
57 3300049570 Ga0501033_0026588 Ga0501033_0026588_443_2455 670
58 3300049570 Ga0501033_0028592 Ga0501033_0028592_713_2752 670
59 3300049570 Ga0501033_0037637 Ga0501033_0037637_657_2672 670
60 3300049574 Ga0501038_0081942 Ga0501038_0081942_40_2052 670
61 3300049578 Ga0501042_0001754 Ga0501042_0001754_3212_5224 670
62 3300049580 Ga0501046_0004005 Ga0501046_0004005_1104_3116 670
63 3300049581 Ga0501047_0001239 Ga0501047_0001239_10271_12283 670
64 3300049581 Ga0501047_0033955 Ga0501047_0033955_2450_4462 670
65 3300049582 Ga0501048_0004863 Ga0501048_0004863_4731_6743 670
66 3300049583 Ga0501067_0000480 Ga0501067_0000480_5574_7586 670
67 3300049590 Ga0501074_0003538 Ga0501074_0003538_7176_9188 670
68 3300049744 Ga0501083_0001092 Ga0501083_0001092_8663_10675 670
69 3300049822 Ga0501035_0050473 Ga0501035_0050473_1626_3638 670
70 3300049823 Ga0501044_0066657 Ga0501044_0066657_1094_3106 670
71 3300049823 Ga0501044_0071627 Ga0501044_0071627_535_2547 670
72 3300053087 Ga0500643_000003 Ga0500643_000003_113875_115887 670
73 3300053140 Ga0500573_0000012 Ga0500573_0000012_196788_198800 670
74 3300054114 Ga0501084_0000329 Ga0501084_0000329_9613_11625 670
75 3300060353 Ga0501082_0000918 Ga0501082_0000918_15913_17925 670
76 3300009551 Ga0105238_10006158 Ga0105238_1000615812 672
77 3300025909 Ga0207705_10007488 Ga0207705_100074882 672
78 3300025921 Ga0207652_10015286 Ga0207652_100152863 672
79 3300025924 Ga0207694_10000018 Ga0207694_10000018219 672
80 3300003320 rootH2_10002821 rootH2_100028214 674
81 3300049571 Ga0501034_0027864 Ga0501034_0027864_3421_5457 675
82 3300014968 Ga0157379_10008986 Ga0157379_100089865 676
83 3300036647 Ga0316582_0056584 Ga0316582_0056584_202_2274 679
84 3300014325 Ga0163163_10000006 Ga0163163_1000000677 684
85 3300010375 Ga0105239_10043500 Ga0105239_100435005 686
86 3300048929 Ga0496126_0067829 Ga0496126_0067829_572_2704 686
87 3300028577 Ga0265318_10001346 Ga0265318_1000134612 689
88 3300031595 Ga0265313_10000486 Ga0265313_1000048621 689
89 3300031711 Ga0265314_10009644 Ga0265314_100096448 689
90 3300036401 Ga0373937_0044472 Ga0373937_0044472_342_2411 689
91 3300039437 Ga0436365_0707204 Ga0436365_0707204_1684_3756 690
92 3300054114 Ga0501084_0000016 Ga0501084_0000016_87213_89384 691
93 3300028800 Ga0265338_10041563 Ga0265338_100415632 694
94 3300031344 Ga0265316_10075802 Ga0265316_100758021 694
95 3300031711 Ga0265314_10014612 Ga0265314_100146122 694
96 3300005616 Ga0068852_100025914 Ga0068852_1000259145 696
97 3300005616 Ga0068852_100040443 Ga0068852_1000404434 699
98 3300026142 Ga0207698_10037459 Ga0207698_100374592 699
99 3300049590 Ga0501074_0006200 Ga0501074_0006200_3800_6001 699
100 3300049823 Ga0501044_0003224 Ga0501044_0003224_5014_7215 699
101 3300013306 Ga0163162_10030393 Ga0163162_100303935 701
102 3300013307 Ga0157372_10006520 Ga0157372_100065205 701
103 3300053154 Ga0500619_008774 Ga0500619_008774_140_2383 701
104 3300021384 Ga0213876_10000324 Ga0213876_1000032423 703
105 3300039437 Ga0436365_0672883 Ga0436365_0672883_59120_61285 703
106 3300049571 Ga0501034_0031911 Ga0501034_0031911_3027_5327 703
107 3300009093 Ga0105240_10000641 Ga0105240_1000064160 704
108 3300025913 Ga0207695_10000018 Ga0207695_10000018319 704
109 3300028556 Ga0265337_1001808 Ga0265337_10018083 705
110 3300028573 Ga0265334_10001871 Ga0265334_100018715 705
111 3300009177 Ga0105248_10000001 Ga0105248_1000000158 707
112 3300013104 Ga0157370_10058693 Ga0157370_100586932 707
113 3300025941 Ga0207711_10000002 Ga0207711_10000002759 707
114 3300005539 Ga0068853_100001493 Ga0068853_10000149313 708
115 3300026041 Ga0207639_10001596 Ga0207639_1000159612 708
116 3300028577 Ga0265318_10000080 Ga0265318_1000008013 708
117 3300031247 Ga0265340_10000046 Ga0265340_1000004659 709
118 3300031344 Ga0265316_10021875 Ga0265316_100218753 709
119 3300049568 Ga0501031_0034102 Ga0501031_0034102_655_2868 709
120 3300049586 Ga0501070_0000033 Ga0501070_0000033_72276_74489 709
121 3300049742 Ga0501080_0002903 Ga0501080_0002903_979_3192 709
122 3300049823 Ga0501044_0004713 Ga0501044_0004713_9090_11303 709
123 3300031730 Ga0307516_10062546 Ga0307516_100625462 710
124 3300005335 Ga0070666_10001421 Ga0070666_100014213 711
125 3300005563 Ga0068855_100000075 Ga0068855_10000007514 711
126 3300025903 Ga0207680_10006327 Ga0207680_100063275 711
127 3300025913 Ga0207695_10064531 Ga0207695_100645312 711
128 3300025949 Ga0207667_10000052 Ga0207667_10000052134 711
129 3300028379 Ga0268266_10030879 Ga0268266_100308792 711
130 3300049822 Ga0501035_0006831 Ga0501035_0006831_5689_7893 711
131 3300049823 Ga0501044_0009769 Ga0501044_0009769_911_3121 711
132 3300005336 Ga0070680_100006704 Ga0070680_1000067049 713
133 3300005458 Ga0070681_10000010 Ga0070681_10000010104 713
134 3300005530 Ga0070679_100000279 Ga0070679_10000027916 713
135 3300025912 Ga0207707_10000005 Ga0207707_10000005104 713
136 3300025917 Ga0207660_10013941 Ga0207660_100139414 713
137 3300025921 Ga0207652_10000068 Ga0207652_1000006883 713
138 3300005548 Ga0070665_100017420 Ga0070665_1000174207 715
139 3300031247 Ga0265340_10009722 Ga0265340_100097223 715
140 3300031595 Ga0265313_10001975 Ga0265313_1000197515 719
141 3300003214 JGI25165J46597_1000304 JGI25165J46597_100030422 725
142 3300025261 Ga0209233_1000013 Ga0209233_1000013856 725

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02092

tRNA_synt_2f

Glycyl-tRNA synthetase beta subunit

36

624

0.96

PF05746

DALR_1

DALR anticodon binding domain

653

767

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7xjy-assembly1.cif.gz_A cryo-em structure of oryza sativa plastid glycyl-trna synthetase (apo form) 0.8788 4 531
7xof-assembly1.cif.gz_B crystal structure of oryza sativa plastid glycyl-trna synthetase 0.8559 4 717
7eiv-assembly1.cif.gz_C heterotetrameric glycyl-trna synthetase from escherichia coli 0.846 4 595
7eiv-assembly1.cif.gz_C heterotetrameric glycyl-trna synthetase from escherichia coli 0.8358 4 595
7xof-assembly1.cif.gz_A crystal structure of oryza sativa plastid glycyl-trna synthetase 0.8293 4 721
ID Description Score Start End Superfamily
af_P00961_579_685_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9141 607 715 1.10.730.10
af_P00961_579_685_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.8902 607 715 1.10.730.10
af_A0A0R0KHF7_383_497_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.8269 601 717 1.10.730.10
af_A0A368UIE1_963_1099_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.8178 586 717 1.10.730.10
af_Q8L785_931_1067_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.815 586 717 1.10.730.10
ID Description Score Start End GO Terms
AF-W1X862-F1-model_v4 Glycine--tRNA ligase beta subunit (EC 6.1.1.14) (Glycyl-tRNA synthetase beta subunit) 0.9859 335 467 GO:0004820
GO:0005524
GO:0005829
GO:0006426
AF-A0A435GKL7-F1-model_v4 glycine--tRNA ligase (EC 6.1.1.14) 0.9855 350 494 GO:0004820
GO:0005524
GO:0005829
GO:0006426
AF-A0A258EWE1-F1-model_v4 Glycine--tRNA ligase beta subunit (EC 6.1.1.14) (Glycyl-tRNA synthetase beta subunit) 0.9771 563 721 GO:0004814
GO:0004820
GO:0005524
GO:0005829
GO:0006420
GO:0006426
AF-A0A352KGB8-F1-model_v4 Glycine--tRNA ligase beta subunit (EC 6.1.1.14) (Glycyl-tRNA synthetase beta subunit) 0.9706 545 721 GO:0004814
GO:0004820
GO:0005524
GO:0005829
GO:0006420
GO:0006426
AF-A0A3D1XTD2-F1-model_v4 glycine--tRNA ligase (EC 6.1.1.14) 0.9702 400 501 GO:0004820
GO:0005524
GO:0005829
GO:0006426

Feature Viewer

pLDDT pTM Quality
87.19 0.74 High
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Predicted Structure (AlphaFold2)

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